Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bfgp/elx018

https://doi.org/10.1093/bfgp/elx018

Epigenetic regulation of gene expression in cancer: techniques, resources and analysis

Cited by: 91
Author(s): Luciane T. Kagohara, Genevieve Stein-O’Brien, Dylan Z. Kelley, Emily Flam, Heather C. Wick, Ludmila Danilova, Hariharan Easwaran, Alexander V. Favorov, Jiang Qian, Daria A. Gaykalova, Elana J. Fertig
Published: over 7 years ago

Software Mentions 7

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: CoGAPS
Coordinated Gene Activity in Pattern Sets
Papers that mentioned: 14
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: iClusterPlus
Integrative clustering of multi-type genomic data
Papers that mentioned: 32
bioconductor: MethylMix
MethylMix: Identifying methylation driven cancer genes
Papers that mentioned: 53
cran: iCluster
Integrative clustering of multiple genomic data types
Papers that mentioned: 134
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233