bioconductor: PAST | Projects | Ecosyste.ms: Papers

10.1177/0022034517729998

Saliva-Derived Commensal and Pathogenic Biofilms in a Human Gingiva Model
Cited by: 33
Author(s): Jeroen Kees Buskermolen, Marleen M. Janus, Sanne Roffel, Bastiaan P. Krom, Susan Gibbs
Software Mentions: 2
Published: over 8 years ago

10.1080/14756366.2016.1266344

Metabolite profiling of ascidianStyela plicatausing LC–MS with multivariate statistical analysis and their antitumor activity
Cited by: 16
Author(s): Satheesh Kumar Palanisamy, Daniela Trisciuoglio, Clemens Zwergel, Donatella Del Bufalo, Antonello Mai
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0096605

Changes in the Bacterial Community of Soil from a Neutral Mine Drainage Channel
Cited by: 70
Author(s): Letícia Bianca Pereira, Renato Vicentini, Laura Maria Mariscal Ottoboni
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2017.00245

Different Types of Diatom-Derived Extracellular Polymeric Substances Drive Changes in Heterotrophic Bacterial Communities from Intertidal Sediments
Cited by: 44
Author(s): Julio Bohórquez, Terry J. McGenity, Sokratis Papaspyrou, Emilio García‐Robledo, Alfonso Corzo, Graham J. C. Underwood
Software Mentions: 2
Published: over 9 years ago

10.1186/s13072-017-0165-x

Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning
Cited by: 17
Author(s): Gabriel Gutiérrez, Gonzalo Millán-Zambrano, Daniel A. Medina, Antonio Jordán-Pla, Jose E. Pérez-Ortı́n, Xenia Peñate, Sebastián Chávez
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0131607

Inter-Individual Differences in the Oral Bacteriome Are Greater than Intra-Day Fluctuations in Individuals
Cited by: 46
Author(s): Yukuto Sato, Junya Yamagishi, Riu Yamashita, Natsuko O. Shinozaki, Bin Yue, Takuji Yamada, Masayuki Yamamoto, Masao Nagasaki, Akito Tsuboi
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0256969

Is soil management system really important? comparison of microbial community diversity and structure in soils managed under organic and conventional regimes with some view on soil properties
Cited by: 6
Author(s): Kamila Rachwał, Klaudia Gustaw, Waldemar Kazimierczak, Adam Waśko
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0197225

Pioneer farming in southeast Europe during the early sixth millennium BC: Climate-related adaptations in the exploitation of plants and animals
Cited by: 41
Author(s): Maria Ivanova, Bea De Cupere, Jonathan Ethier, Elena Marinova
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0153061

Biocomplexity in Populations of European Anchovy in the Adriatic Sea
Cited by: 10
Author(s): Paolo Ruggeri, Andrea Splendiani, Giulia Occhipinti, Tatiana Fioravanti, Alberto Santojanni, Iole Leonori, Andrea De Felice, Enrico Arneri, Gabriele Procaccini, Gaetano Catanese, Vjekoslav Tičina, A. Bonanno, Paola Nisi Cerioni, Massimo Giovannotti, W. Stewart Grant, Vincenzo Caputo Barucchi
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2014.00786

Chemoautotrophic growth of ammonia-oxidizing Thaumarchaeota enriched from a pelagic redox gradient in the Baltic Sea
Cited by: 33
Author(s): Carlo Berg, Luisa Listmann, Verona Vandieken, Angela Vogts, Klaus Jürgens
Software Mentions: 2
Published: over 11 years ago

10.1111/jeb.12127

Patterns and implications of extensive heterochrony in carnivoran cranial suture closure
Cited by: 31
Author(s): Anjali Goswami, Loraine J. Foley, Vera Weisbecker
Software Mentions: 2
Published: about 13 years ago

10.3389/fmicb.2017.01385

Bacteria Associated to Plants Naturally Selected in a Historical PCB Polluted Soil Show Potential to Sustain Natural Attenuation
Cited by: 23
Author(s): Lorenzo Vergani, Francesca Mapelli, Ramona Marasco, Elena Crotti, Marco Fusi, Antonio Di Guardo, Stefano Armiraglio, Daniele Daffonchio, Sara Borin
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.00983

Characterization of the Castanopsis carlesii Deadwood Mycobiome by Pacbio Sequencing of the Full-Length Fungal Nuclear Ribosomal Internal Transcribed Spacer (ITS)
Cited by: 17
Author(s): Witoon Purahong, Ausana Mapook, Yuting Wu, Chaur-Tzuhn Chen
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2019.01414

Effect of Single Dose of Antimicrobial Administration at Birth on Fecal Microbiota Development and Prevalence of Antimicrobial Resistance Genes in Piglets
Cited by: 14
Author(s): Mohamed Zeineldin, Ameer Megahed, Brandi Burton, Benjamin Blair, Brian Aldridge, James Lowe
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0113253

Progressive Degradation of Crude Oil n-Alkanes Coupled to Methane Production under Mesophilic and Thermophilic Conditions
Cited by: 56
Author(s): Lei Cheng, Shengbao Shi, Qiang Li, Jianfa Chen, Hui Zhang, Yahai Lu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0207495

Prevalence of gastrointestinal parasites in bonnet macaque and possible consequences of their unmanaged relocations
Cited by: 11
Author(s): Shanthala Kumar, P. Sundararaj, Honnavalli N. Kumara, Arijit Pal, Kumar Santhosh, S. Vinoth
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2015.00379

Cropping systems modulate the rate and magnitude of soil microbial autotrophic CO2 fixation in soil
Cited by: 39
Author(s): Xin Wu, Tida Ge, Wei Wang, Yuan Huang, Carl‐Eric Wegner, Zhenke Zhu, Andrew S. Whiteley, Jinshui Wu
Software Mentions: 2
Published: about 11 years ago

10.3389/fmicb.2020.00012

The Role of Microbial Mats in the Removal of Hexavalent Chromium and Associated Shifts in Their Bacterial Community Composition
Cited by: 11
Author(s): Raeid M. M. Abed, Mary Shanti, T. S. Muthukrishnan, Zayana Al-Riyami, Bernhard Pracejus, Daniel Moraetis
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2016.01782

Distinct Factors Shape Aquatic and Sedimentary Microbial Community Structures in the Lakes of Western China
Cited by: 47
Author(s): Jian Yang, Hongchen Jiang, Geng Wu, Wen Li, Guojing Zhang
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0078761

Additive Partitioning of Coral Reef Fish Diversity across Hierarchical Spatial Scales throughout the Caribbean
Cited by: 20
Author(s): Vanessa Francisco, Jesús Ernesto Arias‐González
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2018.00495

Host Age Affects the Development of Southern Catfish Gut Bacterial Community Divergent From That in the Food and Rearing Water
Cited by: 47
Author(s): Zhimin Zhang, Dapeng Li, Mohamed M. Refaey, Weigang Xu, Rong Tang, Li Li
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2018.03275

The Influence of Bt Maize Cultivation on Communities of Arbuscular Mycorrhizal Fungi Revealed by MiSeq Sequencing
Cited by: 15
Author(s): Huilan Zeng, Wang Zhong, Fengxiao Tan, Yinghua Shu, Ying Feng, Jianwu Wang
Software Mentions: 2
Published: over 7 years ago

10.1098/rspb.2020.1429

De novo biosynthesis of simple aromatic compounds by an arthropod ( Archegozetes longisetosus )
Cited by: 3
Author(s): Adrian Brückner, Martin Kaltenpoth, Michael Heethoff
Software Mentions: 2
Published: almost 6 years ago

10.1098/rspb.2021.0181

Craniofacial development illuminates the evolution of nightbirds (Strisores)
Cited by: 9
Author(s): Guillermo Navalón, Sergio M. Nebreda, Jen A. Bright, Matteo Fabbri, Roger B. J. Benson, Bhart Anjan S. Bhullar, Jesús Marugán‐Lobón, Emily J. Rayfield
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.01796

Biases in Prokaryotic Community Amplicon Sequencing Affected by DNA Extraction Methods in Both Saline and Non-saline Soil
Cited by: 12
Author(s): Kehui Xie, Yong Deng, Xuze Zhang, Xueting Wang, Guangbo Kang, Liang Bai, He Huang
Software Mentions: 2
Published: almost 8 years ago

10.1002/prca.201900058

Dysbiosis of the Oral Ecosystem in Severe Congenital Neutropenia Patients
Cited by: 5
Author(s): Egija Zaura, Bernd W. Brandt, Mark J. Buijs, Gülnur Emingil, Merve Ergüz, Deniz Yılmaz Karapınar, Burç Pekpinarli, Kai Bao, Georgios N. Belibasakis, Nagihan Bostancı
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.00279

Cultivation-Independent and Cultivation-Dependent Analysis of Microbes in the Shallow-Sea Hydrothermal System Off Kueishantao Island, Taiwan: Unmasking Heterotrophic Bacterial Diversity and Functional Capacity
Cited by: 23
Author(s): Kai Tang, Yao Zhang, Dan Lin, Han Yu, Chen‐Tung Arthur Chen, Deli Wang, Yu‐Shih Lin, Jia Sun, Qiang Zheng, Nianzhi Jiao
Software Mentions: 2
Published: over 8 years ago

10.1007/s10493-020-00587-y

Patterns of intraspecific morphological variability in soil mites reflect their dispersal ability
Cited by: 1
Author(s): Julia Baumann
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.02903

Water Quality and Total Microbial Load: A Double-Threshold Identification Procedure Intended for Space Applications
Cited by: 6
Author(s): Stefano Amalfitano, Caterina Levantesi, Laurent Garrelly, D. Giacosa, Francesca Bersani, Simona Rossetti
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.02252

Resistance Breeding of Common Bean Shapes the Physiology of the Rhizosphere Microbiome
Cited by: 34
Author(s): Lucas William Mendes, Maria Luíza Morais Barreto de Chaves, Mariley de Cássia da Fonseca, Rodrigo Mendes, Jos M. Raaijmakers, Siu Mui Tsai
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.01585

Succession and Fermentation Products of Grass Carp (Ctenopharyngodon idellus) Hindgut Microbiota in Response to an Extreme Dietary Shift
Cited by: 68
Author(s): Yao Tong Hao, Shan Wu, Fan Xiong, Ngoc Tuan Tran, Ivan Jakovlić, Hong Zou, Wen Xiang Li, Gui Tang Wang
Software Mentions: 2
Published: almost 9 years ago

10.1098/rsos.160672

Earliest filter-feeding pterosaur from the Jurassic of China and ecological evolution of Pterodactyloidea
Cited by: 29
Author(s): Chaowei Zhou, Ke‐Qin Gao, Haiyang Yi, Jinzhuang Xue, Quanguo Li, Richard C. Fox
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0068429

Invasion Is a Community Affair: Clandestine Followers in the Bacterial Community Associated to Green Algae, Caulerpa racemosa, Track the Invasion Source
Cited by: 58
Author(s): Tânia Aires, Ester A. Serrão, Gary A. Kendrick, Carlos M. Duarte, Sophie Arnaud–Haond
Software Mentions: 2
Published: almost 13 years ago

10.3389/fmicb.2016.00752

Snapshot of a Bacterial Microbiome Shift during the Early Symptoms of a Massive Sponge Die-Off in the Western Mediterranean
Cited by: 36
Author(s): Andrea Blanquer, María Jesús Uriz, Emma Cebrián, Pierre E. Galand
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0219015

Effects of sampling site, season, and substrate on foraminiferal assemblages grown from propagule banks from lagoon sediments of Corfu Island (Greece, Ionian Sea)
Cited by: 7
Author(s): Anna E. Weinmann, Susan T. Goldstein, Maria Triantaphyllou, Martin R. Langer
Software Mentions: 2
Published: almost 7 years ago

10.1098/rsos.172130

Morphometric assessment of pterosaur jaw disparity
Cited by: 11
Author(s): Charlie A. Navarro, Elizabeth Martin‐Silverstone, Thomas L. Stubbs
Software Mentions: 2
Published: about 8 years ago

10.1098/rsos.172307

A method for deducing neck mobility in plesiosaurs, using the exceptionally preserved Nichollssaura borealis
Cited by: 7
Author(s): Ramon Nagesan, Donald M. Henderson, J. G. C. Anderson
Software Mentions: 2
Published: almost 8 years ago

10.1098/rsos.180825

On the relationship between maxillary molar root shape and jaw kinematics in Australopithecus africanus and Paranthropus robustus
Cited by: 12
Author(s): Kornelius Kupczik, Viviana Toro‐Ibacache, Gabriele A. Macho
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.00857

Rhizosphere Protists Change Metabolite Profiles in Zea mays
Cited by: 19
Author(s): Anke Kuppardt, Thomas Fester, Claus Härtig, Antonis Chatzinotas
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0202446

Ruminal methane emissions, metabolic, and microbial profile of Holstein steers fed forage and concentrate, separately or as a total mixed ration
Cited by: 24
Author(s): Rajaraman Bharanidharan, Selvaraj Arokiyaraj, Eun Bae Kim, Young Moo Lee, Yang Won Woo, Youngjun Na, Danil Kim, Kyoung Hoon Kim
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2019.01937

Root-Associated Microbial Communities of Abies nordmanniana: Insights Into Interactions of Microbial Communities With Antioxidative Enzymes and Plant Growth
Cited by: 16
Author(s): Adriana M. García-Lemos, Dominik K. Großkinsky, Michaela Schiller Stokholm, Ole Lund, Mette Haubjerg Nicolaisen, Thomas Roitsch, Bjarke Veierskov, Ole Nybroe
Software Mentions: 2
Published: almost 7 years ago

10.1098/rsos.210529

Confirmed archaeological evidence of water deer in Vietnam: relics of the Pleistocene or a shifting baseline?
Cited by: 3
Author(s): Christopher Stimpson, Shawn O’Donnell, Nguyễn Thị Mai Hương, Rachael Holmes, Benjamin Utting, Thorsten Kahlert, Ryan Rabett
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.01098

Marine Group II Dominates Planktonic Archaea in Water Column of the Northeastern South China Sea
Cited by: 28
Author(s): Haodong Liu, Chuanlun L. Zhang, Chunyan Yang, Songze Chen, Zhiwei Cao, Zhiwei Zhang, Jie Tian
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0234627

Cuscuta seeds: Diversity and evolution, value for systematics/identification and exploration of allometric relationships
Cited by: 10
Author(s): Magdalena Olszewski, Meghan Dilliott, Ignacio García-Ruíz, Behrang Bendarvandi, Mihai Costea
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.02882

Low-Abundance Members of the Firmicutes Facilitate Bioremediation of Soil Impacted by Highly Acidic Mine Drainage From the Malanjkhand Copper Project, India
Cited by: 67
Author(s): Abhishek Gupta, Avishek Dutta, Jayeeta Sarkar, M. K. Panigrahi, Pinaki Sar
Software Mentions: 2
Published: over 7 years ago

10.1038/sdata.2017.47

X-ray computed tomography library of shark anatomy and lower jaw surface models
Cited by: 16
Author(s): Pepijn Kamminga, Paul W. de Bruin, Jacob Geleijns, Martin D. Brazeau
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2019.02365

Temporal Dynamics of the Soil Metabolome and Microbiome During Simulated Anaerobic Soil Disinfestation
Cited by: 44
Author(s): Shashika S. Hewavitharana, Emmi Klarer, Andrew J. Reed, Rachel Leisso, Brenton C. Poirier, Loren Honaas, David R. Rudell, Mark Mazzola
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0001682

Diversity Arrays Technology (DArT) for Pan-Genomic Evolutionary Studies of Non-Model Organisms
Cited by: 54
Author(s): Karen E. James, Harald Schneider, Stephen W. Ansell, Margaret Evers, Lavinia Robba, Grzegorz Uszyński, Niklas Pedersen, Angela E. Newton, Stephen J. Russell, Johannes Vogel, Andrzej Kilian
Software Mentions: 2
Published: over 18 years ago

10.1038/srep10044

Diversity and functions of bacterial community in drinking water biofilms revealed by high-throughput sequencing
Cited by: 70
Author(s): Yuanqing Chao, Yanping Mao, Zhiping Wang, Tong Zhang
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2020.00683

Impact of Salinity on the Gastrointestinal Bacterial Community of Theodoxus fluviatilis
Cited by: 12
Author(s): Carmen Kivistik, Jan Knobloch, Kairi Käiro, Helen Tammert, Veljo Kisand, Jan‐Peter Hildebrandt, Daniel P. R. Herlemann
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0188864

InDel marker based genetic differentiation and genetic diversity in traditional rice (Oryza sativa L.) landraces of Chhattisgarh, India
Cited by: 14
Author(s): Parmeshwar K. Sahu, Suvendu Mondal, Deepak Sharma, Gautam Vishwakarma, Vikash Kumar, Bikram Das
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2012.00422

Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change
Cited by: 51
Author(s): Sophie Charvet, Warwick F. Vincent, A. Comeau, Connie Lovejoy
Software Mentions: 2
Published: over 14 years ago

10.1038/srep23322

Habitat constraints and self-thinning shape Mediterranean red coral deep population structure: implications for conservation practice
Cited by: 39
Author(s): Alessandro Cau, Lorenzo Bramanti, Rita Cannas, María Cristina Follesa, Michela Angiolillo, Simonepietro Canese, Marzia Bo, Danila Cuccu, Katell Guizien
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-019-46173-0

Does the endometrial cavity have a molecular microbial signature?
Cited by: 98
Author(s): Andrew D. Winters, Roberto Romero, Maria Teresa Gervasi, Nardhy Gómez-López, Maria Rosa Tran, Valeria Garcia‐Flores, Percy Pacora, Eun-Jung Jung, Sonia S. Hassan, Chaur‐Dong Hsu, Kevin R. Theis
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2019.00996

Bacterial Community 16S rRNA Gene Sequencing Characterizes Riverine Microbial Impact on Lake Michigan
Cited by: 26
Author(s): Cindy H. Nakatsu, Muruleedhara N. Byappanahalli, Meredith B. Nevers
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0072126

The Nitrate Transporter (NRT) Gene Family in Poplar
Cited by: 79
Author(s): Hua Bai, Dejuan Euring, Katharina Volmer, Dennis Janz, Andrea Polle
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-019-49096-y

Miltefosine treatment reduces visceral hypersensitivity in a rat model for irritable bowel syndrome via multiple mechanisms
Cited by: 13
Author(s): Sara Botschuijver, Sophie A. van Diest, Isabelle van Thiel, Rafael Simone Saia, Anne S. Strik, Zhumei Yu, Daniele Maria-Ferreira, Olaf Welting, Dániel Keszthelyi, Gary Jennings, Sigrid E. M. Heinsbroek, Ronald P.J. Oude Elferink, Frank Schuren, Wouter J. de Jonge, René M. van den Wijngaard
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2020.571009

Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning
Cited by: 8
Author(s): Vicente Gomez-Alvarez, Randy P. Revetta
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.00792

Differing Complex Microbiota Alter Disease Severity of the IL-10−/− Mouse Model of Inflammatory Bowel Disease
Cited by: 39
Author(s): Marcia L. Hart, Aaron C. Ericsson, Craig L. Franklin
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-51709-5

Competition structured a Late Cretaceous megaherbivorous dinosaur assemblage
Cited by: 26
Author(s): Jordan C. Mallon
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-53346-4

Multi-technique comparison of atherogenic and MCD NASH models highlights changes in sphingolipid metabolism
Cited by: 29
Author(s): Sophie A. Montandon, Emmanuel Somm, Ursula Loizides‐Mangold, Claudio De Vito, Charna Dibner, François R. Jornayvaz
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-53073-w

Microbial changes in relation to oral mucositis in autologous hematopoietic stem cell transplantation recipients
Cited by: 31
Author(s): Alexa M. G. A. Laheij, Judith E. Raber-Durlacher, Renée G. A. Koppelmans, Marie-Charlotte D.N.J.M. Huysmans, Carin Potting, Stephanie J. M. van Leeuwen, Mette D. Hazenberg, Michael T. Brennan, Inger von Bültzingslöwen, Jan‐Erik Johansson, J.J. de Soet, Thijs M. Haverman, Mark J. Buijs, Bernd W. Brandt, F.R. Rozema, Nicole M. A. Blijlevens, Egija Zaura
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-53769-z

Wild specimens of sand fly phlebotomine Lutzomyia evansi, vector of leishmaniasis, show high abundance of Methylobacterium and natural carriage of Wolbachia and Cardinium types in the midgut microbiome
Cited by: 16
Author(s): Rafael José Vivero, Marcela Villegas-Plazas, Gloria Cadavid-Restrepo, Claudia Ximena Moreno Herrera, Sandra Uribe, Howard Junca
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-53036-1

Brazilian montane rainforest expansion induced by Heinrich Stadial 1 event
Cited by: 11
Author(s): Jorge Luiz Diaz Pinaya, Francisco W. Cruz, Gregório Cardoso Tápias Ceccantini, Pedro Luiz Pizzigatti Corrêa, Nigel C. A. Pitman, Felipe Vemado, Maria del C. Armen S. Lopez, Augusto José Pereira Filho, Carlos Henrique Grohmann, Cristiano Mazur Chiessi, Nicolás Misailidis Stríkis, Ingrid Horák‐Terra, Walter Hugo Lopez Pinaya, Vanda Brito de Medeiros, Rudney de Almeida Santos, Thomas Kenji Akabane, Maicon A. Silva, Rachid Cheddadi, Mark B. Bush, Alexandra‐Jane Henrot, Louis François, Alain Hambuckers, Frédéric Boyer, Matthieu Carré, Éric Coissac, Gentile Francesco Ficetola, Kangyou Huang, Anne-Marie Lézine, Majda Nourelbait, Ali Rhoujjati, Pierre Taberlet, Fausto O. Sarmiento, Daniel Abel Schaad, Francisca Alba‐Sánchez, Zhuo Zheng, Paulo Eduardo de Oliveira
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0038319

Microbial and Chemical Characterization of Underwater Fresh Water Springs in the Dead Sea
Cited by: 136
Author(s): Danny Ionescu, Christian Siebert, Lùbos Polerecký, Yaniv Y. Munwes, Christian Lott, Stefan Häusler, Mina Bižić-Ionescu, Christian Quast, Jörg Peplies, Frank Oliver Glöckner, Alban Ramette, Tino Rödiger, Thorsten Dittmar, Aharon Oren, Stefan Geyer, Hans‐Joachim Stärk, Martin Sauter, Tobias Licha, Jonathan B. Laronne, Dirk de Beer
Software Mentions: 2
Published: almost 14 years ago

10.1038/s41598-019-55719-1

The first global deep-sea stable isotope assessment reveals the unique trophic ecology of Vampire Squid Vampyroteuthis infernalis (Cephalopoda)
Cited by: 19
Author(s): Alexey V. Golikov, Filipe R. Ceia, Rushan M. Sabirov, Jonathan D. Ablett, Ian G. Gleadall, Guðmundur A. Guðmundsson, Henk-Jan T. Hoving, Heather Judkins
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-55270-z

Phylogeographic patterns of intertidal arthropods (Acari, Oribatida) from southern Japanese islands reflect paleoclimatic events
Cited by: 8
Author(s): Tobias Pfingstl, Maximilian Wagner, Shimpei F. Hiruta, Stephan Koblmüller, Wataru Hagino, Satoshi Shimano
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-56269-2

Distribution, Interaction and Functional Profiles of Epiphytic Bacterial Communities from the Rocky Intertidal Seaweeds, South Africa
Cited by: 53
Author(s): Ramganesh Selvarajan, Timothy Sibanda, S. Venkatachalam, Henry Joseph Oduor Ogola, Chinedu Christopher Obieze, Titus A.M. Msagati
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0067280

Genetic Diversity and Population Structure of Tetraploid Wheats (Triticum turgidum L.) Estimated by SSR, DArT and Pedigree Data
Cited by: 118
Author(s): Giovanni Laidò, Giacomo Mangini, Francesca Taranto, Ágata Gadaleta, A. Blanco, Luigi Cattivelli, Daniela Marone, Anna Maria Mastrangelo, Roberto Papa, Pasquale De Vita
Software Mentions: 2
Published: almost 13 years ago

10.3389/fmicb.2017.01686

Pathobiomes Differ between Two Diseases Affecting Reef Building Coralline Algae
Cited by: 10
Author(s): Anne-Leïla Meistertzheim, Maggy M. Nugues, Gaëlle Quéré, Pierre E. Galand
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-59004-4

Genome-wide and SNP network analyses reveal genetic control of spikelet sterility and yield-related traits in wheat
Cited by: 23
Author(s): Ahmad M. Alqudah, Jemanesh K. Haile, Dalia Z. Alomari, Curtis Pozniak, Borislav Kobiljski, Andreas Börner
Software Mentions: 2
Published: over 6 years ago

10.3390/foods9050595

Molecular Characterization and Enological Potential of A High Lactic Acid-Producing Lachancea thermotolerans Vineyard Strain
Cited by: 27
Author(s): Georgios Sgouros, Athanasios Mallouchos, Maria-Evangelia Filippousi, Georgios Banilas, Aspasia Nisiotou
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0200796

Signs of continental ancestry in urban populations of Peru through autosomal STR loci and mitochondrial DNA typing
Cited by: 7
Author(s): Francesco Messina, Tullia Di Corcia, Michele Ragazzo, Cesar Sanchez Mellado, Irene Contini, Patrizia Malaspina, Bianca Maria Ciminelli, Olga Rickards, Carla Jodice
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2019.02523

Culture-Dependent and -Independent Analyses Reveal the Diversity, Structure, and Assembly Mechanism of Benthic Bacterial Community in the Ross Sea, Antarctica
Cited by: 15
Author(s): Anzhang Li, Xiqiu Han, Mingxia Zhang, Zhihui Yang, Meng Chen, Qing Yao, Honghui Zhu
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62499-6

Milk microbial composition of Brazilian dairy cows entering the dry period and genomic comparison between Staphylococcus aureus strains susceptible to the bacteriophage vB_SauM-UFV_DC4
Cited by: 3
Author(s): Vinícius da Silva Duarte, Laura Treu, Cristina Sartori, Roberto Sousa Dias, Isabela da Silva Paes, Marcella Silva Vieira, Gabriele Rocha Santana, Marcos Inácio Marcondes, Alessio Giacomini, Viviana Corich, Stefano Campanaro, Cynthia Cânedo da Silva, Sérgio Oliveira de Paula
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0218838

Spatial distribution of epibionts on olive ridley sea turtles at Playa Ostional, Costa Rica
Cited by: 5
Author(s): Nathan J. Robinson, Emily M. Lazo-Wasem, Brett Oliver Butler, Eric A. Lazo-Wasem, John D. Zardus, Theodora Pinou
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.01849

Reclassification of Paenibacillus riograndensis as a Genomovar of Paenibacillus sonchi: Genome-Based Metrics Improve Bacterial Taxonomic Classification
Cited by: 24
Author(s): Fernando Hayashi Sant’Anna, Adriana Ambrosini, Rocheli de Souza, Gabriela de Carvalho Fernandes, Evelise Bach, Eduardo Balsanelli, Valter A. Baura, Luciana Fernandes de Brito, Volker F. Wendisch, Fábio de Oliveira Pedrosa, Emanuel Maltempi de Souza, Luciane Maria Pereira Passaglia
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0223932

Evaluation of bacterial proliferation with a microfluidic-based device: Antibiochip
Cited by: 0
Author(s): Valentina Gallo, Alessia Ruiba, Massimo Zanin, Paolo Begnamino, S. Ledda, Tiziana Pesce, Giovanni Melioli, M. Pizzi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0243848

Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina
Cited by: 13
Author(s): Mónica Oyuela Aguilar, Alex Gobbi, Patrick Browne, Lea Ellegaard-Jensen, Lars Hestbjerg Hansen, Liliana Semorile, Mariano Pistorio
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0234721

Construction, analysis and validation of co-expression network to understand stress adaptation in Deinococcus radiodurans R1
Cited by: 3
Author(s): Suraj R Joshi, Surabhi Jagtap, Bhakti Basu, Deepti D. Deobagkar, Payel Ghosh
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-66638-x

Successional trajectory of bacterial communities in soil are shaped by plant-driven changes during secondary succession
Cited by: 24
Author(s): M. Rama Krishna, Shruti Gupta, Manuel Delgado‐Baquerizo, Elly Morriën, Satish Chandra Garkoti, Rupesh Chaturvedi, Shandar Ahmad
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0155239

Effects of Dispersal and Initial Diversity on the Composition and Functional Performance of Bacterial Communities
Cited by: 22
Author(s): Yinghua Zha, Mercè Berga, Jérôme Comte, Silke Langenheder
Software Mentions: 2
Published: about 10 years ago

10.1002/ece3.3074

Dampening of population cycles in voles affects small mammal community structure, decreases diversity, and increases prevalence of a zoonotic disease
Cited by: 21
Author(s): Frauke Ecke, David G. Angeler, Магнус Магнуссон, Hussein Khalil, Birger Hörnfeldt
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2015.01168

Seasonal and spatial patterns of microbial diversity along a trophic gradient in the interconnected lakes of the Osterseen Lake District, Bavaria
Cited by: 48
Author(s): Katrin Zwirglmaier, Katharina Keiz, Marion Engel, Juergen Geist, Uta Raeder
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-020-69292-5

Carbon steel corrosion by bacteria from failed seal rings at an offshore facility
Cited by: 32
Author(s): Silvia J. Salgar-Chaparro, Adam Darwin, Anna H. Kaksonen, Laura L. Machuca
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-68448-7

Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment
Cited by: 22
Author(s): Mariana O. Barcoto, Camila Carlos‐Shanley, Huan Fan, Milene Ferro, Nilson S. Nagamoto, Maurício Bacci, Cameron R. Currie, André Rodrigues
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0072627

Microbial Communities of Deep-Sea Methane Seeps at Hikurangi Continental Margin (New Zealand)
Cited by: 68
Author(s): S. Emil Ruff, Julia Arnds, Katrin Knittel, Rudolf Amann, Gunter Wegener, Alban Ramette, Antje Boetius
Software Mentions: 2
Published: over 12 years ago

10.1002/ece3.6504

Hidden diversity in Antarctica: Molecular and morphological evidence of two different species within one of the most conspicuous ascidian species
Cited by: 6
Author(s): Micaela Ruiz, Anabela Taverna, Natalia Servetto, Ricardo Sahade, Christoph Held
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-72679-z

Edaphic factors and plants influence denitrification in soils from a long-term arable experiment
Cited by: 1
Author(s): Ian M. Clark, Qingling Fu, Maïder Abadie, E. R. Dixon, Aimeric Blaud, P. R. Hirsch
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0225369

Normal and altered masticatory load impact on the range of craniofacial shape variation: An analysis of pre-Hispanic and modern populations of the American Southern Cone
Cited by: 12
Author(s): Andrea Eyquem, Susan Kuzminsky, J. Tor Aguilera, Williams Astudillo, Viviana Toro‐Ibacache
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2016.01286

Salicornia strobilacea (Synonym of Halocnemum strobilaceum) Grown under Different Tidal Regimes Selects Rhizosphere Bacteria Capable of Promoting Plant Growth
Cited by: 41
Author(s): Ramona Marasco, Francesca Mapelli, Eleonora Rolli, María J. Mosqueira, Marco Fusi, Paola Bariselli, M. Venkat Ram Reddy, Ameur Chérif, George Tsiamis, Sara Borin, Daniele Daffonchio
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2014.00473

Biogeographic congruency among bacterial communities from terrestrial sulfidic springs
Cited by: 23
Author(s): Brendan Headd, Annette Summers Engel
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2018.00354

Linking the Effect of Antibiotics on Partial-Nitritation Biofilters: Performance, Microbial Communities and Microbial Activities
Cited by: 34
Author(s): Alejandro González‐Martínez, Alejandro Margareto, Alejandro Rodríguez-Sánchez, Chiara Pesciaroli, M. Silvia Díaz˗Cruz, Damià Barceló, Riku Vahala
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-77342-1

Genetic diversity of the Griffon vulture population in Serbia and its importance for conservation efforts in the Balkans
Cited by: 7
Author(s): Slobodan Davidović, Mihailo Jelić, Saša Marinković, Milica Mihajlović, Vanja Tanasić, Irena Hribšek, Goran Sušić, Milan Dragićević, Marina Stamenković‐Radak
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78495-9

Shared volatile organic compounds between camel metabolic products elicits strong Stomoxys calcitrans attraction
Cited by: 4
Author(s): Merid N. Getahun, Peter Ahuya, John Ngiela, Abel Orone, Daniel Masiga, Baldwyn Torto
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.2220

Leaf litter arthropod responses to tropical forest restoration
Cited by: 54
Author(s): Rebecca J. Cole, Karen D. Holl, Rakan A. Zahawi, Philipp Wickey, Alan R. Townsend
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-020-78645-z

Diet and life history reduce interspecific and intraspecific competition among three sympatric Arctic cephalopods
Cited by: 8
Author(s): Alexey V. Golikov, Filipe R. Ceia, Rushan M. Sabirov, G. A. Batalin, Martin E. Blicher, Б. И. Гареев, Guðmundur A. Guðmundsson, Lis Lindahl Jørgensen, Gazinur Mingazov, Denis V. Zakharov, José C. Xavier
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78630-6

DNA metabarcoding of fungal diversity in air and snow of Livingston Island, South Shetland Islands, Antarctica
Cited by: 23
Author(s): Luiz Henrique Rosa, Otávio Henrique Bezerra Pinto, Tina Šantl-Temkiv, Peter Convey, Micheline Carvalho‐Silva, Carlos A. Rosa, Paulo Eduardo Aguiar Saraiva Câmara
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.5040

Different responses of avian feeding guilds to spatial and environmental factors across an elevation gradient in the central Himalaya
Cited by: 21
Author(s): Zhifeng Ding, Jiankun Liang, Yiming Hu, Zhixin Zhou, Sun Hongbin, Lina Liu, Haijun Liu, Huijian Hu, Xingfeng Si
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2018.00851

Rearing Water Treatment Induces Microbial Selection Influencing the Microbiota and Pathogen Associated Transcripts of Cod (Gadus morhua) Larvae
Cited by: 28
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Per Winge, Keshuai Li, Yngvar Ôlsen, Atle M. Bones, Ôlav Vadstein, Ingrid Bakke
Software Mentions: 2
Published: about 8 years ago

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