Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: PAST

https://packages.ecosyste.ms/registries/bioconductor.org/packages/PAST

Pathway Association Study Tool (PAST)
1 version
Latest release: about 1 year ago
4,613 downloads total

Papers Mentioning PAST 2,336

10.1038/srep12872
Geochemical influences and mercury methylation of a dental wastewater microbiome
Cited by: 17
Author(s): Asha Rani, Karl J. Rockne, James L. Drummond, Muntasar Al-Hinai, Ravi Ranjan
Software Mentions: 3
Published: over 9 years ago
10.1038/srep12179
Resilience and receptivity worked in tandem to sustain a geothermal mat community amidst erratic environmental conditions
Cited by: 18
Author(s): Wriddhiman Ghosh, Chayan Roy, Ranjit Roy, Pravin Nilawe, Amartya Mukherjee, Prabir Kumar Haldar, Neeraj Chauhan, Sabyasachi Bhattacharya, Atima Agarwal, Ashish George, Prosenjit Pyne, Sanjay K. Mandal, Moidu Jameela Rameez, Goutam Bala
Software Mentions: 3
Published: over 9 years ago
10.1038/srep16350
Sample storage conditions significantly influence faecal microbiome profiles
Cited by: 329
Author(s): Jocelyn M. Choo, Lex E. X. Leong, Geraint B. Rogers
Software Mentions: 3
Published: about 9 years ago
10.1038/s41598-019-49097-x
Divergent selection and genetic structure of Sideritis scardica populations from southern Balkan Peninsula as revealed by AFLP fingerprinting
Cited by: 16
Author(s): Martina Grdiša, Ivan Radosavljević, Zlatko Liber, Gjoshe Stefkov, Parthenopi Ralli, Paschalina Chatzopoulou, Klaudija Carović‐Stanko, Zlatko Šatović
Software Mentions: 3
Published: about 5 years ago
10.7717/peerj.1702
Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice
Cited by: 34
Author(s): José F. García-Mazcorro, Ivan Ivanov, David A. Mills, Giuliana Noratto
Software Mentions: 3
Published: almost 9 years ago
10.7717/peerj.3511
The identification of Oligo-Miocene mammalian palaeocommunities from the Riversleigh World Heritage Area, Australia and an appraisal of palaeoecological techniques
Cited by: 8
Author(s): Troy Myers, Karen H. Black, Michael Archer, Suzanne J. Hand
Software Mentions: 3
Published: over 7 years ago
10.1098/rsos.170899
Still slow, but even steadier: an update on the evolution of turtle cranial disparity interpolating shapes along branches
Cited by: 8
Author(s): Christian Foth, Eduardo Ascarrunz, Walter G. Joyce
Software Mentions: 3
Published: about 7 years ago
10.1098/rspb.2013.1865
The radiation of cynodonts and the ground plan of mammalian morphological diversity
Cited by: 90
Author(s): Marcello Ruta, Jennifer Botha‐Brink, Stephen Α. Mitchell, Michael J. Benton
Software Mentions: 3
Published: about 11 years ago
10.1093/gigascience/giy073
Arabidopsis phenotyping through geometric morphometrics
Cited by: 19
Author(s): Carlos Augusto Manacorda, Sebastián Asurmendi
Software Mentions: 3
Published: over 6 years ago
10.1098/rspb.2014.2114
Cranial biomechanics underpins high sauropod diversity in resource-poor environments
Cited by: 57
Author(s): David Button, Emily J. Rayfield, Paul M. Barrett
Software Mentions: 3
Published: almost 10 years ago
10.1098/rsos.181317
Mechanical significance of morphological variation in diprotodont incisors
Cited by: 3
Author(s): Philip James Rencher Morris, Philip G. Cox, Samuel N. Cobb
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-50624-z
Diversity, Co-occurrence and Implications of Fungal Communities in Wastewater Treatment Plants
Cited by: 66
Author(s): Hailemariam Abrha Assress, Ramganesh Selvarajan, Hlengilizwe Nyoni, Khayalethu Ntushelo, Bhekie B. Mamba, Titus A.M. Msagati
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-021-87162-6
Limnological response from high-altitude wetlands to the water supply in the Andean Altiplano
Cited by: 2
Author(s): Ignacio García-Sanz, Inger Heine-Fuster, José A. Luque, H. Pizarro, Rodrigo Castillo, Matías Pailahual, Manuel Prieto, Pablo Pérez-Portilla, Adriana Aránguiz-Acuña
Software Mentions: 3
Published: over 3 years ago
10.1128/MRA.00757-19
The Bacterial Community in the Western Region of North Pacific Intermediate Water
Cited by: 0
Author(s): Maki Teramoto, Ayumi Komatsu, Kouhei Ohnishi
Software Mentions: 3
Published: over 5 years ago
10.3389/fpls.2021.634960
Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla
Cited by: 3
Author(s): Witoon Purahong, Shakhawat Hossen, Ali Nawaz, Dolaya Sadubsarn, Benjawan Tanunchai, Sven Dommert, Matthias Noll, La‐aw Ampornpan, Petcharat Werukamkul, Tesfaye Wubet
Software Mentions: 3
Published: over 3 years ago
10.3389/fphar.2021.623070
Insular Pharmacopoeias: Ethnobotanical Characteristics of Medicinal Plants Used on the Adriatic Islands
Cited by: 14
Author(s): Łukasz Łuczaj, Marija Jug-Dujaković, Katija Dolina, Mirjana Jeričević, Ivana Vitasović‐Kosić
Software Mentions: 3
Published: over 3 years ago
10.1186/s12859-014-0361-7
Tools for T-RFLP data analysis using Excel
Cited by: 15
Author(s): Nils Johan Fredriksson, Malte Hermansson, Britt‐Marie Wilén
Software Mentions: 3
Published: about 10 years ago
10.7717/peerj.7970
Reconstructing the archosaur radiation using a Middle Triassic archosauriform tooth assemblage from Tanzania
Cited by: 7
Author(s): Devin K. Hoffman, Hunter R. Edwards, Paul M. Barrett, Sterling J. Nesbitt
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2019.00726
Negligible Impact of Perinatal Tulathromycin Metaphylaxis on the Developmental Dynamics of Fecal Microbiota and Their Accompanying Antimicrobial Resistome in Piglets
Cited by: 12
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brandi Burton, Brian Aldridge, James Lowe
Software Mentions: 3
Published: over 5 years ago
10.3390/genes10010042
Stress-Tolerant Yeasts: Opportunistic Pathogenicity Versus Biocontrol Potential
Cited by: 52
Author(s): Janja Zajc, Cene Gostinčar, Anja Černoša, Nina Gunde‐Cimerman
Software Mentions: 3
Published: almost 6 years ago
10.3389/fmicb.2019.01666
Compositional Shifts of Bacterial Communities Associated With Pyropia yezoensis and Surrounding Seawater Co-occurring With Red Rot Disease
Cited by: 14
Author(s): Yonggang Yan, Huichao Yang, Lei Tang, Jie Li, Yunxiang Mao, Zhaolan Mo
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.1589
Cranial ontogenetic variation in early saurischians and the role of heterochrony in the diversification of predatory dinosaurs
Cited by: 40
Author(s): Christian Foth, Brandon P Hedrick, Martín D. Ezcurra
Software Mentions: 3
Published: almost 9 years ago
10.1007/s00027-019-0643-2
Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient
Cited by: 14
Author(s): Anna Waibel, Hannes Peter, Rubén Sommaruga
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.4174
Is there a link between aging and microbiome diversity in exceptional mammalian longevity?
Cited by: 26
Author(s): Graham M. Hughes, John Leech, Sébastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling
Software Mentions: 3
Published: almost 7 years ago
10.1186/1471-2180-12-122
Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system
Cited by: 82
Author(s): Vicente Gomez-Alvarez, Randy P. Revetta, Jorge W. Santo Domingo
Software Mentions: 3
Published: over 12 years ago
10.3389/fmicb.2020.571400
Exploring the Influence of Signal Molecules on Marine Biofilms Development
Cited by: 14
Author(s): Ruojun Wang, Wei Ding, Lexin Long, Yi Lan, Haoya Tong, Subhasish Saha, Yue Him Wong, Jin Sun, Yong-Xin Li, Weipeng Zhang, Pei‐Yuan Qian
Software Mentions: 3
Published: about 4 years ago
10.3389/fmicb.2016.00837
Differential Impacts of Willow and Mineral Fertilizer on Bacterial Communities and Biodegradation in Diesel Fuel Oil-Contaminated Soil
Cited by: 22
Author(s): Mary-Cathrine Leewis, Ondřej Uhlík, Serena Fraraccio, Kelly M. McFarlin, Anastasia Kottara, Catherine Glover, Tomáš Macek, Mary Beth Leigh
Software Mentions: 3
Published: over 8 years ago
10.1186/1756-3305-6-228
The compositional landscape of minicircle sequences isolated from active lesions and scars of American cutaneous leishmaniasis
Cited by: 5
Author(s): Eduardo Henrique Gomes Rodrigues, Fábia Carla da Silva Soares, Roberto P. Werkhäuser, Maria Edileuza Felinto de Brito, Octávio Fernandes, Frederico G. C. Abath, Adeílton Brandão
Software Mentions: 3
Published: over 11 years ago
10.3389/fmicb.2016.00284
Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure
Cited by: 42
Author(s): Deric R. Learman, Michael W. Henson, J. Cameron Thrash, Ben Temperton, Pamela M. Brannock, Scott R. Santos, Andrew R. Mahon, Kenneth M. Halanych
Software Mentions: 3
Published: over 8 years ago
10.3389/fmicb.2021.593023
Rhizodegradation of Pyrene by a Non-pathogenic Klebsiella pneumoniae Isolate Applied With Tagetes erecta L. and Changes in the Rhizobacterial Community
Cited by: 11
Author(s): Jina Rajkumari, Yashmin Choudhury, Kasturi Bhattacharjee, Piyush Pandey
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2018.00364
Substrate Shift Reveals Roles for Members of Bacterial Consortia in Degradation of Plant Cell Wall Polymers
Cited by: 27
Author(s): Camila Carlos, Huan Fan, Cameron R. Currie
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2017.00431
Reactivation of Deep Subsurface Microbial Community in Response to Methane or Methanol Amendment
Cited by: 22
Author(s): Pauliina Rajala, Malin Bomberg
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2015.00674
Functional gene pyrosequencing reveals core proteobacterial denitrifiers in boreal lakes
Cited by: 45
Author(s): Jatta Saarenheimo, Marja Tiirola, Antti J. Rissanen
Software Mentions: 3
Published: over 9 years ago
10.1093/femsec/fiaa163
Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure
Cited by: 19
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Ôlav Vadstein, Madeleine S. Gundersen, Ingrid Bakke
Software Mentions: 3
Published: over 4 years ago
10.1007/s11356-018-3765-5
Inter-species and inter-colony differences in elemental concentrations in eggshells of sympatrically nesting great cormorants Phalacrocorax carbo and grey herons Ardea cinerea
Cited by: 2
Author(s): Dariusz Jakubas, Ignacy Kitowski, Dariusz Wiącek, Szymon Bzoma
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12859-020-3497-7
A novel investigation of the effect of iterations in sliding semi-landmarks for 3D human facial images
Cited by: 1
Author(s): Azree Nazri, Olalekan Agbolade, Razali Yaakob, Abdul Ghani, Yoke Kqueen Cheah
Software Mentions: 3
Published: over 4 years ago
10.7717/peerj.8571
Gynodioecy in the common spindle tree (<i>Euonymus europaeus</i>L.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowers
Cited by: 3
Author(s): Jiří Neustupa
Software Mentions: 3
Published: almost 5 years ago
10.1002/fsn3.2377
Bacterial composition and function during fermentation of Mongolia koumiss
Cited by: 8
Author(s): Yue Wu, Yu Liu, Qimu Gesudu, Juntao Zhang, Zhihong Sun, Halatu Haobisi, Bilige Menghe, Wenjun Liu
Software Mentions: 3
Published: over 3 years ago
10.3390/insects12020127
Biocontrol of Melolontha spp. Grubs in Organic Strawberry Plantations by Entomopathogenic Fungi as Affected by Environmental and Metabolic Factors and the Interaction with Soil Microbial Biodiversity
Cited by: 8
Author(s): Małgorzata Tartanus, Ewa M. Furmanczyk, Loredana Canfora, Flavia Pinzari, C. Tkaczuk, A. Majchrowska-Safaryan, Eligio Malusà
Software Mentions: 3
Published: almost 4 years ago
10.1186/s42523-021-00077-5
Ceftiofur reduced Fusobacterium leading to uterine microbiota alteration in dairy cows with metritis
Cited by: 9
Author(s): Seong-Jeub Jeon, Federico Cunha, R. Daetz, R.C. Bicalho, Svetlana Lima, Klibs N. Galvão
Software Mentions: 3
Published: almost 4 years ago
10.7717/peerj.5974
Genetic and phenotypic differentiation of lumpfish (<i>Cyclopterus lumpus</i>) across the North Atlantic: implications for conservation and aquaculture
Cited by: 23
Author(s): Benjamin Alexander Whittaker, Sofía Consuegra, Carlos García de Leániz
Software Mentions: 3
Published: about 6 years ago
10.1002/ece3.2942
Little association of biological trait values with environmental variables in invasive alien round goby (<i>Neogobius melanostomus</i>)
Cited by: 12
Author(s): Alexander F. Cerwenka, Alfredo Pagnotta, Carolin Elisabeth Böker, Joerg Brandner, Juergen Geist, Ulrich K. Schliewen
Software Mentions: 3
Published: over 7 years ago
10.1098/rspb.2019.0296
Network modularity influences plant reproduction in a mosaic tropical agroecosystem
Cited by: 19
Author(s): Manu E. Saunders, Romina Rader
Software Mentions: 3
Published: over 5 years ago
10.3390/plants10010104
CRISPR/Cas9-Mediated Knockout of HOS1 Reveals Its Role in the Regulation of Secondary Metabolism in Arabidopsis thaliana
Cited by: 14
Author(s): Yuri N. Shkryl, Yulia A. Yugay, Т.В. Авраменко, Valeria P. Grigorchuk, Tatiana Y. Gorpenchenko, Olga Grischenko, Victor P. Bulgakov
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.3138
Snails in the desert: Species diversification of <i>Theba</i> (Gastropoda: Helicidae) along the Atlantic coast of <scp>NW</scp> Africa
Cited by: 7
Author(s): Carola Greve, Martín Haase, Rainer Hutterer, Dennis Rödder, Flora Ihlow, Bernhard Misof
Software Mentions: 3
Published: over 7 years ago
10.1002/ece3.7846
Female and male Eurasian lynx have distinct spatial tactics at different life‐history stages in a high‐density population
Cited by: 3
Author(s): Deniz Mengüllüoğlu, Sarah Edwards, Heribert Hofer, Anne Berger
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj-cs.249
Landmark-based homologous multi-point warping approach to 3D facial recognition using multiple datasets
Cited by: 4
Author(s): Olalekan Agbolade, Azree Nazri, Razali Yaakob, Abdul Ghani, Yoke Kqueen Cheah
Software Mentions: 3
Published: almost 5 years ago
10.3389/fmicb.2017.00232
Response of Deep Subsurface Microbial Community to Different Carbon Sources and Electron Acceptors during ∼2 months Incubation in Microcosms
Cited by: 30
Author(s): Lotta Purkamo, Malin Bomberg, Mari Nyyssönen, Lasse Ahonen, Ilmo Kukkonen, Merja Itävaara
Software Mentions: 3
Published: almost 8 years ago
10.1002/ece3.5024
Availability of food resources and habitat structure shape the individual‐resource network of a Neotropical marsupial
Cited by: 15
Author(s): Nícholas F. de Camargo, Hernani Oliveira, Juliana Fernandes Ribeiro, A. J. A. de Camargo, Emerson M. Vieira
Software Mentions: 3
Published: over 5 years ago
10.1128/AEM.02885-19
Nutrient Level Determines Biofilm Characteristics and Subsequent Impact on Microbial Corrosion and Biocide Effectiveness
Cited by: 48
Author(s): Silvia J. Salgar-Chaparro, Kateřina Lepková, Thunyaluk Pojtanabuntoeng, Adam Darwin, Laura L. Machuca
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.1555
Size matters: nest colonization patterns for twig‐nesting ants
Cited by: 31
Author(s): Estelí Jiménez‐Soto, Stacy M. Philpott
Software Mentions: 3
Published: over 9 years ago
10.1186/s12864-017-3606-9
The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
Cited by: 268
Author(s): Ignazio Verde, Jerry Jenkins, Luca Dondini, Simona Micali, Giulia Pagliarani, Elisa Vendramin, Roberta Paris, Valeria Aramini, Laura Gazza, Laura Rossini, D. Bassi, Michela Troggio, Shengqiang Shu, Jane Grimwood, Stefano Tartarini, Maria Teresa Dettori, Jeremy Schmutz
Software Mentions: 3
Published: over 7 years ago
10.1002/ece3.4859
Physical, but not chemical, antiherbivore defense expression is related to the clustered spatial distribution of tropical trees in an Amazonian forest
Cited by: 7
Author(s): Johanna Cobo-Quinche, María‐José Endara, Renato Valencia, Dolly Muñoz-Upegui, Rafael E. Cárdenas
Software Mentions: 3
Published: almost 6 years ago
10.3390/microorganisms9010075
On-Site Blackwater Treatment Fosters Microbial Groups and Functions to Efficiently and Robustly Recover Carbon and Nutrients
Cited by: 3
Author(s): Eiko E. Kuramae, Maurício R. Dimitrov, Gustavo H. R. da Silva, Adriano Reis Lucheta, Lucas William Mendes, Ronildson Lima Luz, Louise E. M. Vet, Tânia V. Fernandes
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.4105
Strong associations between plant genotypes and bacterial communities in a natural salt marsh
Cited by: 24
Author(s): Gregory P. Zogg, Steven E. Travis, Daniel A. Brazeau
Software Mentions: 3
Published: over 6 years ago
10.1007/s00248-016-0775-z
Nitrate and the Origin of Saliva Influence Composition and Short Chain Fatty Acid Production of Oral Microcosms
Cited by: 50
Author(s): Jessica E. Koopman, Mark J. Buijs, Bernd W. Brandt, Bart J. F. Keijser, Wim Crielaard, Egija Zaura
Software Mentions: 3
Published: over 8 years ago
10.1128/AEM.02189-20
Dichotomy between Regulation of Coral Bacterial Communities and Calcification Physiology under Ocean Acidification Conditions
Cited by: 8
Author(s): Amanda Shore, Rusty D. Day, Joseph Stewart, Colleen A. Burge
Software Mentions: 3
Published: over 3 years ago
10.1007/s00248-016-0748-2
Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?
Cited by: 254
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 3
Published: over 8 years ago
10.1007/s00248-020-01565-y
Canopy Position Has a Stronger Effect than Tree Species Identity on Phyllosphere Bacterial Diversity in a Floodplain Hardwood Forest
Cited by: 12
Author(s): Martina Herrmann, Patricia Geesink, Ronny Richter, Kirsten Küsel
Software Mentions: 3
Published: over 4 years ago
10.1007/s00248-020-01543-4
Unveiling the Microbiota Diversity of the Xerophyte Argania spinosa L. Skeels Root System and Residuesphere
Cited by: 6
Author(s): Francesca Mapelli, Valentina Riva, Lorenzo Vergani, Redouane Choukr‐Allah, Sara Borin
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.5656
To remain or leave: Dispersal variation and its genetic consequences in benthic freshwater invertebrates
Cited by: 2
Author(s): Paolo Ruggeri, Ellen Pasternak, Beth Okamura
Software Mentions: 3
Published: about 5 years ago
10.1002/ece3.1950
Molecular and iridescent feather reflectance data reveal recent genetic diversification and phenotypic differentiation in a cloud forest hummingbird
Cited by: 19
Author(s): Juan Francisco Ornelas, Clementina González, Blanca E. Hernández‐Baños, Jaime García‐Moreno
Software Mentions: 3
Published: almost 9 years ago
10.1038/s41598-020-73540-z
Stable isotope evidence for dietary diversification in the pre-Columbian Amazon
Cited by: 12
Author(s): André Carlo Colonese, Rachel Winter, Rafael Brandi, Thiago Fossile, Ricardo Fernandes, Silvia Soncin, Krista McGrath, Matthew von Tersch, Arkley Marques Bandeira
Software Mentions: 3
Published: about 4 years ago
10.1002/ece3.908
Expanding the understanding of local community assembly in adaptive radiations
Cited by: 5
Author(s): Katharina C. Wollenberg, Michael Veith, Stefan Lötters
Software Mentions: 3
Published: almost 11 years ago
10.1002/ece3.646
Environmental effects on molecular and phenotypic variation in populations of<i>Eruca sativa</i>across a steep climatic gradient
Cited by: 31
Author(s): Erik Westberg, Shachar Ohali, Anatoly Shevelevich, Pinchas Fine, Oz Barazani
Software Mentions: 3
Published: over 11 years ago
10.1002/ece3.5713
Rapid redistribution of agricultural land alters avian richness, abundance, and functional diversity
Cited by: 6
Author(s): Stephen Pringle, Ngoni Chiweshe, Peter Steward, Peter J. Mundy, Martin Dallimer
Software Mentions: 3
Published: about 5 years ago
10.3390/microorganisms9081704
The Sisal Virome: Uncovering the Viral Diversity of Agave Varieties Reveals New and Organ-Specific Viruses
Cited by: 3
Author(s): Gabriel Quintanilha-Peixoto, Paula Luize Camargos Fonseca, Fábio Trigo Raya, Marina Püpke Marone, Dener Eduardo Bortolini, Piotr A. Mieczkowski, Roenick Proveti Olmo, Marcelo Falsarella Carazzolle, Christian A. Voigt, Ana Cristina Fermino Soares, Gonçalo Amarante Guimarães Pereira, Aristóteles Goés-Neto, Eric Roberto Guimarães Rocha Aguiar
Software Mentions: 3
Published: over 3 years ago
10.3390/microorganisms9051024
Isoprene-Degrading Bacteria from Soils Associated with Tropical Economic Crops and Framework Forest Trees
Cited by: 2
Author(s): Toungporn Uttarotai, Boyd A. McKew, Farid Benyahia, J. Colin Murrell, Wuttichai Mhuantong, Sunanta Wangkarn, Thararat Chitov, Sakunnee Bovonsombut, Terry J. McGenity
Software Mentions: 3
Published: over 3 years ago
10.3390/molecules26061546
A Novel Validated Injectable Colistimethate Sodium Analysis Combining Advanced Chemometrics and Design of Experiments
Cited by: 3
Author(s): Ioanna Dagla, Anthony Tsarbopoulos, Evagelos Gikas
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.8075
High genetic and epigenetic variation of transposable elements: Potential drivers to rapid adaptive evolution for the noxious invasive weed <i>Mikania micrantha</i>
Cited by: 5
Author(s): Yingjuan Su, Qiqi Huang, Zhen Wang, Ting Wang
Software Mentions: 3
Published: about 3 years ago
10.1038/s41598-021-96842-2
Genomic comparisons and phylogenetic analysis of mastitis-related staphylococci with a focus on adhesion, biofilm, and related regulatory genes
Cited by: 6
Author(s): Lucas José Luduverio Pizauro, Camila Chioda de Almeida, Saura R. Silva, Janet I. MacInnes, Andrew M. Kropinski, L. F. Zafalon, Fernando Antônio de Ávila, Alessandro de Mello Varani
Software Mentions: 3
Published: about 3 years ago
10.1002/ece3.4678
Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coral <i>Acropora cervicornis</i>
Cited by: 35
Author(s): Javier Rodríguez-Casariego, Mark C. Ladd, Andrew A. Shantz, Christian Lopes, Manjinder S. Cheema, Bohyun Kim, Steven B. Roberts, James W. Fourqurean, Juan Ausió, Deron E. Burkepile, José M. Eirín‐López
Software Mentions: 3
Published: almost 6 years ago
10.3390/cells9122700
Differentially Expressed Genes Shared by Two Distinct Cytoplasmic Male Sterility (CMS) Types of Silene vulgaris Suggest the Importance of Oxidative Stress in Pollen Abortion
Cited by: 6
Author(s): Manuela Krüger, Oushadee A. J. Abeyawardana, Claudia Krüger, Miloslav Juříček, Helena Štorchová
Software Mentions: 3
Published: almost 4 years ago
10.3390/microorganisms8111708
Bacterial Communities in the Rhizosphere and Phyllosphere of Halophytes and Drought-Tolerant Plants in Mediterranean Ecosystems
Cited by: 11
Author(s): Savvas Genitsaris, Natassa Stefanidou, Kleopatra Leontidou, Theodora Matsi, Katerina Karamanoli, Ιfigeneia Mellidou
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0218257
Microbiota data from low biomass milk samples is markedly affected by laboratory and reagent contamination
Cited by: 35
Author(s): Josef Dahlberg, Li Sun, Karin Persson Waller, K. Östensson, Mark A. McGuire, Sigrid Agenäs, Johan Dicksved
Software Mentions: 3
Published: over 5 years ago
10.3390/cells8060623
Functionally Significant Features in the 5′ Untranslated Region of the ABCA1 Gene and Their Comparison in Vertebrates
Cited by: 10
Author(s): Pavel Dvořák, Sarah Leupen, Pavel Souček
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0105515
Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region
Cited by: 85
Author(s): Annamaria Bevivino, Patrizia Paganin, Giovanni Bacci, Alessandro Florio, Maite Sampedro Pellicer, Maria Cristiana Papaleo, Alessio Mengoni, Luigi Ledda, Renato Fani, Antonio Benedetti, Claudia Dalmastri
Software Mentions: 3
Published: over 10 years ago
10.1186/s12862-017-1038-4
Historical biogeography and ecological niche modelling of the Asimina-Disepalum clade (Annonaceae): role of ecological differentiation in Neotropical-Asian disjunctions and diversification in Asia
Cited by: 13
Author(s): Pui-Sze Li, Daniel C. Thomas, Richard M. Saunders
Software Mentions: 3
Published: over 7 years ago
10.1186/s12862-015-0425-y
Cytotype diversity and genome size variation in Knautia (Caprifoliaceae, Dipsacoideae)
Cited by: 29
Author(s): Božo Frajman, Ivana Rešetnik, Hanna Weiss‐Schneeweiss, Friedrich Ehrendorfer
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0108924
Fecal Bacterial Community Changes Associated with Isoflavone Metabolites in Postmenopausal Women after Soy Bar Consumption
Cited by: 82
Author(s): Cindy H. Nakatsu, Arthur Armstrong, Andrea Clavijo, Berdine R. Martin, Stephen Barnes, Connie M. Weaver
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pone.0173029
Exploring gastric bacterial community in young pigs
Cited by: 8
Author(s): Vincenzo Motta, Paolo Trevisi, Francesca Bertolini, Anisa Ribani, Giuseppina Schiavo, Luca Fontanesi, Paolo Bosi
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0228976
Seasonal and social factors associated with spacing in a wild territorial electric fish
Cited by: 7
Author(s): Lucía Zubizarreta, Laura Quintana, Daniel Hernández, Franco Teixeira de Mello, Mariana Meerhoff, Renato Massaaki Honji, Renata Guimarães Moreira, Ana C. Silva
Software Mentions: 3
Published: over 4 years ago
10.1186/s40168-018-0597-y
Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host
Cited by: 95
Author(s): Ramona Marasco, María J. Mosqueira, Marco Fusi, Jean‐Baptiste Ramond, Giuseppe Merlino, Jenny Marie Booth, Gillian Maggs‐Kölling, Don A. Cowan, Daniele Daffonchio
Software Mentions: 3
Published: almost 6 years ago
10.1186/s40168-017-0284-4
Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice
Cited by: 28
Author(s): Phillip T. Brooks, Kelsey A. Brakel, Julia A. Bell, Christopher E. Bejcek, Trey E. Gilpin, Jean M. Brudvig, Linda S. Mansfield
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0034339
Radiating on Oceanic Islands: Patterns and Processes of Speciation in the Land Snail Genus Theba (Risso 1826)
Cited by: 23
Author(s): Carola Greve, Rainer Hutterer, Bernhard Misof, Martín Haase
Software Mentions: 3
Published: over 12 years ago
10.1371/journal.pone.0124146
The Role of Temporal Abundance Structure and Habitat Preferences in the Survival of Conodonts during the Mid-Early Silurian Ireviken Mass Extinction Event
Cited by: 13
Author(s): Andrej Spiridonov, Antanas Brazauskas, Sigitas Radzevičius
Software Mentions: 3
Published: over 9 years ago
10.1186/s40168-019-0753-z
The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study
Cited by: 20
Author(s): Josef Wagner, Ewan M. Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark A. Holmes, Julian Parkhill, Sharon J. Peacock, David Jayne, Andreas Kronbichler
Software Mentions: 3
Published: about 5 years ago
10.1186/s40168-021-01041-w
Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites
Cited by: 29
Author(s): Denise P. Silva, Helena Villela, Henrique F. Santos, Gabriela Duarte, José Roberto de Assis Ribeiro, Angela Michelato Ghizelini, Caren L. S. Vilela, Phillipe M. Rosado, Carolline S. Fazolato, Erika P. Santoro, Flávia Lima do Carmo, Dalton S. Ximenes, Adriana U. Soriano, Caio T. C. C. Rachid, Rebecca L. Vega Thurber, Raquel S. Peixoto
Software Mentions: 3
Published: over 3 years ago
10.1186/s12862-018-1308-9
Seed size evolution and biogeography of Plukenetia (Euphorbiaceae), a pantropical genus with traditionally cultivated oilseed species
Cited by: 16
Author(s): Warren M. Cardinal‐McTeague, Kenneth J. Wurdack, Erin M. Sigel, Lynn J. Gillespie
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0250452
eDNA as a tool for non-invasive monitoring of the fauna of a turbid, well-mixed system, the Elbe estuary in Germany
Cited by: 12
Author(s): Martin Schwentner, Reza Zahiri, Satoshi Yamamoto, Martin Husemann, Björn Kullmann, Ralf Thiel
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0078613
Distinct Phyllosphere Bacterial Communities on Arabidopsis Wax Mutant Leaves
Cited by: 77
Author(s): Eva E. Reisberg, U. Hildebrandt, Markus Riederer, Ute Hentschel
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pone.0191913
Metabarcoding analysis of eukaryotic microbiota in the gut of HIV-infected patients
Cited by: 20
Author(s): Ibrahim Hamad, Rita Abou Abdallah, Isabelle Ravaux, Saadia Mokhtari, Hervé Tissot‐Dupont, Caroline Michelle, Andréas Stein, Jean-Christophe Lagier, Didier Raoult, Fadi Bittar
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0157890
Repeatability, Reproducibility, Separative Power and Subjectivity of Different Fish Morphometric Analysis Methods
Cited by: 24
Author(s): Péter Takács, Zoltán Vitál, Árpád Ferincz, Ádám Staszny
Software Mentions: 3
Published: over 8 years ago
10.1186/s40168-021-00999-x
Genomic evidence for sulfur intermediates as new biogeochemical hubs in a model aquatic microbial ecosystem
Cited by: 25
Author(s): Adrien Vigneron, Perrine Cruaud, Alexander I. Culley, Raoul-Marie Couture, Connie Lovejoy, Warwick F. Vincent
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0194646
Role of oceanography in shaping the genetic structure in the North Pacific hake Merluccius productus
Cited by: 17
Author(s): Francisco J. Garcı́a de León, Carolina Galván‐Tirado, Laura Sánchez Velasco, Claudia A. Silva‐Segundo, Rafael Hernández‐Guzmán, Irene de los A. Barriga-Sosa, Píndaro Díaz Jaimes, Michael F. Canino, Pedro Cruz‐Hernández
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0059927
Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment
Cited by: 39
Author(s): Joseph P. Peacock, Jesse Cole, Senthil K. Murugapiran, Jeremy A. Dodsworth, James S. Fisher, Duane P. Moser, Brian P. Hedlund
Software Mentions: 3
Published: over 11 years ago
10.1264/jsme2.ME20110
Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales
Cited by: 3
Author(s): Sang Hoon Lee, Taek Seung Kim, Hee Deung Park
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2148-12-139
Towards a model of postglacial biogeography in shallow marine species along the Patagonian Province: lessons from the limpet Nacella magellanica (Gmelin, 1791)
Cited by: 43
Author(s): Claudio A. González‐Wevar, Mathias Hüne, Juan I. Cañete, Andrés Mansilla, Tomoyuki Nakano, Élie Poulin
Software Mentions: 3
Published: almost 13 years ago
10.1264/jsme2.ME17135
Plant Materials are Sustainable Substrates Supporting New Technologies of Plant-Only-Based Culture Media for &lt;i&gt;in vitro&lt;/i&gt; Culturing of the Plant Microbiota
Cited by: 20
Author(s): Elhussein F. Mourad, Mohamed S. Sarhan, Hassan-Sibroe A. Daanaa, Mennatullah Abdou, Ahmed Morsi, Mohamed R. Abdelfadeel, Hend Elsawey, Rahma A. Nemr, Mahmoud El-Tahan, M. Hamza, Mohamed Abbas, Hanan H. Youssef, Abdelhadi A. Abdelhadi, Wafaa M. Amer, M. B. E. Fayez, Silke Ruppel, N. A. Hegazi
Software Mentions: 3
Published: almost 7 years ago
10.1186/s13568-016-0284-y
Bacterial and archeal community composition in hot springs from Indo-Burma region, North-east India
Cited by: 51
Author(s): Amrita Kumari Panda, Satpal Singh Bisht, Surajit De Mandal, Nachimuthu Senthil Kumar
Software Mentions: 3
Published: about 8 years ago