bioconductor: iClusterPlus | Projects

10.3389/fonc.2020.00423

Computational Oncology in the Multi-Omics Era: State of the Art
Cited by: 55
Author(s): Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 46
Published: over 4 years ago

Public data and open source tools for multi-assay genomic investigation of disease
Cited by: 47
Author(s): Lavanya Kannan, Marcel Ramos, Angela Re, Nehmé El-Hachem, Zhaleh Safikhani, Deena M.A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe‐Kains, Levi Waldron
Software Mentions: 15
Published: about 9 years ago

10.1186/s12859-016-1455-1

MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration
Cited by: 20
Author(s): Carles Hernández-Ferrer, Carlos Ruiz‐Arenas, Alba Beltran-Gomila, Juan R. González
Software Mentions: 14
Published: almost 8 years ago

10.1093/bioinformatics/btz704

Spectrum: fast density-aware spectral clustering for single and multi-omic data
Cited by: 43
Author(s): Christopher R. John, David S. Watson, Michael R. Barnes, Costantino Pitzalis, Myles Lewis
Software Mentions: 10
Published: over 5 years ago

10.1177/1177932219899051

Multi-omics Data Integration, Interpretation, and Its Application
Cited by: 527
Author(s): Indhupriya Subramanian, Srikant Verma, Sanjiv Kumar, Abhay Jere, Krishanpal Anamika
Software Mentions: 8
Published: almost 5 years ago

10.1093/bfgp/elx018

Epigenetic regulation of gene expression in cancer: techniques, resources and analysis
Cited by: 91
Author(s): Luciane T. Kagohara, Genevieve Stein-O’Brien, Dylan Z. Kelley, Emily Flam, Heather C. Wick, Ludmila Danilova, Hariharan Easwaran, Alexander V. Favorov, Jiang Qian, Daria A. Gaykalova, Elana J. Fertig
Software Mentions: 7
Published: over 7 years ago

10.1186/s40246-021-00323-6

An ensemble of the iCluster method to analyze longitudinal lncRNA expression data for psoriasis patients
Cited by: 2
Author(s): Suyan Tian, Chi Wang
Software Mentions: 6
Published: over 3 years ago

10.1186/s12967-021-02705-9

Eight-lncRNA signature of cervical cancer were identified by integrating DNA methylation, copy number variation and transcriptome data
Cited by: 23
Author(s): Qihang Zhong, Minzhen Lu, Wei Yuan, Yueyi Cui, Hanqiang Ouyang, Yong Fan, Zhaohui Wang, Congying Wu, Jie Qiao, Jing Hang
Software Mentions: 5
Published: almost 4 years ago

10.3389/fcell.2021.721505

Integrated Analysis of Copy Number Variation, Microsatellite Instability, and Tumor Mutation Burden Identifies an 11-Gene Signature Predicting Survival in Breast Cancer
Cited by: 5
Author(s): Xin Jin, Yan Junfeng, Chuanzhi Chen, Yi Chen, Wen‐Shih Huang
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2019.00371

High-Order Correlation Integration for Single-Cell or Bulk RNA-seq Data Analysis
Cited by: 9
Author(s): Hui Tang, Tao Zeng, Luonan Chen
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.607817

Multi-Omics Data Fusion for Cancer Molecular Subtyping Using Sparse Canonical Correlation Analysis
Cited by: 8
Author(s): Qi Lin, Wei Wang, Tan Wu, Lina Zhu, Lingli He, Xin Wang
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.01052

A Novel Method for Cancer Subtyping and Risk Prediction Using Consensus Factor Analysis
Cited by: 9
Author(s): Duc Tran, Hung Son Nguyen, Uyen Phuong Le, George Bebis, Hung N. Luu, Tin Nguyen
Software Mentions: 5
Published: over 4 years ago

10.1186/s13059-020-02230-w

Comprehensive integrative profiling of upper tract urothelial carcinomas
Cited by: 27
Author(s): Xiaoping Su, Xiaofan Lu, Sehrish K. Bazai, Éva Compérat, Roger Mouawad, Hui Yao, Morgan Rouprêt, Jean Philippe Spano, David Khayat, Irwin Davidson, Nizar Tannir, Fangrong Yan, Gabriel G. Malouf
Software Mentions: 4
Published: almost 4 years ago

10.3389/fgene.2020.578345

Integration of Online Omics-Data Resources for Cancer Research
Cited by: 43
Author(s): Tonmoy Das, Geoffroy Andrieux, Musaddeque Ahmed, Sajib Chakraborty
Software Mentions: 4
Published: about 4 years ago

10.1016/j.ebiom.2015.07.017

Integration of copy number and transcriptomics provides risk stratification in prostate cancer: A discovery and validation cohort study
Cited by: 217
Author(s): Helen Ross-Adams, Alastair Lamb, Mark J. Dunning, Silvia Halim, Johan Lindberg, Charles E. Massie, Lars Egevad, Roslin Russell, Antonio Ramos-Montoya, Sarah L. Vowler, Naomi L. Sharma, Jonathan Kay, Hayley C. Whitaker, Jeremy Clark, Rachel Hurst, Vincent Gnanapragasam, Nimish Shah, Anne Y. Warren, Christopher S. Cooper, Andy G. Lynch, Rory Stark, Ian G. Mills, Henrik Grönberg, David E. Neal
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-016-1184-5

Stepwise iterative maximum likelihood clustering approach
Cited by: 12
Author(s): Alok Sharma, Daichi Shigemizu, Keith A. Boroevich, Yosvany López, Yoichiro Kamatani, Michiaki Kubo, Tatsuhiko Tsunoda
Software Mentions: 4
Published: over 8 years ago

10.1093/bib/bbz121

A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping
Cited by: 43
Author(s): Anita Sathyanarayanan, Rohit Gupta, Erik W. Thompson, Dale R. Nyholt, Denis C. Bauer, Shivashankar H. Nagaraj
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj-cs.584

Machine learning analysis of TCGA cancer data
Cited by: 9
Author(s): José Liñares-Blanco, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms20051175

Molecular Characterization of Non-responders to Chemotherapy in Serous Ovarian Cancer
Cited by: 9
Author(s): Megan McDonald, E. Salinas, Eric J. Devor, A.M. Newtson, Kristina W. Thiel, Michael J. Goodheart, David Bender, Brian J. Smith, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmolb.2020.590842

Multi-Omics Approaches to Improve Mitochondrial Disease Diagnosis: Challenges, Advances, and Perspectives
Cited by: 16
Author(s): Justine Labory, Morgane Fierville, Samira Ait-El-Mkadem, Sylvie Bannwarth, Véronique Paquis‐Flucklinger, Silvia Bottini
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-017-1970-8

2D–EM clustering approach for high-dimensional data through folding feature vectors
Cited by: 7
Author(s): Alok Sharma, Piotr J. Kamola, Tatsuhiko Tsunoda
Software Mentions: 3
Published: about 7 years ago

10.1093/bioinformatics/btz058

NEMO: cancer subtyping by integration of partial multi-omic data
Cited by: 115
Author(s): Nimrod Rappoport, Ron Shamir
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1009224

Evaluation and comparison of multi-omics data integration methods for cancer subtyping
Cited by: 43
Author(s): Ran Duan, Lin Gao, Yong Gao, Yuxuan Hu, Xu Han, Ming‐Feng Huang, Kuo Song, Hongda Wang, Yun Dong, Chaoqun Jiang, Chenxing Zhang, Songwei Jia
Software Mentions: 3
Published: over 3 years ago

10.1186/s12885-021-07888-4

Multi-omics analysis of genomics, epigenomics and transcriptomics for molecular subtypes and core genes for lung adenocarcinoma
Cited by: 13
Author(s): Yue Zhao, Gao Yuan-fu, Xiaodong Xu, Ji-Wu Zhou, He Wang
Software Mentions: 2
Published: almost 4 years ago

10.3390/genes12040526

Cancer Subtype Recognition Based on Laplacian Rank Constrained Multiview Clustering
Cited by: 2
Author(s): Shuguang Ge, Xuesong Wang, Yuhu Cheng, Jian Liu
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2021.718915

Multi-View Spectral Clustering Based on Multi-Smooth Representation Fusion for Cancer Subtype Prediction
Cited by: 6
Author(s): Jian Liu, Shuguang Ge, Yuhu Cheng, Xuesong Wang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-70229-1

Multi-view clustering for multi-omics data using unified embedding
Cited by: 15
Author(s): Sayantan Mitra, Sriparna Saha, Mohammed Hasanuzzaman
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.00744

Multi-view Subspace Clustering Analysis for Aggregating Multiple Heterogeneous Omics Data
Cited by: 12
Author(s): Qianqian Shi, Bing Hu, Tao Zeng, Chuanchao Zhang
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22115613

Molecular Landscape and Therapeutic Strategies in Cholangiocarcinoma: An Integrated Translational Approach towards Precision Medicine
Cited by: 7
Author(s): M Casadio, Francesca Biancaniello, Diletta Overi, Rosanna Venere, Guido Carpino, Eugenio Gaudio, Domenico Alvaro, Vincenzo Cardinale
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-017-4018-6

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics
Cited by: 4
Author(s): Zhongming Zhao, Zhandong Liu, Ken Chen, Yan Guo, Genevera I. Allen, Jiajie Zhang, W. Jim Zheng, Jianhua Ruan
Software Mentions: 1
Published: about 7 years ago

10.1016/j.csbj.2020.11.018

Advances on diagnostic biomarkers of pancreatic ductal adenocarcinoma: A systems biology perspective
Cited by: 13
Author(s): Wuhu Zhang, Wenquan Wang, Xuan Han, Heli Gao, Tianjiao Li, Shuaishuai Xu, Shuo Li, Huaxiang Xu, Hao Li, Long‐Yun Ye, Xuan Lin, Chifei Wu, Long Jiang, Xianjun Yu, Liang Liu
Software Mentions: 1
Published: almost 5 years ago

Ecosyste.ms: Papers

Projects: bioconductor: iClusterPlus

Papers Mentioning iClusterPlus 32