Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: metagene
https://packages.ecosyste.ms/registries/bioconductor.org/packages/metagene
A package to produce metagene plots
1 version
Latest release: about 1 year ago
17,059 downloads total
Papers Mentioning metagene 9
10.1371/journal.pcbi.1004751
metagene Profiles Analyses Reveal Regulatory Element’s Factor-Specific Recruitment PatternsCited by: 11
Author(s): Charles Joly Beauparlant, Fabien C. Lamaze, Astrid Deschênes, Rawane Samb, Audrey Lemaçon, Pascal Belleau, Steve Bilodeau, Arnaud Droit
Software Mentions: 5
Published: about 8 years ago
10.1186/s12864-017-3589-6
Mechanisms of Groucho-mediated repression revealed by genome-wide analysis of Groucho binding and activityCited by: 14
Author(s): Michael Chambers, Wiam Turki-Judeh, Min Woo Kim, Kenny Chen, Sean D. Gallaher, Albert J. Courey
Software Mentions: 5
Published: over 7 years ago
10.1186/s12864-016-3288-8
The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic dataCited by: 24
Author(s): Giovanna Ambrosini, René Dreos, Sunil Kumar, Philipp Bücher
Software Mentions: 5
Published: almost 8 years ago
10.1186/s12859-019-3100-2
RACS: rapid analysis of ChIP-Seq data for contig based genomesCited by: 4
Author(s): Marcelo Ponce, Alejandro Saettone, Syed Nabeel‐Shah, Jeffrey Fillingham
Software Mentions: 5
Published: about 5 years ago
10.1128/mSystems.00323-18
Gut Microbiota Has a Widespread and Modifiable Effect on Host Gene RegulationCited by: 62
Author(s): Allison L. Richards, Amanda L. Muehlbauer, Adnan Alazizi, Michael B. Burns, Anthony Findley, Francesco Messina, Trevor Gould, Camilla Cascardo, Roger Piqué-Regi, Ran Blekhman, Francesca Luca
Software Mentions: 5
Published: about 5 years ago
10.3390/ijms21197086
Transcriptome-Wide Analysis of Interplay between mRNA Stability, Translation and Small RNAs in Response to Neuronal Membrane DepolarizationCited by: 3
Author(s): Dylan Kiltschewskij, Murray J. Cairns
Software Mentions: 3
Published: about 4 years ago
10.1186/s13059-018-1478-1
DNA Topoisomerase I differentially modulates R-loops across the human genomeCited by: 103
Author(s): Stefano Giustino Manzo, Stella R. Hartono, Lionel A. Sanz, Jessica Marinello, Sara De Biasi, Andrea Cossarizza, Giovanni Capranico, Frédéric Chédin
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pcbi.1000029
Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational BiologyCited by: 350
Author(s): Karthik Devarajan
Software Mentions: 1
Published: over 16 years ago
10.1128/MRA.01072-18
Draft Genome Sequence of Lactobacillus fermentum Lf2, an Exopolysaccharide-Producing Strain Isolated from Argentine CheeseCited by: 2
Author(s): Hugh M. B. Harris, Elisa Carmen Ale, Jorge Alberto Reinheimer, Ana Griselda Binetti, Paul W. O’Toole
Software Mentions: 1
Published: about 6 years ago