Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: scds

https://packages.ecosyste.ms/registries/bioconductor.org/packages/scds

In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data
1 version
Latest release: 12 months ago
2 dependent packages
20,862 downloads total

Papers Mentioning scds 7

pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools
Cited by: 53
Author(s): Pierre-Luc Germain, Anthony Sonrel, Mark D. Robinson
Software Mentions: 21
Published: about 4 years ago

10.3390/biomedicines9040368

Single-Cell RNA Sequencing in Parkinson’s Disease
Cited by: 13
Author(s): Shi-Xun Ma, Su Bin Lim
Software Mentions: 9
Published: over 3 years ago

10.21203/rs.3.rs-438662/v1

Systems biological assessment of human immunity to BNT162b2 mRNA vaccination
Cited by: 2
Author(s): Bali Pulendran, Prabhu S. Arunachalam
Software Mentions: 7
Published: over 3 years ago

10.1093/bioinformatics/btz698

scds: computational annotation of doublets in single-cell RNA sequencing data
Cited by: 114
Author(s): Abha Bais, Dennis Kostka
Software Mentions: 7
Published: about 5 years ago

10.1038/s42003-021-02320-w

A yeast-optimized single-cell transcriptomics platform elucidates how mycophenolic acid and guanine alter global mRNA levels
Cited by: 13
Author(s): Guste Urbonaite, Jimmy Tsz Hang Lee, Ping Liu, Guillermo E. Parada, Martin Hemberg, Murat Açar
Software Mentions: 5
Published: over 3 years ago

10.1016/j.crmeth.2021.100008

Double-jeopardy: scRNA-seq doublet/multiplet detection using multi-omic profiling
Cited by: 3
Author(s): Bo Sun, Emmanuel Bugarín-Estrada, Lauren Overend, Catherine Elizabeth Walker, Felicia Anna Tucci, Rachael Bashford-Rogers
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-020-1950-6

Decontamination of ambient RNA in single-cell RNA-seq with DecontX
Cited by: 172
Author(s): Shiyi Yang, Sean Corbett, Yusuke Koga, Zhe Wang, W. Evan Johnson, Masanao Yajima, Joshua D. Campbell
Software Mentions: 1
Published: over 4 years ago