bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-12166-0

A Whole Blood Molecular Signature for Acute Myocardial Infarction
Cited by: 47
Author(s): Evan D. Muse, Eric R. Kramer, Haiying Wang, Paddy Barrett, Fereshteh Parviz, M. A. Novotny, Roger S. Lasken, Tim Jatkoe, Glenn Oliveira, Hongfan Peng, Jerry Lu, Mark C. Connelly, K Schilling, Chandra Rao, Ali Torkamani, Eric J. Topol
Software Mentions: 4
Published: almost 9 years ago

10.7150/ijms.49053

Comprehensive analysis of TPX2-related ceRNA network as prognostic biomarkers in lung adenocarcinoma
Cited by: 6
Author(s): Huo Chen, Meng-Yu Zhang, Rui Li, Xi-Jia Zhou, Liu T, Jianping Li, Xiao Liu, Yi-Qing Qu
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.104119

Vascular endothelial growth factor receptor-2 and its association with tumor immune regulatory gene expression in hepatocellular carcinoma
Cited by: 5
Author(s): Ze-Long Liu, Lingling Zhu, Jinghua Liu, Zhaoxia Pu, Zhiping Ruan, Chen Jiang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2020.581789

Integrated Analysis of Key Genes and Pathways Involved in Fetal Growth Restriction and Their Associations With the Dysregulation of the Maternal Immune System
Cited by: 2
Author(s): Xue Wang, Hong Zhu, Lei Lei, Yang Zhang, Chao Tang, Jingyi Wu, Jing Zhou, Xirong Xiao
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-70368-5

Transcriptomic analysis delineates potential signature genes and miRNAs associated with the pathogenesis of asthma
Cited by: 16
Author(s): Prithvi Singh, Archana Sharma, Jha R, Shweta Arora, Rafiq Ahmad, Arshad Husain Rahmani, Saleh A. Almatroodi, Ravins Dohare, Mansoor Ali Syed
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2020.00989

Identification of the Prognostic Value of Immune-Related Genes in Esophageal Cancer
Cited by: 16
Author(s): Xiong Guo, Yujun Wang, Han Zhang, Chuan Qin, Anqi Cheng, Jianjun Li, Xinglong Dai, Ziwei Wang
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-70540-x

Identification of C3 as a therapeutic target for diabetic nephropathy by bioinformatics analysis
Cited by: 16
Author(s): Shumei Tang, Xiufen Wang, Tianci Deng, Huipeng Ge, Xiangcheng Xiao
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-74798-z

Epigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients
Cited by: 19
Author(s): Nathalie Acevedo, Rui Benfeitas, Shintaro Katayama, Sören Bruhn, Ann‐Catrin Andersson, Gustav Wikberg, Lena Lundeberg, Jessica M. Lindvall, Dario Greco, Juha Kere, Cilla Söderhäll, Annika Scheynius
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-75060-2

Differential immune gene expression associated with contemporary range expansion in two invasive rodents in Senegal
Cited by: 1
Author(s): Nathalie Charbonnel, Maxime Galan, Caroline Tatard, Anne Loiseau, Christophe Diagne, Ambroise Dalecky, Hugues Parrinello, Stéphanie Rialle, Dany Séverac, Carine Brouat
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-75326-9

Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress
Cited by: 33
Author(s): Meltem Weger, Daniel Alpern, Antoine Cherix, Sriparna Ghosal, Jocelyn Grosse, Julie Russeil, Rolf Gruetter, E. R. de Kloet, Bart Deplancke, Carmen Sandi
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-76048-8

Characterization of somatic mutation-associated microenvironment signatures in acute myeloid leukemia patients based on TCGA analysis
Cited by: 4
Author(s): Jun Wang, Feng‐Ting Dao, Lu Yang, Ya‐Zhen Qin
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-76657-3

Distinct regional ontogeny and activation of tumor associated macrophages in human glioblastoma
Cited by: 64
Author(s): Alexander Landry, Michael Balas, Saira Alli, Julian Spears, Zsolt Zádor
Software Mentions: 4
Published: almost 6 years ago

10.3390/ani11092705

Ruminal and Fecal Bacteriome of Dairy Calves Fed Different Levels and Sources of NDF
Cited by: 2
Author(s): Gercino Ferreira Virgínio Júnior, Ana Paula da Silva, Ariany Faria de Toledo, Milaine Poczynek, Amanda Moelemberg Cezar, Horácio Montenegro, Luiz Lehmann Coutinho, Carla Maris Machado Bittar
Software Mentions: 4
Published: about 5 years ago

10.3390/ani11082165

Comprehensive Transcriptomic Comparison between Porcine CD8− and CD8+ Gamma Delta T Cells Revealed Distinct Immune Phenotype
Cited by: 7
Author(s): Sang–Wook Kim, Bee-Oh Lim, Sameer-ul-Salam Mattoo, Eunyoung Oh, Chang-Gi Jeong, Won-Il Kim, Kyung-Tai Lee, Sang-Myeong Lee, Junmo Kim
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/6420425

Protein Kinase A Is Involved in Neuropathic Pain by Activating the p38MAPK Pathway to Mediate Spinal Cord Cell Apoptosis
Cited by: 9
Author(s): Yajun Deng, Liang Yang, Qiqi Xie, Fengbiao Yang, Guoqiang Li, Guang-Zhi Zhang, Shaoping Li, Zhi-Xi Wu, Jing Wang, Xuewen Kang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-79781-2

Novel circRNA discovery in sheep shows evidence of high backsplice junction conservation
Cited by: 7
Author(s): Endika Varela-Martínez, Giulia I. Corsi, Christian Anthon, Jan Gorodkin, Begoña M. Jugo
Software Mentions: 4
Published: over 5 years ago

10.1186/s40659-018-0188-1

Identification of key genes and miRNAs markers of papillary thyroid cancer
Cited by: 31
Author(s): Jie Qiu, Wenwei Zhang, Chuanshan Zang, Xiaomin Liu, Fuxue Liu, Ruifeng Ge, Yan Sun, Qingsheng Xia
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13045-014-0089-x

Splicing factor 3b subunit 1 (Sf3b1) haploinsufficient mice display features of low risk Myelodysplastic syndromes with ring sideroblasts
Cited by: 20
Author(s): Valeria Visconte, Ali Tabarroki, Li Zhang, Yvonne Parker, Edy Hasrouni, R. Mahfouz, Kyoichi Isono, Haruhiko Koseki, Mikkael A. Sekeres, Yogen Saunthararajah, John Barnard, Daniel J. Lindner, Heesun J. Rogers, Ramon V. Tiu
Software Mentions: 4
Published: almost 12 years ago

10.3389/fgene.2021.694777

Identification of Signature Genes Associated With Invasiveness and the Construction of a Prognostic Model That Predicts the Overall Survival of Bladder Cancer
Cited by: 10
Author(s): Yang He, Yu Wu, Zhe Liu, Boping Li, Ning Jiang, Peng Xu, Aiming Xu
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-79704-1

Data-driven detection of subtype-specific differentially expressed genes
Cited by: 9
Author(s): Lulu Chen, Yingzhou Lu, Chiung Ting Wu, Robert Clarke, Guoqiang Yu, Jennifer E. Van Eyk, David M. Herrington, Yue Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2019.01119

Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis
Cited by: 46
Author(s): Jie Li, Cun Liu, Yi Chen, Chundi Gao, Miyuan Wang, Xiaoran Ma, Wenfeng Zhang, Jing Zhuang, Yan Yao
Software Mentions: 4
Published: almost 7 years ago

10.1155/2021/5345181

Prognostic Implications of Immune-Related Gene Pairs Signatures in Bladder Cancer
Cited by: 3
Author(s): Hui Xiong, Hui Gao, Jinding Hu, Ying Dai, Hanbo Wang, Min Fu, Taiguo Qi, Lianjun Li, Qinghua Xia, Xunbo Jin, Zilian Cui, Weiting Kang
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9010149

Hallmarks of Basidiomycete Soft- and White-Rot in Wood-Decay -Omics Data of Two Armillaria Species
Cited by: 21
Author(s): Niranjan P. Sahu, Zsolt Merényi, Balázs Bálint, Brigitta Kiss, György Sipos, Rebecca A. Owens, László G. Nagy
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.629475

Luminal A Breast Cancer Co-expression Network: Structural and Functional Alterations
Cited by: 11
Author(s): Diana García-Cortés, Enrique Hernández‐Lemus, Jesús Espinal-Enríquez
Software Mentions: 4
Published: over 5 years ago

10.1016/j.celrep.2020.107857

GM-CSF Calibrates Macrophage Defense and Wound Healing Programs during Intestinal Infection and Inflammation
Cited by: 65
Author(s): Tomas Castro‐Dopico, Aaron Fleming, Thomas W. Dennison, John R. Ferdinand, Katherine Harcourt, Benjamin J Stewart, M Zaeem Cader, Zewen Kelvin Tuong, Chenzhi Jing, Laurence S.C. Lok, Rebeccah J. Mathews, Anaïs Portet, Arthur Kaser, Simon Clare, Menna R. Clatworthy
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/9967954

Construction and Validation of a Macrophage-Associated Risk Model for Predicting the Prognosis of Osteosarcoma
Cited by: 5
Author(s): Kang-Wen Xiao, Zhibo Liu, Zhao-Yi Zeng, F. Yan, Lingfei Xiao, Jiali Li, Lin Cai
Software Mentions: 4
Published: over 5 years ago

10.1155/2019/1785042

Low GAS5 Levels as a Predictor of Poor Survival in Patients with Lower-Grade Gliomas
Cited by: 18
Author(s): Yanfang Wang, Xin Shan, Kai Zhang, Run Shi, Xuanwen Bao
Software Mentions: 4
Published: over 7 years ago

10.1155/2019/1571045

A Circulating miRNA-Based Scoring System Established by WGCNA to Predict Colon Cancer
Cited by: 2
Author(s): Dashan Qin, Rui Wei, Si Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-80158-8

Gene expression in blood reflects smoking exposure among cancer-free women in the Norwegian Women and Cancer (NOWAC) postgenome cohort
Cited by: 6
Author(s): Nikita Baiju, Torkjel M. Sandanger, Pål Sætrom, Therese Haugdahl Nøst
Software Mentions: 4
Published: over 5 years ago

10.1080/15384101.2016.1261765

Genome-wide screen of cell-cycle regulators in normal and tumor cells identifies a differential response to nucleosome depletion
Cited by: 24
Author(s): Maria Sokolova, Mikko Turunen, Oliver Mortusewicz, Teemu Kivioja, Patrick Herr, Anna Vähärautio, Mikael Björklund, Minna Taipale, Thomas Helleday, Jussi Taipale
Software Mentions: 4
Published: over 9 years ago

10.3390/metabo8030041

Unbiased Lipidomic Profiling of Triple-Negative Breast Cancer Tissues Reveals the Association of Sphingomyelin Levels with Patient Disease-Free Survival
Cited by: 27
Author(s): Preeti Purwaha, Franklin Gu, Danthasinghe Waduge Badrajee Piyarathna, Theckelnaycke Rajendiran, Anindita Ravindran, Angela R. Omilian, Sao Jiralerspong, Gokul M. Das, Carl Morrison, Christine B. Ambrosone, Cristian Coarfa, Nagireddy Putluri, Arun Sreekumar
Software Mentions: 4
Published: about 8 years ago

10.3390/microorganisms9020459

A Mucoralean White Collar-1 Photoreceptor Controls Virulence by Regulating an Intricate Gene Network during Host Interactions
Cited by: 6
Author(s): Carlos Pérez-Arques, María Isabel Navarro-Mendoza, Laura Murcia, Carlos Lax, Marta Silva, Javier Capilla, Eusebio Navarro, Victoriano Garre
Software Mentions: 4
Published: over 5 years ago

10.1002/advs.202003504

Cytosolic Delivery of Thiolated Neoantigen Nano‐Vaccine Combined with Immune Checkpoint Blockade to Boost Anti‐Cancer T Cell Immunity
Cited by: 28
Author(s): Da Zhang, Zongming Lin, Ming Wu, Zhixiong Cai, Youshi Zheng, Lei He, Zhenli Li, Jie Zhou, Liqin Sun, Geng Chen, Yongyi Zeng, Juan Li, Jingfeng Liu, Huanghao Yang, Xiaolong Liu
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00478

Bioinformatics Analysis of Prognostic miRNA Signature and Potential Critical Genes in Colon Cancer
Cited by: 25
Author(s): Weigang Chen, Chang Gao, Yong Liu, Ying Wen, Xiaoling Hong, Zunnan Huang
Software Mentions: 4
Published: over 6 years ago

10.1186/s40364-021-00302-y

Lower BCL11B expression is associated with adverse clinical outcome for patients with myelodysplastic syndrome
Cited by: 7
Author(s): Xin Huang, Cunte Chen, Mengjun Zhong, Suxia Geng, Yujie Zhao, Minming Li, Chenxin Deng, Lizhi Zeng, Ping Wu, Zhihui Lu, Jianyu Weng, Xin Du, Yangqiu Li
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/9587084

Development of an Individualized Immune Prognostic Signature for Clear Cell Renal Cell Carcinoma through the Identification of Differential Immune Genes
Cited by: 1
Author(s): Jianfeng Wang, Chaozhi Tang, Xiaowu Liu
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8060842

Transcriptome Profiling of Toxoplasma gondii-Infected Human Cerebromicrovascular Endothelial Cell Response to Treatment with Monensin
Cited by: 5
Author(s): Mohammad Syamsul Reza Harun, Mica Taylor, Xing‐Quan Zhu, Hany M. Elsheikha
Software Mentions: 4
Published: over 6 years ago

10.1155/2020/3641231

Immune-Related Four-lncRNA Signature for Patients with Cervical Cancer
Cited by: 19
Author(s): Jianfeng Zheng, Benben Cao, Xia Zhang, Zhenbin Niu, Jinyi Tong
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13195-018-0394-7

Alzheimer’s disease master regulators analysis: search for potential molecular targets and drug repositioning candidates
Cited by: 62
Author(s): Daiani Machado de Vargas, Marco Antônio De Bastiani, Eduardo R. Zimmer, Fábio Klamt
Software Mentions: 4
Published: about 8 years ago

10.18632/oncotarget.15842

Identifying biomarkers of papillary renal cell carcinoma associated with pathological stage by weighted gene co-expression network analysis
Cited by: 29
Author(s): Zhong He, Min Sun, Ke Yuan, Rongjie Lin, Youde Xiao, Shaosheng Zhou, Hong Zhao, Yan Wang, Fuxiang Zhou, Youwen Zhou
Software Mentions: 4
Published: over 9 years ago

10.3389/fgene.2021.647521

Exploration of Prognostic Biomarkers for Lung Adenocarcinoma Through Bioinformatics Analysis
Cited by: 9
Author(s): Zhengliang Tu, Xue He, Liping Zeng, Di Meng, Runzhou Zhuang, Jiangang Zhao, Wanrong Dai
Software Mentions: 4
Published: over 5 years ago

10.1186/s13223-021-00584-9

Expression profiling of ileal mucosa in asthma reveals upregulation of innate immunity and genes characteristic of Paneth and goblet cells
Cited by: 1
Author(s): Jan Krzysztof Nowak, Marzena Dworacka, Nazgul Gubaj, Arystan Dossimov, Zhumabek Dossimov, Jarosław Walkowiak
Software Mentions: 4
Published: about 5 years ago

10.1155/2019/2725192

In Silico Integration Approach Reveals Key MicroRNAs and Their Target Genes in Follicular Thyroid Carcinoma
Cited by: 10
Author(s): Shengqing Hu, Yunfei Liao, Juan Zheng, Luoning Gou, Anita Regmi, Mohammad Ishraq Zafar, Lulu Chen
Software Mentions: 4
Published: over 7 years ago

10.1038/s41419-020-03020-9

Intracellular amyloid toxicity induces oxytosis/ferroptosis regulated cell death
Cited by: 51
Author(s): Ling Huang, Daniel B. McClatchy, Pamela Maher, Zhibin Liang, Jolene K. Diedrich, David Soriano-Castell, Joshua Goldberg, Maxim N. Shokhirev, John R. Yates, David Schubert, António Currais
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2021.699385

Analysis of Immune–Stromal Score-Based Gene Signature and Molecular Subtypes in Osteosarcoma: Implications for Prognosis and Tumor Immune Microenvironment
Cited by: 3
Author(s): Dingzhao Zheng, Kai-Chun Yang, Xinjiang Chen, Yongwu Li, Yongchun Chen
Software Mentions: 4
Published: almost 5 years ago

10.1155/2019/5437531

Long Noncoding RNA ASB16-AS1 Promotes Proliferation, Migration, and Invasion in Glioma Cells
Cited by: 26
Author(s): Delong Zhang, Huanggui Zhou, Jun Liu, Jie Mao
Software Mentions: 4
Published: over 7 years ago

10.1097/MD.0000000000023153

Identification of candidate biomarkers correlated with the pathogenesis and prognosis of breast cancer via integrated bioinformatics analysis
Cited by: 8
Author(s): Shuyu Liu, Xinkui Liu, Jiarui Wu, Wei Zhou, Mengwei Ni, Ziqi Meng, Shanshan Jia, Jingyuan Zhang, Siyu Guo, Shan Lu, Yingfei Li
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-82853-6

Transcriptome comparisons of in vitro intestinal epithelia grown under static and microfluidic gut-on-chip conditions with in vivo human epithelia
Cited by: 19
Author(s): Kornphimol Kulthong, Guido Hooiveld, Loes P. M. Duivenvoorde, Ignacio Miro Estruch, Victor Augustus Marin, Meike van der Zande, Hans Bouwmeester
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82976-w

Integrated analysis identifies oxidative stress genes associated with progression and prognosis in gastric cancer
Cited by: 29
Author(s): Zhengyuan Wu, Lin Wang, Zhenpei Wen, Jun Yao
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.690509

Identification and Validation of a Ferroptosis-Related Long Non-coding RNA Signature for Predicting the Outcome of Lung Adenocarcinoma
Cited by: 27
Author(s): Zhiyuan Zheng, Qian Zhang, Wei Wu, Yu Xue, Shuhan Liu, Qiaoqian Chen, Lin Dong
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-84647-2

Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)
Cited by: 8
Author(s): Timothy I. Shaw, Li Dong, Liqing Tian, Chenxi Qian, Yu Liu, Bensheng Ju, Anthony A. High, Kanisha Kavdia, Vishwajeeth Pagala, Bridget Shaner, Deqing Pei, John Easton, Laura J. Janke, Shaina N. Porter, Xiaotu Ma, Cheng Cheng, Shondra M. Pruett-Miller, John K. Choi, Jiyang Yu, Junmin Peng, Wei Gu, A. Thomas Look, James R. Downing, Jinghui Zhang
Software Mentions: 4
Published: over 5 years ago

10.1186/s40425-018-0464-1

A novel anti-HER2 anthracycline-based antibody-drug conjugate induces adaptive anti-tumor immunity and potentiates PD-1 blockade in breast cancer
Cited by: 63
Author(s): Lucia D’Amico, Ulrike Menzel, Michael Prummer, Philipp Müller, Mélanie Buchi, Abhishek S. Kashyap, Ulrike Haessler, Alexander Yermanos, Rémy Gébleux, Manfred Briendl, Tamara Hell, Fabian I. Wolter, Roger R. Beerli, Iva Truxová, Radek Špíšek, Tatjana Vlajnic, Ulf Grawunder, Sai T. Reddy, Alfred Zippelius
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2020.614888

Integrated Analysis of Immunity- and Ferroptosis-Related Biomarker Signatures to Improve the Prognosis Prediction of Hepatocellular Carcinoma
Cited by: 41
Author(s): Xuanlong Du, Zhang Ye-wei
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-018-0408-5

Integrated multi-omic analysis of host-microbiota interactions in acute oak decline
Cited by: 44
Author(s): Martin Broberg, James Doonan, Filip Mundt, Sandra Denman, James E. McDonald
Software Mentions: 4
Published: over 8 years ago

10.1038/s41420-018-0133-7

A two-microRNA-based signature predicts first-line chemotherapy outcomes in advanced colorectal cancer patients
Cited by: 14
Author(s): Jia Liu, Zhi Zuo, Wei Wang, Qi Zhao, Miao Zhen Qiu, Hui Luo, Zhan Hong Chen, Hai Yu Mo, Feng Wang, Dong Yang, Yun Wang, Wei Xiao, Qi Wu, Huai-Qiang Ju, Zhao Lei Zeng
Software Mentions: 4
Published: almost 8 years ago

10.1155/2013/167915

Correction of Spatial Bias in Oligonucleotide Array Data
Cited by: 2
Author(s): Philippe Serhal, Sébastien Lemieux
Software Mentions: 4
Published: over 13 years ago

10.1111/acel.13366

Clonal hematopoiesis associated with epigenetic aging and clinical outcomes
Cited by: 57
Author(s): Daniel Nachun, Ake T. Lu, Alexander Bick, Pradeep Natarajan, Joshua Weinstock, Mindy D Szeto, Sekar Kathiresan, Gonçalo Abecasis, Kent D. Taylor, Xiuqing Guo, Russ Tracy, Peter Durda, Yongmei Liu, Craig W. Johnson, Stephen S. Rich, David Van Den Berg, Cecilia A. Laurie, Tom Blackwell, George Papanicolaou, Adolfo Correa, Laura M. Raffield, Andrew D. Johnson, Joanne M. Murabito, JoAnn E. Manson, Pinkal Desai, Charles Kooperberg, Themistocles L. Assimes, Daniel Levy, Jerome I. Rotter, Alex P. Reiner, Eric A. Whitsel, James G. Wilson, Steve Horvath, Siddhartha Jaiswal
Software Mentions: 4
Published: over 5 years ago

10.1155/2017/6896390

Gene Expression Profiling of the Optic Nerve Head of Patients with Primary Open-Angle Glaucoma
Cited by: 4
Author(s): Xinrong Wang, KeWei Gong, Haiyan Li, Cong Yi Wang, Chaoyi Qu, Hui Li
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-86536-0

Modular genome-wide gene expression architecture shared by early traits of osteoporosis and atherosclerosis in the Young Finns Study
Cited by: 6
Author(s): Binisha H. Mishra, Pashupati P. Mishra, Emma Raitoharju, Saara Marttila, Nina Mononen, Harri Sievänen, Jorma Viikari, Markus Juonala, Marika Laaksonen, Nina Hutri‐Kähönen, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki
Software Mentions: 4
Published: over 5 years ago

10.1111/acel.13195

Growth differentiation factor 15 protects against the aging‐mediated systemic inflammatory response in humans and mice
Cited by: 59
Author(s): Ji Sun Moon, Ludger Goeminne, Jung Tae Kim, Jing Tian, Seok Hwan Kim, Ha Thi Nga, Sun Hyung Kang, Baeki E. Kang, Jin Seok Byun, Young‐Sun Lee, Jae‐Han Jeon, Minho Shong, Johan Auwerx, Dongryeol Ryu, Hyon‐Seung Yi
Software Mentions: 4
Published: about 6 years ago

10.1038/celldisc.2017.13

Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation
Cited by: 7
Author(s): Miriam Landfors, Jostein Johansen, Jan Magnus Aronsen, Cathrine Broberg Vågbø, Louis C. Doré, Chuan He, Ivar Sjaastad, Pål Sætrom, Péter Fedorcsák, John Arne Dahl, Håvard Aanes, Markus Fußer, Arne Klungland
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-87540-0

Identification of novel autophagy-related lncRNAs associated with a poor prognosis of colon adenocarcinoma through bioinformatics analysis
Cited by: 43
Author(s): Danni Wu, Zhenhua Yin, Yisheng Ji, Lin Li, Yunxin Li, F. Meng, Xiaohan Ren, Ming Xu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41419-018-1141-5

Plau and Tgfbr3 are YAP-regulated genes that promote keratinocyte proliferation
Cited by: 18
Author(s): Susan M. Corley, Veronica Mendoza-Reinoso, Nichole Giles, Emma Suwanun Singer, John E.A. Common, Marc R. Wilkins, Annemiek Beverdam
Software Mentions: 4
Published: almost 8 years ago

10.18632/aging.203352

Development and validation of prognostic model based on the analysis of autophagy-related genes in colon cancer
Cited by: 8
Author(s): Yongfeng Wang, Kaili Lin, Tianchun Xu, Liuli Wang, Liangyin Fu, Guangming Zhang, Jing Ai, Yajun Jiao, Rongrong Zhu, Xiaoyong Han, Hui Cai
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.00269

Does Prenatal Stress Shape Postnatal Resilience? – An Epigenome-Wide Study on Violence and Mental Health in Humans
Cited by: 50
Author(s): Fernanda Serpeloni, Karl M. Radtke, Tobias Hecker, Johanna Sill, Vanja Vukojević, Simone Gonçalves de Assis, Maggie Schauer, Thomas Elbert, Daniel Nätt
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-87759-x

SIRT1 promotes lipid metabolism and mitochondrial biogenesis in adipocytes and coordinates adipogenesis by targeting key enzymatic pathways
Cited by: 58
Author(s): Yasser Majeed, Najeeb Halabi, Aisha Madani, Rudolf Engelke, Aditya Bhagwat, Houari Abdesselem, Maha Victor Agha, Muneera Vakayil, Raphael Jean Courjaret, Neha Goswami, Hisham Ben Hamidane, Mohamed A. Elrayess, Arash Rafii, Johannes Graumann, Frank Schmidt, Nayef Mazloum
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/4980609

The Important Role of Perituberal Tissue in Epileptic Patients with Tuberous Sclerosis Complex by the Transcriptome Analysis
Cited by: 3
Author(s): Shuqiang Li, Huijie Shao, Liansheng Chang
Software Mentions: 4
Published: almost 6 years ago

10.1155/2021/6672899

Comparative Transcriptome Analysis Reveals Relationship among mRNAs, lncRNAs, and circRNAs of Slow Transit Constipation
Cited by: 2
Author(s): Shuai Yan, Yinzi Yue, Mingming Sun, Yinghui Chen, Xiaopeng Wang, Haihua Qian
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-87805-8

Integrin αvβ5 heterodimer is a specific marker of human pancreatic beta cells
Cited by: 4
Author(s): Jacqueline V. Schiesser, Thomas Loudovaris, Helen E. Thomas, Andrew G. Elefanty
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/6697810

Shared Genetic and Epigenetic Mechanisms between the Osteogenic Differentiation of Dental Pulp Stem Cells and Bone Marrow Stem Cells
Cited by: 14
Author(s): Sebastian Gaus, Hanluo Li, Simin Li, Qian Wang, Tina Kottek, Sebastian Hahnel, Xiangqiong Liu, Yupei Deng, Dirk Ziebolz, Rainer Haak, Gerhard Schmalz, Lei Liu, Vuk Savković, Bernd Lethaus
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-87720-y

Macrophages with reduced expressions of classical M1 and M2 surface markers in human bronchoalveolar lavage fluid exhibit pro-inflammatory gene signatures
Cited by: 19
Author(s): Hiroto Takiguchi, Chen Yang, Yang Cheng, Başak Şahin, Beth A. Whalen, Stephen Milne, Kentaro Akata, Kei Yamasaki, Julia Yang, Chung Yan Cheung, Ryan Vander Werff, Kelly M. McNagny, Fernando Sergio Leitão Filho, Tawimas Shaipanich, Stephan F. van Eeden, Ma’en Obeidat, Janice M. Leung, Don D. Sin
Software Mentions: 4
Published: over 5 years ago

10.1007/s00401-021-02327-x

Targeting fibroblast growth factor receptors to combat aggressive ependymoma
Cited by: 9
Author(s): Daniela Lötsch, Dominik Kirchhofer, Bernhard Englinger, Li Jiang, Konstantin Okonechnikov, Daniel Senfter, Anna Laemmerer, Lisa Gabler, Christine Pirker, Andrew M. Donson, Peter Bannauer, Pia Korbel, Carola Jaunecker, Jens-Martin Hübner, Lisa Mayr, Sibylle Madlener, Maria Theresa Schmook, Gerda Ricken, Kendra K. Maaß, Michael Grusch, Klaus Holzmann, Bettina Grasl‐Kraupp, Sabine Spiegl-Kreinecker, Jennifer L. Hsu, Christian Dorfer, Karl Rössler, Amedeo A. Azizi, Nicholas Foreman, Andreas Peyrl, Christine Haberler, Thomas Czech, Irene Slavc, Mariella G. Filbin, Kristian W. Pajtler, Marcel Kool, Walter Berger, Johannes Gojo
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.202917

Development of a prognostic index and screening of prognosis related genes based on an immunogenomic landscape analysis of bladder cancer
Cited by: 14
Author(s): Genyi Qu, Zhengsheng Liu, Guang Yang, Yong Xu, Maolin Xiang, Chaowei Tang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-89741-z

Differential features of chronic cough according to etiology and the simple decision tree for predicting causes
Cited by: 2
Author(s): Hyeon Kyoung Koo, Woo Kyung Bae, Joon-Shik Moon, Hyun Lee, Jin Woo Kim, Seung Hun Jang, Hyoung Kyu Yoon, Deog Kyeom Kim
Software Mentions: 4
Published: over 5 years ago

10.1155/2014/145243

Integration of High-Volume Molecular and Imaging Data for Composite Biomarker Discovery in the Study of Melanoma
Cited by: 7
Author(s): Κωνσταντίνος Μούτσελος, Ilias Maglogiannis, Aristotelis Chatziioannou
Software Mentions: 4
Published: over 12 years ago

10.3389/fgene.2020.555865

Identification of Tumor Microenvironment-Related Prognostic Biomarkers in Luminal Breast Cancer
Cited by: 15
Author(s): Yanyan Wang, Mingzhi Zhu, Feng Guo, Yi Song, Xunjie Fan, Guijun Qin
Software Mentions: 4
Published: almost 6 years ago

10.1080/21623945.2020.1829852

Curated gene expression dataset of differentiating 3T3-L1 adipocytes under pharmacological and genetic perturbations
Cited by: 7
Author(s): Mahmoud Ahmed, Do Sik Min, Deok Ryong Kim
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-90250-2

Proteomic analysis-based discovery of a novel biomarker that differentiates intestinal Behçet’s disease from Crohn’s disease
Cited by: 4
Author(s): Jihye Park, Da-Eun Jeong, Youn Wook Chung, Seunghan Han, Da Hye Kim, Jongwook Yu, Jae Hee Cheon, Ji Hwan Ryu
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.597803

A Novel Transcriptome Integrated Network Approach Identifies the Key Driver lncRNA Involved in Cell Cycle With Chromium (VI)-Treated BEAS-2B Cells
Cited by: 0
Author(s): Pai Zheng, Yulin Kang, Shuo Han, Huimin Feng, Feizai Ha, Changmao Long, Di Zhou, Guiping Hu, Zhangjian Chen, Zengmiao Wang, Tiancheng Wang, Guang Jia
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/8047146

A Novel Schizophrenia Diagnostic Model Based on Statistically Significant Changes in Gene Methylation in Specific Brain Regions
Cited by: 3
Author(s): Donghua Zou, Yufen Qiu, Rongjie Li, Youshi Meng, Yuan Wu
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.15807

Comprehensive mapping of the effects of azacitidine on DNA methylation, repressive/permissive histone marks and gene expression in primary cells from patients with MDS and MDS-related disease
Cited by: 39
Author(s): Magnus Tobiasson, Hani Abdulkadir, Andreas Lennartsson, Shintaro Katayama, Francesco Marabita, Annick De Paepe, Mohsen Karimi, Kaarel Krjutškov, Elisabet Einarsdottir, Michael Grövdal, Monika Jansson, Asmaa Ben Azenkoud, Lina Corddedu, Sören Lehmann, Karl Ekwall, Juha Kere, Eva Hellström‐Lindberg, Johanna Ungerstedt
Software Mentions: 4
Published: over 9 years ago

10.1111/pbi.13339

Balancing the double‐edged sword effect of increased resistant starch content and its impact on rice texture: its genetics and molecular physiological mechanisms
Cited by: 33
Author(s): Sabiha Parween, Joanne Jerenice Añonuevo, Vito M. Butardo, Gopal Misra, Roslen Anacleto, Cindy Llorente, Ondřej Kosík, Marissa V. Romero, E.H. Bandonill, Merlyn S. Mendioro, Alison Lovegrove, Alisdair R. Fernie, Yariv Brotman, Nese Sreenivasulu
Software Mentions: 4
Published: over 6 years ago

10.1155/2019/1742341

Based on Integrated Bioinformatics Analysis Identification of Biomarkers in Hepatocellular Carcinoma Patients from Different Regions
Cited by: 9
Author(s): Linxin Teng, Kaiyuan Wang, Yu Liu, Yanxia Ma, Weiping Chen, Lei Bi
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41419-021-04144-2

LncRNA PCBP1-AS1-mediated AR/AR-V7 deubiquitination enhances prostate cancer enzalutamide resistance
Cited by: 19
Author(s): Boya Zhang, Mingpeng Zhang, Chunyi Shen, Guancong Liu, Fan Zhang, Jingyu Hou, Weitao Yao
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/4582082

Identification of a Two-m6A RNA Methylation Regulator Risk Signature as an Independent Prognostic Biomarker in Papillary Renal Cell Carcinoma by Bioinformatic Analysis
Cited by: 5
Author(s): Fusheng Yang, Guojiang Zhao, Liyuan Ge, Yimeng Song, Kai Hong, Hongxian Zhang, Cheng Liu, Hong Peng, Lulin Ma
Software Mentions: 4
Published: over 5 years ago

10.3389/fendo.2021.665666

Comprehensive Analysis of the Expression and Prognostic Value of SPINT1/2 in Breast Carcinoma
Cited by: 3
Author(s): Qi Wu, Guang Yin, Jing Luo, Yingzi Zhang, Tiantian Ai, Jiao Tian, Yudi Jin, Jinwei Lei, Shengchun Liu
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.1001126

Sex Chromosome-Specific Regulation in the Drosophila Male Germline But Little Evidence for Chromosomal Dosage Compensation or Meiotic Inactivation
Cited by: 123
Author(s): Colin D. Meiklejohn, Emily L. Landeen, Jodi M. Cook, Sarah B. Kingan, Daven C. Presgraves
Software Mentions: 4
Published: about 15 years ago

10.1155/2021/6616434

Weighted Gene Coexpression Network Analysis Uncovers Critical Genes and Pathways for Multiple Brain Regions in Parkinson’s Disease
Cited by: 4
Author(s): Jianjun Huang, Li Liu, Lingling Qin, Hehua Huang, Li Xue
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.3000976

Cortical morphology at birth reflects spatiotemporal patterns of gene expression in the fetal human brain
Cited by: 33
Author(s): Gareth Ball, Jakob Seidlitz, Jonathan O’Muircheartaigh, Ralica Dimitrova, Daphna Fenchel, Antonios Makropoulos, Daan Christiaens, Andreas Schuh, Jonathan Passerat–Palmbach, Jana Hutter, Lucilio Cordero‐Grande, Emer Hughes, Anthony N. Price, Jo Hajnal, Daniel Rueckert, Emma C. Robinson, A. David Edwards
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pbio.2004986

Canonical PRC2 function is essential for mammary gland development and affects chromatin compaction in mammary organoids
Cited by: 10
Author(s): Ewa M. Michalak, Michael J. G. Milevskiy, Rachel Joyce, Johanna F. Dekkers, Paul Jamieson, Bhupinder Pal, Caleb A. Dawson, Yifang Hu, Stuart H. Orkin, Warren S. Alexander, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Software Mentions: 4
Published: about 8 years ago

10.1155/2020/8886914

An Integrative Analysis Reveals the Potential Mechanism between Herbal Medicine Yinchen and Immunoregulation in Hepatocellular Carcinoma
Cited by: 3
Author(s): Zhuomao Mo, Zhirui Cao, Ling Yu, Yongdan Wang, Pan Li, You-Wu Lin, Shijun Zhang
Software Mentions: 4
Published: over 5 years ago

10.3389/fendo.2019.00735

Reduced Expression of PLCXD3 Associates With Disruption of Glucose Sensing and Insulin Signaling in Pancreatic β-Cells
Cited by: 18
Author(s): Hayat Aljaibeji, Debasmita Mukhopadhyay, Abdul Khader Mohammed, Sarah Dhaiban, Mahmood Yaseen Hachim, Noha Mousaad Elemam, Nabil Sulaiman, Albert Salehi, Jalal Taneera
Software Mentions: 4
Published: almost 7 years ago

10.1097/MD.0000000000025008

PLCG2 as a potential indicator of tumor microenvironment remodeling in soft tissue sarcoma
Cited by: 10
Author(s): Zhengtian Li, Rong Zhao, Weibo Yang, Chan Li, Jun Huang, Zhenpei Wen, Gang Du, Lingling Jiang
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.13142

Transcriptional frontloading contributes to cross‐tolerance between stressors
Cited by: 8
Author(s): Michael T. Collins, Melody S. Clark, John I. Spicer, Manuela Truebano
Software Mentions: 4
Published: almost 6 years ago

10.1002/cam4.1397

Development and validation of an individualized diagnostic signature in thyroid cancer
Cited by: 16
Author(s): Li-ou Han, Xinyu Li, Mingming Cao, Yan Cao, Lihong Zhou
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.11931

Establishment of a ferroptosis-related gene signature for prognosis in lung adenocarcinoma patients
Cited by: 4
Author(s): Jingjing Cai, Chunyan Li, Hongsheng Li, Xiaoxiong Wang, Yunyun Zhou
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.11074

Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.3859

How to normalize metatranscriptomic count data for differential expression analysis
Cited by: 31
Author(s): Heiner Klingenberg, Peter Meinicke
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0115964

A Note on an Exon-Based Strategy to Identify Differentially Expressed Genes in RNA-Seq Experiments
Cited by: 12
Author(s): Asta Laiho, Laura L. Elo
Software Mentions: 4
Published: over 11 years ago

10.1155/2019/7518374

Network Pharmacology and Bioinformatics Approach Reveals the Therapeutic Mechanism of Action of Baicalein in Hepatocellular Carcinoma
Cited by: 34
Author(s): Chongyang Ma, Tian Xu, Xiaoguang Sun, Shuang Zhang, Shu-Ling Liu, Shuning Fan, Chaofang Lei, Fei‐Fei Tang, Changming Zhai, Changxiang Li, Jian Luo, Qingguo Wang, Wei Wei, Xueqian Wang, Fang Cheng
Software Mentions: 4
Published: over 7 years ago

Projects: bioconductor: limma

Science Score: 78/100

Bonuses:

Penalties:

Papers Mentioning limma 7,776