Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: SIAMCAT

https://packages.ecosyste.ms/registries/bioconductor.org/packages/SIAMCAT

Statistical Inference of Associations between Microbial Communities And host phenoTypes
1 version
Latest release: 12 months ago
9,931 downloads total

Papers Mentioning SIAMCAT 6

10.3390/cancers12051142

Integrative Analysis of Fecal Metagenomics and Metabolomics in Colorectal Cancer
Cited by: 55
Author(s): Marc Clos-García, Koldo Garcia, Cristina Alonso, Marta Iruarrizaga‐Lejarreta, Mauro D’Amato, Anais Crespo, Águeda Iglesias, Joaquín Cubiella, Luís Bujanda, Juan Manuel Falcón‐Pérez
Software Mentions: 14
Published: over 4 years ago

10.3390/cancers12123800

Dynamics of Fecal Microbiota with and without Invasive Cervical Cancer and Its Application in Early Diagnosis
Cited by: 14
Author(s): Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae‐Ho Shin
Software Mentions: 11
Published: almost 4 years ago

10.1186/s13059-021-02306-1

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
Cited by: 101
Author(s): Jakob Wirbel, Konrad Zych, Morgan Essex, Nicolai Karcher, Ece Kartal, Guillem Salazar, Peer Bork, Shinichi Sunagawa, Georg Zeller
Software Mentions: 6
Published: over 3 years ago

10.1016/j.vaccine.2021.07.076

The fecal microbiome and rotavirus vaccine immunogenicity in rural Zimbabwean infants
Cited by: 16
Author(s): Ruairi C. Robertson, James Church, Thaddeus J. Edens, Kuda Mutasa, Hyun Min Geum, Iman Baharmand, S K Gill, Robert Ntozini, Bernard Chasekwa, Lynnea Carr, Florence D Majo, Beth D. Kirkpatrick, Benjamin Lee, Lawrence H. Moulton, Jean H. Humphrey, Andrew J. Prendergast, Amee R. Manges, Shine Trial Team
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.42693

Extensive transmission of microbes along the gastrointestinal tract
Cited by: 270
Author(s): Thomas Sebastian Benedikt Schmidt, Matthew R. Hayward, Luís Pedro Coelho, Simone S. Li, Paul Igor Costea, Anita Y. Voigt, Jakob Wirbel, Oleksandr M. Maistrenko, Renato Alves, Emma Bergsten, Carine de Beaufort, Iradj Sobhani, Anna Heintz‐Buschart, Shinichi Sunagawa, Georg Zeller, Paul Wilmes, Peer Bork
Software Mentions: 3
Published: over 5 years ago

10.1093/bioinformatics/btaa971

Predicting microbiomes through a deep latent space
Cited by: 16
Author(s): Beatriz García-Jiménez, J. A. Muñoz, Sara Cabello, Joaquı́n Medina, Mark D. Wilkinson
Software Mentions: 1
Published: almost 4 years ago