Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.42693

https://doi.org/10.7554/eLife.42693

Extensive transmission of microbes along the gastrointestinal tract

Cited by: 270
Author(s): Thomas Sebastian Benedikt Schmidt, Matthew R. Hayward, Luís Pedro Coelho, Simone S. Li, Paul Igor Costea, Anita Y. Voigt, Jakob Wirbel, Oleksandr M. Maistrenko, Renato Alves, Emma Bergsten, Carine de Beaufort, Iradj Sobhani, Anna Heintz‐Buschart, Shinichi Sunagawa, Georg Zeller, Paul Wilmes, Peer Bork
Published: over 5 years ago

Software Mentions 3

bioconductor: SIAMCAT

Statistical Inference of Associations between Microbial Communities And host phenoTypes
Papers that mentioned: 6

pypi: iRep

calcualte iRep replication rates from metagenome sequencing
Papers that mentioned: 29

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306