Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1009119

https://doi.org/10.1371/journal.pcbi.1009119

De novo mutational signature discovery in tumor genomes using SparseSignatures

Cited by: 21
Author(s): Avantika Lal, Keli Liu, Robert Tibshirani, Arend Sidow, Daniele Ramazzotti
Published: over 3 years ago

Software Mentions 6

bioconductor: signeR
Empirical Bayesian approach to mutational signature discovery
Papers that mentioned: 9
bioconductor: SparseSignatures
SparseSignatures
Papers that mentioned: 3
cran: deconstructSigs
Identifies Signatures Present in a Tumor Sample
Papers that mentioned: 85
cran: NMF
Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
Papers that mentioned: 108
cran: nnlasso
Non-Negative Lasso and Elastic Net Penalized Generalized Linear Models
Papers that mentioned: 2
cran: nnls
The Lawson-Hanson Algorithm for Non-Negative Least Squares (NNLS)
Papers that mentioned: 8