bioconductor: PAST | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2016.00284

Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure
Cited by: 42
Author(s): Deric R. Learman, Michael W. Henson, J. Cameron Thrash, Ben Temperton, Pamela M. Brannock, Scott R. Santos, Andrew R. Mahon, Kenneth M. Halanych
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0173029

Exploring gastric bacterial community in young pigs
Cited by: 8
Author(s): Vincenzo Motta, Paolo Trevisi, Francesca Bertolini, Anisa Ribani, Giuseppina Schiavo, Luca Fontanesi, Paolo Bosi
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0250731

The abundance and diversity of fruit flies and their parasitoids change with elevation in guava orchards in a tropical Andean forest of Peru, independent of seasonality
Cited by: 5
Author(s): Paolo Salazar-Mendoza, Ivan Peralta-Aragón, Ladislao C. Romero-Rivas, Jordano Salamanca, Cesar Rodriguez‐Saona
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0024750

Changes in N-Transforming Archaea and Bacteria in Soil during the Establishment of Bioenergy Crops
Cited by: 118
Author(s): Yuejian Mao, Anthony C. Yannarell, Roderick I. Mackie
Software Mentions: 3
Published: over 14 years ago

10.1093/aobpla/plaa046

Pollinators drive floral evolution in an Atlantic Forest genus
Cited by: 9
Author(s): Beatriz Neves, Igor Musauer Kessous, Ricardo Loyola de Moura, Dayvid Rodrigues Couto, Camila Martini Zanella, Alexandre Antonelli, Christine D. Bacon, Fabiano Salgueiro, Andrea Costa
Software Mentions: 3
Published: almost 6 years ago

10.1007/s00248-016-0775-z

Nitrate and the Origin of Saliva Influence Composition and Short Chain Fatty Acid Production of Oral Microcosms
Cited by: 50
Author(s): Jessica E. Koopman, Mark J. Buijs, Bernd W. Brandt, Bart J. F. Keijser, Wim Crielaard, Egija Zaura
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0017000

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils
Cited by: 440
Author(s): Heiko Nacke, Andrea Thürmer, Antje Wollherr, Christiane Will, Ladislav Hodač, Nadine Herold, Ingo Schöning, Marion Schrumpf, Rolf Daniel
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pone.0067792

Evolution and Allometry of Calcaneal Elongation in Living and Extinct Primates
Cited by: 53
Author(s): Douglas Boyer, Erik R. Seiffert, Justin T. Gladman, Jonathan I. Bloch
Software Mentions: 3
Published: almost 13 years ago

10.3390/ijms21113870

Time-course Transcriptome of Parageobacillus thermoglucosidasius DSM 6285 Grown in the Presence of Carbon Monoxide and Air
Cited by: 5
Author(s): Habibu Aliyu, Teresa Mohr, Don A. Cowan, Pieter De Maayer, Anke Neumann
Software Mentions: 3
Published: about 6 years ago

10.3390/biology10090827

Plant Resources Utilization among Different Ethnic Groups of Ladakh in Trans-Himalayan Region
Cited by: 20
Author(s): Shiekh Marifatul Haq, Umer Yaqoob, Eduardo Soares Calixto, Inayat Ur Rahman, Abeer Hashem, Maha Abdullah Alakeel, Mohnad Abdalla, Musheerul Hassan, Rainer W. Bussmann, Arshad Mehmood Abbasi, Sami Ur Rahman, Farhana Ijaz
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0226985

What nature separated, and human joined together: About a spontaneous hybridization between two allopatric dogwood species (Cornus controversa and C. alternifolia)
Cited by: 3
Author(s): Barbara Gawrońska, Maria Morozowska, Katarzyna Nuc, Piotr Kosiński, Ryszard Słomski
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms21134634

New Insight into the Composition of Wheat Seed Microbiota
Cited by: 33
Author(s): Agnieszka Kuźniar, Kinga Włodarczyk, Jarosław Grządziel, Małgorzata Woźniak, Karolina Furtak, Anna Gałązka, Ewa Dziadczyk, Ewa Skórzyńska-Polit, Agnieszka Woliñska
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41396-018-0300-0

Legacy of land use history determines reprogramming of plant physiology by soil microbiome
Cited by: 140
Author(s): Yong Li, Alexandre Jousset, Wietse de Boer, Víctor J. Carrión, Taolin Zhang, Xingxiang Wang, Eiko E. Kuramae
Software Mentions: 3
Published: over 7 years ago

10.1128/mSystems.01056-20

Microbiome Aggregated Traits and Assembly Are More Sensitive to Soil Management than Diversity
Cited by: 14
Author(s): Andrew L. Neal, David Hughes, Ian M. Clark, Janet K. Jansson, P. R. Hirsch
Software Mentions: 3
Published: almost 5 years ago

10.1128/mSphereDirect.00211-19

Laryngotracheal Microbiota in Adult Laryngotracheal Stenosis
Cited by: 30
Author(s): Alexander T. Hillel, Sharon Tang, Camila Carlos, Joseph H. Skarlupka, Madhu Gowda, Linda X. Yin, Kevin Motz, Cameron R. Currie, Garret Suen, Susan L. Thibeault
Software Mentions: 3
Published: almost 7 years ago

10.1016/j.soilbio.2019.107613

Calcium exerts a strong influence upon phosphohydrolase gene abundance and phylogenetic diversity in soil
Cited by: 13
Author(s): Andrew L. Neal, M. J. Glendining
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0235312

Who’s afraid of the big bad boar? Assessing the effect of wild boar presence on the occurrence and activity patterns of other mammals
Cited by: 6
Author(s): Êmila Silveira de Oliveira, Manoel Ludwig da Fontoura Rodrigues, Magnus Machado Severo, Tiágo Gomes dos Santos, Carlos Benhur Kasper
Software Mentions: 3
Published: almost 6 years ago

10.1155/2018/2837328

Illumina MiSeq Sequencing for Preliminary Analysis of Microbiome Causing Primary Endodontic Infections in Egypt
Cited by: 15
Author(s): Sally Ali Tawfik, Marwa Azab, Ali Abdellah Abdelrahman Ahmed, Dalia Mukhtar Fayyad
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-33634-1

Diversity and characteristics of colonization of root-associated fungi of Vaccinium uliginosum
Cited by: 24
Author(s): Hongyi Yang, Xingyu Zhao, Changli Liu, Long Bai, Min Zhao, Lili Li
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-33007-8

Local confinement of disease-related microbiome facilitates recovery of gorgonian sea fans from necrotic-patch disease
Cited by: 14
Author(s): Elena Quintanilla, Catalina Ramírez‐Portilla, Boahemaa Adu-Oppong, Gretchen Walljasper, Stefanie P. Glaeser, Thomas Wilke, Alejandro Reyes, Juan A. Sánchez
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0039752

Convergence and Divergence in the Evolution of Cat Skulls: Temporal and Spatial Patterns of Morphological Diversity
Cited by: 54
Author(s): Manabu Sakamoto, Marcello Ruta
Software Mentions: 3
Published: almost 14 years ago

10.1038/s41598-018-26713-w

Effect of different types of olive oil pomace dietary supplementation on the rumen microbial community profile in Comisana ewes
Cited by: 41
Author(s): Federica Mannelli, Alice Cappucci, Francesco Pini, Roberta Pastorelli, Francesca Decorosi, Luciana Giovannetti, Marcello Mele, Sara Minieri, Giuseppe Conte, Mariano Pauselli, Stefano Rapaccini, Carlo Viti, Arianna Buccioni
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-27705-6

Need for focus on microbial species following ice melt and changing freshwater regimes in a Janus Arctic Gateway
Cited by: 17
Author(s): Nathalie Joli, Michel Gosselin, Mathieu Ardyna, Marcel Babin, Deo Florence L. Onda, Jean‐Éric Tremblay, Connie Lovejoy
Software Mentions: 3
Published: almost 8 years ago

10.3390/ani9090599

Effects of Land Transport Stress on Variations in Ruminal Microbe Diversity and Immune Functions in Different Breeds of Cattle
Cited by: 20
Author(s): Fengpeng Li, Ali Mujtaba Shah, Zhisheng Wang, Quanhui Peng, Rui Hu, Huawei Zou, Cui Tan, Xiangfei Zhang, Yupeng Liao, Yongjie Wang, Xueying Wang, Lingping Zeng, Bai Xue, Lizhi Wang
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-29307-8

Mineralogical and textural characteristics of nest building geomaterials used by three sympatric mud-nesting hirundine species
Cited by: 9
Author(s): Dimitrios Papoulis, Olga Tzortzakaki, Pavlos Avramidis, Panagiotis Mentis, Paraskevi Lampropoulou, George Iliopoulos
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-019-38993-x

Regime shift in fish assemblage structure in the Yangtze River following construction of the Three Gorges Dam
Cited by: 24
Author(s): Xin Gao, Masami Fujiwara, Kirk O. Winemiller, Pengcheng Lin, Mingzheng Li, Huanzhang Liu
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0032093

Spatial Scales of Bacterial Diversity in Cold-Water Coral Reef Ecosystems
Cited by: 39
Author(s): Sandra Schöttner, Christian Wild, Friederike Hoffmann, Antje Boetius, Alban Ramette
Software Mentions: 3
Published: about 14 years ago

10.1093/gigascience/giy073

Arabidopsis phenotyping through geometric morphometrics
Cited by: 19
Author(s): Carlos Augusto Manacorda, Sebastián Asurmendi
Software Mentions: 3
Published: almost 8 years ago

10.1038/srep35507

Historical dimensions of population structure in a continuously distributed marine species: The case of the endemic Chilean dolphin
Cited by: 8
Author(s): María José Pérez‐Álvarez, Carlos Olavarría, Rodrigo Moraga, C. Scott Baker, Rebecca M. Hamner, Élie Poulin
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0212120

Molecular fungal community and its decomposition activity in sapwood and heartwood of 13 temperate European tree species
Cited by: 51
Author(s): Sabrina Leonhardt, Björn Hoppe, Elisa Stengel, Lisa Noll, Julia Moll, Claus Bässler, Andreas Dahl, François Buscot, Martin Hofrichter, Harald Kellner
Software Mentions: 3
Published: over 7 years ago

10.3390/genes10010042

Stress-Tolerant Yeasts: Opportunistic Pathogenicity Versus Biocontrol Potential
Cited by: 52
Author(s): Janja Zajc, Cene Gostinčar, Anja Černoša, Nina Gunde‐Cimerman
Software Mentions: 3
Published: over 7 years ago

10.3390/genes12040545

A Complex Gene Network Mediated by Ethylene Signal Transduction TFs Defines the Flower Induction and Differentiation in Olea europaea L.
Cited by: 2
Author(s): Amelia Salimonti, Ivano Forgione, Tiziana Maria Sirangelo, Guglielmo Puccio, Antonio Mauceri, Francesco Mercati, Francesco Sunseri, Fabrizio Carbone
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pntd.0008932

Genetic diversity of Trypanosoma cruzi parasites infecting dogs in southern Louisiana sheds light on parasite transmission cycles and serological diagnostic performance
Cited by: 13
Author(s): Eric Dumonteil, Ardem Elmayan, Alicia Majeau, Weihong Tu, Brandy Duhon, Preston A. Marx, Wendy Wolfson, Garry Balsamo, Claudia Herrera
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.634960

Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla
Cited by: 3
Author(s): Witoon Purahong, Shakhawat Hossen, Ali Nawaz, Dolaya Sadubsarn, Benjawan Tanunchai, Sven Dommert, Matthias Noll, La‐aw Ampornpan, Petcharat Werukamkul, Tesfaye Wubet
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2019.00726

Negligible Impact of Perinatal Tulathromycin Metaphylaxis on the Developmental Dynamics of Fecal Microbiota and Their Accompanying Antimicrobial Resistome in Piglets
Cited by: 12
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brandi Burton, Brian Aldridge, James Lowe
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2020.571400

Exploring the Influence of Signal Molecules on Marine Biofilms Development
Cited by: 14
Author(s): Ruojun Wang, Wei Ding, Lexin Long, Yi Lan, Haoya Tong, Subhasish Saha, Yue Him Wong, Jin Sun, Yong-Xin Li, Weipeng Zhang, Pei‐Yuan Qian
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2021.623070

Insular Pharmacopoeias: Ethnobotanical Characteristics of Medicinal Plants Used on the Adriatic Islands
Cited by: 14
Author(s): Łukasz Łuczaj, Marija Jug-Dujaković, Katija Dolina, Mirjana Jeričević, Ivana Vitasović‐Kosić
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-15624-x

Influences of anthropogenic land use on microbial community structure and functional potentials of stream benthic biofilms
Cited by: 31
Author(s): Xiaodong Qu, Ze Ren, Haiping Zhang, Min Zhang, Yuhang Zhang, Xiaobo Liu, Wenqi Peng
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2017.02319

Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams
Cited by: 50
Author(s): Ze Ren, Fang Wang, Xiaodong Qu, James J. Elser, Yang Liu, Limin Chu
Software Mentions: 3
Published: over 8 years ago

10.1111/tpj.12600

The low‐recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression
Cited by: 31
Author(s): Katie Baker, Micha Bayer, Nicola Cook, Steven Dreißig, Taniya Dhillon, Joanne Russell, Pete E. Hedley, Jenny Morris, Luke Ramsay, Isabelle Colas, Robbie Waugh, Brian J. Steffenson, Iain Milne, Gordon Stephen, David Marshall, Andrew J. Flavell
Software Mentions: 3
Published: almost 12 years ago

10.3389/fmicb.2017.00715

Relative Abundance and Diversity of Bacterial Methanotrophs at the Oxic–Anoxic Interface of the Congo Deep-Sea Fan
Cited by: 11
Author(s): Sandrine Bessette, Yann Moalic, Sébastien Gautey, Françoise Lesongeur, Anne Godfroy, Laurent Toffin
Software Mentions: 3
Published: about 9 years ago

10.3390/plants10010104

CRISPR/Cas9-Mediated Knockout of HOS1 Reveals Its Role in the Regulation of Secondary Metabolism in Arabidopsis thaliana
Cited by: 14
Author(s): Yuri N. Shkryl, Yulia A. Yugay, Т.В. Авраменко, Valeria P. Grigorchuk, Tatiana Y. Gorpenchenko, Olga Grischenko, Victor P. Bulgakov
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.00837

Differential Impacts of Willow and Mineral Fertilizer on Bacterial Communities and Biodegradation in Diesel Fuel Oil-Contaminated Soil
Cited by: 22
Author(s): Mary-Cathrine Leewis, Ondřej Uhlík, Serena Fraraccio, Kelly M. McFarlin, Anastasia Kottara, Catherine Glover, Tomáš Macek, Mary Beth Leigh
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2020.00285

The Distribution of Bathyarchaeota in Surface Sediments of the Pearl River Estuary Along Salinity Gradient
Cited by: 27
Author(s): Dayu Zou, Jie Pan, Zongbao Liu, Chuanlun Zhang, Hongbin Liu, Meng Li
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.3511

The identification of Oligo-Miocene mammalian palaeocommunities from the Riversleigh World Heritage Area, Australia and an appraisal of palaeoecological techniques
Cited by: 8
Author(s): Troy Myers, Karen H. Black, Michael Archer, Suzanne J. Hand
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2018.00002

Transcriptome Analysis of a Bloom-Forming Cyanobacterium Microcystis aeruginosa during Ma-LMM01 Phage Infection
Cited by: 25
Author(s): Daichi Morimoto, Shigeko Kimura, Yoshihiko Sako, Takashi Yoshida
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2018.01664

Microbial Community Changes in a Chlorinated Solvents Polluted Aquifer Over the Field Scale Treatment With Poly-3-Hydroxybutyrate as Amendment
Cited by: 26
Author(s): Bruna Matturro, Lucia Pierro, Emanuela Frascadore, Marco Petrangeli Papini, Simona Rossetti
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.8571

Gynodioecy in the common spindle tree (Euonymus europaeusL.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowers
Cited by: 3
Author(s): Jiří Neustupa
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-020-3497-7

A novel investigation of the effect of iterations in sliding semi-landmarks for 3D human facial images
Cited by: 1
Author(s): Azree Nazri, Olalekan Agbolade, Razali Yaakob, Abdul Ghani, Yoke Kqueen Cheah
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2019.00594

High-Throughput Illumina MiSeq Amplicon Sequencing of Yeast Communities Associated With Indigenous Dairy Products From Republics of Benin and Niger
Cited by: 14
Author(s): Philippe Sessou, Santosh Keisam, Ngangyola Tuikhar, Mariama Gagara, Souaïbou Farougou, Kumaraswamy Jeyaram
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2018.00076

Fungal Genetics and Functional Diversity of Microbial Communities in the Soil under Long-Term Monoculture of Maize Using Different Cultivation Techniques
Cited by: 29
Author(s): Anna Gałązka, Jarosław Grządziel
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2019.01666

Compositional Shifts of Bacterial Communities Associated With Pyropia yezoensis and Surrounding Seawater Co-occurring With Red Rot Disease
Cited by: 14
Author(s): Yonggang Yan, Huichao Yang, Lei Tang, Jie Li, Yunxiang Mao, Zhaolan Mo
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2016.00440

Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific
Cited by: 113
Author(s): Catarina Cúcio, Aschwin H. Engelen, Rodrigo Costa, Gerard Muyzer
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2019.02907

A New High Throughput Sequencing Assay for Characterizing the Diversity of Natural Vibrio Communities and Its Application to a Pacific Oyster Mortality Event
Cited by: 22
Author(s): William L. King, Nachshon Siboni, Tim Kahlke, Timothy Green, Maurizio Labbate, Justin R. Seymour
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.02271

Distinct Successions of Common and Rare Bacteria in Soil Under Humic Acid Amendment – A Microcosm Study
Cited by: 30
Author(s): Pengfa Li, Jia Liu, Chunyu Jiang, Meng Wu, Ming Liu, Zhongpei Li
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2018.01251

Gut Bacterial Communities of Dendroctonus valens and Monoterpenes and Carbohydrates of Pinus tabuliformis at Different Attack Densities to Host Pines
Cited by: 7
Author(s): Dandan Xu, Letian Xu, Fangyuan Zhou, Bo Wang, Shanshan Wang, Min Lü, Jianghua Sun
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2019.00908

Bacterioplankton Community Composition Along Environmental Gradients in Lakes From Byers Peninsula (Maritime Antarctica) as Determined by Next-Generation Sequencing
Cited by: 25
Author(s): Antonio Picazo, Carlos Rochera, Juan Antonio Villaescusa, Javier Miralles‐Lorenzo, David Velázquez, Antonio Quesada, Antonio Camacho
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2013.00253

Plant soil interactions alter carbon cycling in an upland grassland soil
Cited by: 22
Author(s): Bruce C. Thomson, Nicholas J. Ostle, Niall P. McNamara, Simon Oakley, Andrew S. Whiteley, Mark Bailey, Robert I. Griffiths
Software Mentions: 3
Published: over 13 years ago

10.1186/s12859-014-0361-7

Tools for T-RFLP data analysis using Excel
Cited by: 15
Author(s): Nils Johan Fredriksson, Malte Hermansson, Britt‐Marie Wilén
Software Mentions: 3
Published: over 11 years ago

10.3389/fmicb.2015.01297

Particle-Associated Differ from Free-Living Bacteria in Surface Waters of the Baltic Sea
Cited by: 132
Author(s): Angelika Rieck, Daniel P. R. Herlemann, Klaus Jürgens, Hans‐Peter Grossart
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj.7970

Reconstructing the archosaur radiation using a Middle Triassic archosauriform tooth assemblage from Tanzania
Cited by: 7
Author(s): Devin K. Hoffman, Hunter R. Edwards, Paul M. Barrett, Sterling J. Nesbitt
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2021.629169

Targeting the Active Rhizosphere Microbiome of Trifolium pratense in Grassland Evidences a Stronger-Than-Expected Belowground Biodiversity-Ecosystem Functioning Link
Cited by: 15
Author(s): Sara Fareed Mohamed Wahdan, Anna Heintz‐Buschart, Chakriya Sansupa, Benjawan Tanunchai, Yuting Wu, Martin Schädler, Matthias Noll, Witoon Purahong, François Buscot
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.00462

Carrageenan Gum and Adherent Invasive Escherichia coli in a Piglet Model of Inflammatory Bowel Disease: Impact on Intestinal Mucosa-associated Microbiota
Cited by: 41
Author(s): Peris M. Munyaka, Shadi Sepehri, Jean–Eric Ghia, Ehsan Khafipour
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2018.02120

Determinants of Deadwood-Inhabiting Fungal Communities in Temperate Forests: Molecular Evidence From a Large Scale Deadwood Decomposition Experiment
Cited by: 39
Author(s): Witoon Purahong, Tesfaye Wubet, Guillaume Lentendu, Björn Hoppe, Katalee Jariyavidyanont, Tobias Arnstadt, Kristin Baber, Peter Otto, Harald Kellner, Martin Hofrichter, Jürgen Bauhus, Wolfgang W. Weisser, Dirk Krüger, Ernst Detlef Schulze, Tiemo Kahl, François Buscot
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.1589

Cranial ontogenetic variation in early saurischians and the role of heterochrony in the diversification of predatory dinosaurs
Cited by: 40
Author(s): Christian Foth, Brandon P Hedrick, Martín D. Ezcurra
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj.5974

Genetic and phenotypic differentiation of lumpfish (Cyclopterus lumpus) across the North Atlantic: implications for conservation and aquaculture
Cited by: 23
Author(s): Benjamin Alexander Whittaker, Sofía Consuegra, Carlos García de Leániz
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.1702

Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice
Cited by: 34
Author(s): José F. García-Mazcorro, Ivan Ivanov, David A. Mills, Giuliana Noratto
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2015.01300

Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest Ecosystems
Cited by: 117
Author(s): Kezia Goldmann, Ingo Schöning, François Buscot, Tesfaye Wubet
Software Mentions: 3
Published: over 10 years ago

10.1007/s00027-019-0643-2

Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient
Cited by: 14
Author(s): Anna Waibel, Hannes Peter, Rubén Sommaruga
Software Mentions: 3
Published: about 7 years ago

10.7717/peerj.4174

Is there a link between aging and microbiome diversity in exceptional mammalian longevity?
Cited by: 26
Author(s): Graham M. Hughes, John Leech, Sébastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2180-12-122

Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system
Cited by: 82
Author(s): Vicente Gomez-Alvarez, Randy P. Revetta, Jorge W. Santo Domingo
Software Mentions: 3
Published: almost 14 years ago

10.7717/peerj-cs.249

Landmark-based homologous multi-point warping approach to 3D facial recognition using multiple datasets
Cited by: 4
Author(s): Olalekan Agbolade, Azree Nazri, Razali Yaakob, Abdul Ghani, Yoke Kqueen Cheah
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2016.00426

The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis
Cited by: 42
Author(s): Hooman Derakhshani, Jeroen De Buck, Rienske A.R. Mortier, Herman W. Barkema, Denis O. Krause, Ehsan Khafipour
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2018.00578

Benthic Algal Community Structures and Their Response to Geographic Distance and Environmental Variables in the Qinghai-Tibetan Lakes With Different Salinity
Cited by: 23
Author(s): Jian Yang, Hongchen Jiang, Wen Liu, Beichen Wang
Software Mentions: 3
Published: about 8 years ago

10.1186/1756-3305-6-228

The compositional landscape of minicircle sequences isolated from active lesions and scars of American cutaneous leishmaniasis
Cited by: 5
Author(s): Eduardo Henrique Gomes Rodrigues, Fábia Carla da Silva Soares, Roberto P. Werkhäuser, Maria Edileuza Felinto de Brito, Octávio Fernandes, Frederico G. C. Abath, Adeílton Brandão
Software Mentions: 3
Published: almost 13 years ago

10.1002/ece3.1555

Size matters: nest colonization patterns for twig‐nesting ants
Cited by: 31
Author(s): Estelí Jiménez‐Soto, Stacy M. Philpott
Software Mentions: 3
Published: almost 11 years ago

10.1002/ece3.4105

Strong associations between plant genotypes and bacterial communities in a natural salt marsh
Cited by: 24
Author(s): Gregory P. Zogg, Steven E. Travis, Daniel A. Brazeau
Software Mentions: 3
Published: about 8 years ago

10.1002/ece3.4859

Physical, but not chemical, antiherbivore defense expression is related to the clustered spatial distribution of tropical trees in an Amazonian forest
Cited by: 7
Author(s): Johanna Cobo-Quinche, María‐José Endara, Renato Valencia, Dolly Muñoz-Upegui, Rafael E. Cárdenas
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2018.00364

Substrate Shift Reveals Roles for Members of Bacterial Consortia in Degradation of Plant Cell Wall Polymers
Cited by: 27
Author(s): Camila Carlos, Huan Fan, Cameron R. Currie
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.5024

Availability of food resources and habitat structure shape the individual‐resource network of a Neotropical marsupial
Cited by: 15
Author(s): Nícholas F. de Camargo, Hernani Oliveira, Juliana Fernandes Ribeiro, A. J. A. de Camargo, Emerson M. Vieira
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.4678

Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coral Acropora cervicornis
Cited by: 35
Author(s): Javier Rodríguez-Casariego, Mark C. Ladd, Andrew A. Shantz, Christian Lopes, Manjinder S. Cheema, Bohyun Kim, Steven B. Roberts, James W. Fourqurean, Juan Ausió, Deron E. Burkepile, José M. Eirín‐López
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.5656

To remain or leave: Dispersal variation and its genetic consequences in benthic freshwater invertebrates
Cited by: 2
Author(s): Paolo Ruggeri, Ellen Pasternak, Beth Okamura
Software Mentions: 3
Published: over 6 years ago

10.1186/s42523-021-00077-5

Ceftiofur reduced Fusobacterium leading to uterine microbiota alteration in dairy cows with metritis
Cited by: 9
Author(s): Seong-Jeub Jeon, Federico Cunha, R. Daetz, R.C. Bicalho, Svetlana Lima, Klibs N. Galvão
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2017.02511

Succession of Bacterial Communities in a Seasonally Stratified Lake with an Anoxic and Sulfidic Hypolimnion
Cited by: 42
Author(s): Muhe Diao, Ruben Sinnige, Karsten Kalbitz, Jef Huisman, Gerard Muyzer
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.8075

High genetic and epigenetic variation of transposable elements: Potential drivers to rapid adaptive evolution for the noxious invasive weed Mikania micrantha
Cited by: 5
Author(s): Yingjuan Su, Qiqi Huang, Zhen Wang, Ting Wang
Software Mentions: 3
Published: over 4 years ago

10.1128/AEM.02885-19

Nutrient Level Determines Biofilm Characteristics and Subsequent Impact on Microbial Corrosion and Biocide Effectiveness
Cited by: 48
Author(s): Silvia J. Salgar-Chaparro, Kateřina Lepková, Thunyaluk Pojtanabuntoeng, Adam Darwin, Laura L. Machuca
Software Mentions: 3
Published: about 6 years ago

10.1002/ece3.908

Expanding the understanding of local community assembly in adaptive radiations
Cited by: 5
Author(s): Katharina C. Wollenberg, Michael Veith, Stefan Lötters
Software Mentions: 3
Published: over 12 years ago

10.1186/s12864-017-3606-9

The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
Cited by: 268
Author(s): Ignazio Verde, Jerry Jenkins, Luca Dondini, Simona Micali, Giulia Pagliarani, Elisa Vendramin, Roberta Paris, Valeria Aramini, Laura Gazza, Laura Rossini, D. Bassi, Michela Troggio, Shengqiang Shu, Jane Grimwood, Stefano Tartarini, Maria Teresa Dettori, Jeremy Schmutz
Software Mentions: 3
Published: about 9 years ago

10.1002/ece3.5713

Rapid redistribution of agricultural land alters avian richness, abundance, and functional diversity
Cited by: 6
Author(s): Stephen Pringle, Ngoni Chiweshe, Peter Steward, Peter J. Mundy, Martin Dallimer
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.646

Environmental effects on molecular and phenotypic variation in populations ofEruca sativaacross a steep climatic gradient
Cited by: 31
Author(s): Erik Westberg, Shachar Ohali, Anatoly Shevelevich, Pinchas Fine, Oz Barazani
Software Mentions: 3
Published: almost 13 years ago

10.3390/microorganisms9010075

On-Site Blackwater Treatment Fosters Microbial Groups and Functions to Efficiently and Robustly Recover Carbon and Nutrients
Cited by: 3
Author(s): Eiko E. Kuramae, Maurício R. Dimitrov, Gustavo H. R. da Silva, Adriano Reis Lucheta, Lucas William Mendes, Ronildson Lima Luz, Louise E. M. Vet, Tânia V. Fernandes
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.6361

Modularity and heterochrony in the evolution of the ceratopsian dinosaur frill
Cited by: 9
Author(s): Albert Prieto‐Márquez, Joan García-Porta, Shantanu H. Joshi, Mark A. Norell, Peter J. Makovicky
Software Mentions: 3
Published: about 6 years ago

10.1128/AEM.02189-20

Dichotomy between Regulation of Coral Bacterial Communities and Calcification Physiology under Ocean Acidification Conditions
Cited by: 8
Author(s): Amanda Shore, Rusty D. Day, Joseph Stewart, Colleen A. Burge
Software Mentions: 3
Published: over 5 years ago

10.3390/cells9122700

Differentially Expressed Genes Shared by Two Distinct Cytoplasmic Male Sterility (CMS) Types of Silene vulgaris Suggest the Importance of Oxidative Stress in Pollen Abortion
Cited by: 6
Author(s): Manuela Krüger, Oushadee A. J. Abeyawardana, Claudia Krüger, Miloslav Juříček, Helena Štorchová
Software Mentions: 3
Published: over 5 years ago

10.1007/s00248-016-0748-2

Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?
Cited by: 254
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 3
Published: about 10 years ago

10.1007/s00248-020-01565-y

Canopy Position Has a Stronger Effect than Tree Species Identity on Phyllosphere Bacterial Diversity in a Floodplain Hardwood Forest
Cited by: 12
Author(s): Martina Herrmann, Patricia Geesink, Ronny Richter, Kirsten Küsel
Software Mentions: 3
Published: almost 6 years ago

10.1007/s00248-020-01543-4

Unveiling the Microbiota Diversity of the Xerophyte Argania spinosa L. Skeels Root System and Residuesphere
Cited by: 6
Author(s): Francesca Mapelli, Valentina Riva, Lorenzo Vergani, Redouane Choukr‐Allah, Sara Borin
Software Mentions: 3
Published: almost 6 years ago

10.3390/cells8060623

Functionally Significant Features in the 5′ Untranslated Region of the ABCA1 Gene and Their Comparison in Vertebrates
Cited by: 10
Author(s): Pavel Dvořák, Sarah Leupen, Pavel Souček
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0248806

Soil bacterial communities and their associated functions for forest restoration on a limestone mine in northern Thailand
Cited by: 11
Author(s): Chakriya Sansupa, Witoon Purahong, Tesfaye Wubet, Pimonrat Tiansawat, Wasu Pathom-aree, Neung Teaumroong, Panuwan Chantawannakul, François Buscot, Stephen Elliott, Terd Disayathanoowat
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0218257

Microbiota data from low biomass milk samples is markedly affected by laboratory and reagent contamination
Cited by: 35
Author(s): Josef Dahlberg, Li Sun, Karin Persson Waller, K. Östensson, Mark A. McGuire, Sigrid Agenäs, Johan Dicksved
Software Mentions: 3
Published: almost 7 years ago

Projects: bioconductor: PAST

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning PAST 2,336