bioconductor: PAST | Projects | Ecosyste.ms: Papers

10.1111/tpj.12600

The low‐recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression
Cited by: 31
Author(s): Katie Baker, Micha Bayer, Nicola Cook, Steven Dreißig, Taniya Dhillon, Joanne Russell, Pete E. Hedley, Jenny Morris, Luke Ramsay, Isabelle Colas, Robbie Waugh, Brian J. Steffenson, Iain Milne, Gordon Stephen, David Marshall, Andrew J. Flavell
Software Mentions: 3
Published: almost 11 years ago

10.7717/peerj-cs.249

Landmark-based homologous multi-point warping approach to 3D facial recognition using multiple datasets
Cited by: 4
Author(s): Olalekan Agbolade, Azree Nazri, Razali Yaakob, Abdul Ghani, Yoke Kqueen Cheah
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.634960

Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla
Cited by: 3
Author(s): Witoon Purahong, Shakhawat Hossen, Ali Nawaz, Dolaya Sadubsarn, Benjawan Tanunchai, Sven Dommert, Matthias Noll, La‐aw Ampornpan, Petcharat Werukamkul, Tesfaye Wubet
Software Mentions: 3
Published: about 4 years ago

10.3390/plants10010104

CRISPR/Cas9-Mediated Knockout of HOS1 Reveals Its Role in the Regulation of Secondary Metabolism in Arabidopsis thaliana
Cited by: 14
Author(s): Yuri N. Shkryl, Yulia A. Yugay, Т.В. Авраменко, Valeria P. Grigorchuk, Tatiana Y. Gorpenchenko, Olga Grischenko, Victor P. Bulgakov
Software Mentions: 3
Published: over 4 years ago

10.3390/genes12040545

A Complex Gene Network Mediated by Ethylene Signal Transduction TFs Defines the Flower Induction and Differentiation in Olea europaea L.
Cited by: 2
Author(s): Amelia Salimonti, Ivano Forgione, Tiziana Maria Sirangelo, Guglielmo Puccio, Antonio Mauceri, Francesco Mercati, Francesco Sunseri, Fabrizio Carbone
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.1702

Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice
Cited by: 34
Author(s): José F. García-Mazcorro, Ivan Ivanov, David A. Mills, Giuliana Noratto
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.3511

The identification of Oligo-Miocene mammalian palaeocommunities from the Riversleigh World Heritage Area, Australia and an appraisal of palaeoecological techniques
Cited by: 8
Author(s): Troy Myers, Karen H. Black, Michael Archer, Suzanne J. Hand
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2019.00726

Negligible Impact of Perinatal Tulathromycin Metaphylaxis on the Developmental Dynamics of Fecal Microbiota and Their Accompanying Antimicrobial Resistome in Piglets
Cited by: 12
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brandi Burton, Brian Aldridge, James Lowe
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2016.00837

Differential Impacts of Willow and Mineral Fertilizer on Bacterial Communities and Biodegradation in Diesel Fuel Oil-Contaminated Soil
Cited by: 22
Author(s): Mary-Cathrine Leewis, Ondřej Uhlík, Serena Fraraccio, Kelly M. McFarlin, Anastasia Kottara, Catherine Glover, Tomáš Macek, Mary Beth Leigh
Software Mentions: 3
Published: about 9 years ago

10.7717/peerj.8571

Gynodioecy in the common spindle tree (Euonymus europaeusL.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowers
Cited by: 3
Author(s): Jiří Neustupa
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-020-3497-7

A novel investigation of the effect of iterations in sliding semi-landmarks for 3D human facial images
Cited by: 1
Author(s): Azree Nazri, Olalekan Agbolade, Razali Yaakob, Abdul Ghani, Yoke Kqueen Cheah
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2020.571400

Exploring the Influence of Signal Molecules on Marine Biofilms Development
Cited by: 14
Author(s): Ruojun Wang, Wei Ding, Lexin Long, Yi Lan, Haoya Tong, Subhasish Saha, Yue Him Wong, Jin Sun, Yong-Xin Li, Weipeng Zhang, Pei‐Yuan Qian
Software Mentions: 3
Published: over 4 years ago

10.3389/fphar.2021.623070

Insular Pharmacopoeias: Ethnobotanical Characteristics of Medicinal Plants Used on the Adriatic Islands
Cited by: 14
Author(s): Łukasz Łuczaj, Marija Jug-Dujaković, Katija Dolina, Mirjana Jeričević, Ivana Vitasović‐Kosić
Software Mentions: 3
Published: about 4 years ago

10.1093/gigascience/giy073

Arabidopsis phenotyping through geometric morphometrics
Cited by: 19
Author(s): Carlos Augusto Manacorda, Sebastián Asurmendi
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2017.00715

Relative Abundance and Diversity of Bacterial Methanotrophs at the Oxic–Anoxic Interface of the Congo Deep-Sea Fan
Cited by: 11
Author(s): Sandrine Bessette, Yann Moalic, Sébastien Gautey, Françoise Lesongeur, Anne Godfroy, Laurent Toffin
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2020.00285

The Distribution of Bathyarchaeota in Surface Sediments of the Pearl River Estuary Along Salinity Gradient
Cited by: 27
Author(s): Dayu Zou, Jie Pan, Zongbao Liu, Chuanlun Zhang, Hongbin Liu, Meng Li
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.00076

Fungal Genetics and Functional Diversity of Microbial Communities in the Soil under Long-Term Monoculture of Maize Using Different Cultivation Techniques
Cited by: 29
Author(s): Anna Gałązka, Jarosław Grządziel
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2018.00002

Transcriptome Analysis of a Bloom-Forming Cyanobacterium Microcystis aeruginosa during Ma-LMM01 Phage Infection
Cited by: 25
Author(s): Daichi Morimoto, Shigeko Kimura, Yoshihiko Sako, Takashi Yoshida
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.7970

Reconstructing the archosaur radiation using a Middle Triassic archosauriform tooth assemblage from Tanzania
Cited by: 7
Author(s): Devin K. Hoffman, Hunter R. Edwards, Paul M. Barrett, Sterling J. Nesbitt
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.01664

Microbial Community Changes in a Chlorinated Solvents Polluted Aquifer Over the Field Scale Treatment With Poly-3-Hydroxybutyrate as Amendment
Cited by: 26
Author(s): Bruna Matturro, Lucia Pierro, Emanuela Frascadore, Marco Petrangeli Papini, Simona Rossetti
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2019.00594

High-Throughput Illumina MiSeq Amplicon Sequencing of Yeast Communities Associated With Indigenous Dairy Products From Republics of Benin and Niger
Cited by: 14
Author(s): Philippe Sessou, Santosh Keisam, Ngangyola Tuikhar, Mariama Gagara, Souaïbou Farougou, Kumaraswamy Jeyaram
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.1589

Cranial ontogenetic variation in early saurischians and the role of heterochrony in the diversification of predatory dinosaurs
Cited by: 40
Author(s): Christian Foth, Brandon P Hedrick, Martín D. Ezcurra
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2016.00462

Carrageenan Gum and Adherent Invasive Escherichia coli in a Piglet Model of Inflammatory Bowel Disease: Impact on Intestinal Mucosa-associated Microbiota
Cited by: 41
Author(s): Peris M. Munyaka, Shadi Sepehri, Jean–Eric Ghia, Ehsan Khafipour
Software Mentions: 3
Published: over 9 years ago

10.1007/s00027-019-0643-2

Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient
Cited by: 14
Author(s): Anna Waibel, Hannes Peter, Rubén Sommaruga
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.4174

Is there a link between aging and microbiome diversity in exceptional mammalian longevity?
Cited by: 26
Author(s): Graham M. Hughes, John Leech, Sébastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2180-12-122

Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system
Cited by: 82
Author(s): Vicente Gomez-Alvarez, Randy P. Revetta, Jorge W. Santo Domingo
Software Mentions: 3
Published: about 13 years ago

10.3389/fmicb.2017.02319

Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams
Cited by: 50
Author(s): Ze Ren, Fang Wang, Xiaodong Qu, James J. Elser, Yang Liu, Limin Chu
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2018.01251

Gut Bacterial Communities of Dendroctonus valens and Monoterpenes and Carbohydrates of Pinus tabuliformis at Different Attack Densities to Host Pines
Cited by: 7
Author(s): Dandan Xu, Letian Xu, Fangyuan Zhou, Bo Wang, Shanshan Wang, Min Lü, Jianghua Sun
Software Mentions: 3
Published: about 7 years ago

10.1186/1756-3305-6-228

The compositional landscape of minicircle sequences isolated from active lesions and scars of American cutaneous leishmaniasis
Cited by: 5
Author(s): Eduardo Henrique Gomes Rodrigues, Fábia Carla da Silva Soares, Roberto P. Werkhäuser, Maria Edileuza Felinto de Brito, Octávio Fernandes, Frederico G. C. Abath, Adeílton Brandão
Software Mentions: 3
Published: almost 12 years ago

10.3389/fmicb.2019.02907

A New High Throughput Sequencing Assay for Characterizing the Diversity of Natural Vibrio Communities and Its Application to a Pacific Oyster Mortality Event
Cited by: 22
Author(s): William L. King, Nachshon Siboni, Tim Kahlke, Timothy Green, Maurizio Labbate, Justin R. Seymour
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.00440

Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific
Cited by: 113
Author(s): Catarina Cúcio, Aschwin H. Engelen, Rodrigo Costa, Gerard Muyzer
Software Mentions: 3
Published: over 9 years ago

10.1186/s12859-014-0361-7

Tools for T-RFLP data analysis using Excel
Cited by: 15
Author(s): Nils Johan Fredriksson, Malte Hermansson, Britt‐Marie Wilén
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2015.01297

Particle-Associated Differ from Free-Living Bacteria in Surface Waters of the Baltic Sea
Cited by: 132
Author(s): Angelika Rieck, Daniel P. R. Herlemann, Klaus Jürgens, Hans‐Peter Grossart
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2013.00253

Plant soil interactions alter carbon cycling in an upland grassland soil
Cited by: 22
Author(s): Bruce C. Thomson, Nicholas J. Ostle, Niall P. McNamara, Simon Oakley, Andrew S. Whiteley, Mark Bailey, Robert I. Griffiths
Software Mentions: 3
Published: over 12 years ago

10.3389/fmicb.2018.00578

Benthic Algal Community Structures and Their Response to Geographic Distance and Environmental Variables in the Qinghai-Tibetan Lakes With Different Salinity
Cited by: 23
Author(s): Jian Yang, Hongchen Jiang, Wen Liu, Beichen Wang
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2019.02271

Distinct Successions of Common and Rare Bacteria in Soil Under Humic Acid Amendment – A Microcosm Study
Cited by: 30
Author(s): Pengfa Li, Jia Liu, Chunyu Jiang, Meng Wu, Ming Liu, Zhongpei Li
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2015.01300

Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest Ecosystems
Cited by: 117
Author(s): Kezia Goldmann, Ingo Schöning, François Buscot, Tesfaye Wubet
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2021.629169

Targeting the Active Rhizosphere Microbiome of Trifolium pratense in Grassland Evidences a Stronger-Than-Expected Belowground Biodiversity-Ecosystem Functioning Link
Cited by: 15
Author(s): Sara Fareed Mohamed Wahdan, Anna Heintz‐Buschart, Chakriya Sansupa, Benjawan Tanunchai, Yuting Wu, Martin Schädler, Matthias Noll, Witoon Purahong, François Buscot
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.02511

Succession of Bacterial Communities in a Seasonally Stratified Lake with an Anoxic and Sulfidic Hypolimnion
Cited by: 42
Author(s): Muhe Diao, Ruben Sinnige, Karsten Kalbitz, Jef Huisman, Gerard Muyzer
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2016.00426

The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis
Cited by: 42
Author(s): Hooman Derakhshani, Jeroen De Buck, Rienske A.R. Mortier, Herman W. Barkema, Denis O. Krause, Ehsan Khafipour
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2019.01666

Compositional Shifts of Bacterial Communities Associated With Pyropia yezoensis and Surrounding Seawater Co-occurring With Red Rot Disease
Cited by: 14
Author(s): Yonggang Yan, Huichao Yang, Lei Tang, Jie Li, Yunxiang Mao, Zhaolan Mo
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2018.02120

Determinants of Deadwood-Inhabiting Fungal Communities in Temperate Forests: Molecular Evidence From a Large Scale Deadwood Decomposition Experiment
Cited by: 39
Author(s): Witoon Purahong, Tesfaye Wubet, Guillaume Lentendu, Björn Hoppe, Katalee Jariyavidyanont, Tobias Arnstadt, Kristin Baber, Peter Otto, Harald Kellner, Martin Hofrichter, Jürgen Bauhus, Wolfgang W. Weisser, Dirk Krüger, Ernst Detlef Schulze, Tiemo Kahl, François Buscot
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.5974

Genetic and phenotypic differentiation of lumpfish (Cyclopterus lumpus) across the North Atlantic: implications for conservation and aquaculture
Cited by: 23
Author(s): Benjamin Alexander Whittaker, Sofía Consuegra, Carlos García de Leániz
Software Mentions: 3
Published: over 6 years ago

10.1186/s42523-021-00077-5

Ceftiofur reduced Fusobacterium leading to uterine microbiota alteration in dairy cows with metritis
Cited by: 9
Author(s): Seong-Jeub Jeon, Federico Cunha, R. Daetz, R.C. Bicalho, Svetlana Lima, Klibs N. Galvão
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2018.00364

Substrate Shift Reveals Roles for Members of Bacterial Consortia in Degradation of Plant Cell Wall Polymers
Cited by: 27
Author(s): Camila Carlos, Huan Fan, Cameron R. Currie
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2019.00908

Bacterioplankton Community Composition Along Environmental Gradients in Lakes From Byers Peninsula (Maritime Antarctica) as Determined by Next-Generation Sequencing
Cited by: 25
Author(s): Antonio Picazo, Carlos Rochera, Juan Antonio Villaescusa, Javier Miralles‐Lorenzo, David Velázquez, Antonio Quesada, Antonio Camacho
Software Mentions: 3
Published: about 6 years ago

10.1128/AEM.02885-19

Nutrient Level Determines Biofilm Characteristics and Subsequent Impact on Microbial Corrosion and Biocide Effectiveness
Cited by: 48
Author(s): Silvia J. Salgar-Chaparro, Kateřina Lepková, Thunyaluk Pojtanabuntoeng, Adam Darwin, Laura L. Machuca
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-017-3606-9

The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
Cited by: 268
Author(s): Ignazio Verde, Jerry Jenkins, Luca Dondini, Simona Micali, Giulia Pagliarani, Elisa Vendramin, Roberta Paris, Valeria Aramini, Laura Gazza, Laura Rossini, D. Bassi, Michela Troggio, Shengqiang Shu, Jane Grimwood, Stefano Tartarini, Maria Teresa Dettori, Jeremy Schmutz
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2016.00284

Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure
Cited by: 42
Author(s): Deric R. Learman, Michael W. Henson, J. Cameron Thrash, Ben Temperton, Pamela M. Brannock, Scott R. Santos, Andrew R. Mahon, Kenneth M. Halanych
Software Mentions: 3
Published: over 9 years ago

10.3390/microorganisms9010075

On-Site Blackwater Treatment Fosters Microbial Groups and Functions to Efficiently and Robustly Recover Carbon and Nutrients
Cited by: 3
Author(s): Eiko E. Kuramae, Maurício R. Dimitrov, Gustavo H. R. da Silva, Adriano Reis Lucheta, Lucas William Mendes, Ronildson Lima Luz, Louise E. M. Vet, Tânia V. Fernandes
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.00431

Reactivation of Deep Subsurface Microbial Community in Response to Methane or Methanol Amendment
Cited by: 22
Author(s): Pauliina Rajala, Malin Bomberg
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2015.00674

Functional gene pyrosequencing reveals core proteobacterial denitrifiers in boreal lakes
Cited by: 45
Author(s): Jatta Saarenheimo, Marja Tiirola, Antti J. Rissanen
Software Mentions: 3
Published: about 10 years ago

10.1007/s00248-016-0775-z

Nitrate and the Origin of Saliva Influence Composition and Short Chain Fatty Acid Production of Oral Microcosms
Cited by: 50
Author(s): Jessica E. Koopman, Mark J. Buijs, Bernd W. Brandt, Bart J. F. Keijser, Wim Crielaard, Egija Zaura
Software Mentions: 3
Published: about 9 years ago

10.1128/AEM.02189-20

Dichotomy between Regulation of Coral Bacterial Communities and Calcification Physiology under Ocean Acidification Conditions
Cited by: 8
Author(s): Amanda Shore, Rusty D. Day, Joseph Stewart, Colleen A. Burge
Software Mentions: 3
Published: over 4 years ago

10.1002/fsn3.2377

Bacterial composition and function during fermentation of Mongolia koumiss
Cited by: 8
Author(s): Yue Wu, Yu Liu, Qimu Gesudu, Juntao Zhang, Zhihong Sun, Halatu Haobisi, Bilige Menghe, Wenjun Liu
Software Mentions: 3
Published: about 4 years ago

10.1007/s00248-020-01565-y

Canopy Position Has a Stronger Effect than Tree Species Identity on Phyllosphere Bacterial Diversity in a Floodplain Hardwood Forest
Cited by: 12
Author(s): Martina Herrmann, Patricia Geesink, Ronny Richter, Kirsten Küsel
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00248-020-01543-4

Unveiling the Microbiota Diversity of the Xerophyte Argania spinosa L. Skeels Root System and Residuesphere
Cited by: 6
Author(s): Francesca Mapelli, Valentina Riva, Lorenzo Vergani, Redouane Choukr‐Allah, Sara Borin
Software Mentions: 3
Published: about 5 years ago

10.1093/femsec/fiaa163

Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure
Cited by: 19
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Ôlav Vadstein, Madeleine S. Gundersen, Ingrid Bakke
Software Mentions: 3
Published: almost 5 years ago

10.1007/s11356-018-3765-5

Inter-species and inter-colony differences in elemental concentrations in eggshells of sympatrically nesting great cormorants Phalacrocorax carbo and grey herons Ardea cinerea
Cited by: 2
Author(s): Dariusz Jakubas, Ignacy Kitowski, Dariusz Wiącek, Szymon Bzoma
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0008932

Genetic diversity of Trypanosoma cruzi parasites infecting dogs in southern Louisiana sheds light on parasite transmission cycles and serological diagnostic performance
Cited by: 13
Author(s): Eric Dumonteil, Ardem Elmayan, Alicia Majeau, Weihong Tu, Brandy Duhon, Preston A. Marx, Wendy Wolfson, Garry Balsamo, Claudia Herrera
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.2942

Little association of biological trait values with environmental variables in invasive alien round goby (Neogobius melanostomus)
Cited by: 12
Author(s): Alexander F. Cerwenka, Alfredo Pagnotta, Carolin Elisabeth Böker, Joerg Brandner, Juergen Geist, Ulrich K. Schliewen
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.7846

Female and male Eurasian lynx have distinct spatial tactics at different life‐history stages in a high‐density population
Cited by: 3
Author(s): Deniz Mengüllüoğlu, Sarah Edwards, Heribert Hofer, Anne Berger
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0114570

Diversity, Distribution and Hydrocarbon Biodegradation Capabilities of Microbial Communities in Oil-Contaminated Cyanobacterial Mats from a Constructed Wetland
Cited by: 50
Author(s): Raeid M. M. Abed, Samiha Al-Kharusi, Stéphane Prigent, Tom R Headley
Software Mentions: 3
Published: over 10 years ago

10.3390/microorganisms9051024

Isoprene-Degrading Bacteria from Soils Associated with Tropical Economic Crops and Framework Forest Trees
Cited by: 2
Author(s): Toungporn Uttarotai, Boyd A. McKew, Farid Benyahia, J. Colin Murrell, Wuttichai Mhuantong, Sunanta Wangkarn, Thararat Chitov, Sakunnee Bovonsombut, Terry J. McGenity
Software Mentions: 3
Published: about 4 years ago

10.3390/molecules26061546

A Novel Validated Injectable Colistimethate Sodium Analysis Combining Advanced Chemometrics and Design of Experiments
Cited by: 3
Author(s): Ioanna Dagla, Anthony Tsarbopoulos, Evagelos Gikas
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.3138

Snails in the desert: Species diversification of Theba (Gastropoda: Helicidae) along the Atlantic coast of <scp>NW</scp> Africa
Cited by: 7
Author(s): Carola Greve, Martín Haase, Rainer Hutterer, Dennis Rödder, Flora Ihlow, Bernhard Misof
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-019-42207-9

Parallel sequencing of porA reveals a complex pattern of Campylobacter genotypes that differs between broiler and broiler breeder chickens
Cited by: 12
Author(s): Frances M. Colles, Stephen G. Preston, Kenneth Klingenberg Barfod, Patrik G. Flammer, Maiden Mcj., Adrian L. Smith
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2021.593023

Rhizodegradation of Pyrene by a Non-pathogenic Klebsiella pneumoniae Isolate Applied With Tagetes erecta L. and Changes in the Rhizobacterial Community
Cited by: 11
Author(s): Jina Rajkumari, Yashmin Choudhury, Kasturi Bhattacharjee, Piyush Pandey
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0032093

Spatial Scales of Bacterial Diversity in Cold-Water Coral Reef Ecosystems
Cited by: 39
Author(s): Sandra Schöttner, Christian Wild, Friederike Hoffmann, Antje Boetius, Alban Ramette
Software Mentions: 3
Published: over 13 years ago

10.3389/fmicb.2017.00232

Response of Deep Subsurface Microbial Community to Different Carbon Sources and Electron Acceptors during ∼2 months Incubation in Microcosms
Cited by: 30
Author(s): Lotta Purkamo, Malin Bomberg, Mari Nyyssönen, Lasse Ahonen, Ilmo Kukkonen, Merja Itävaara
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0093945

Uncoupling of Bacterial and Terrigenous Dissolved Organic Matter Dynamics in Decomposition Experiments
Cited by: 52
Author(s): Daniel P. R. Herlemann, Marcus Manecki, Christian Meeske, Falk Pollehne, Matthias Labrenz, Detlef E. Schulz‐Bull, Thorsten Dittmar, Klaus Jürgens
Software Mentions: 3
Published: over 11 years ago

10.3390/microorganisms8111708

Bacterial Communities in the Rhizosphere and Phyllosphere of Halophytes and Drought-Tolerant Plants in Mediterranean Ecosystems
Cited by: 11
Author(s): Savvas Genitsaris, Natassa Stefanidou, Kleopatra Leontidou, Theodora Matsi, Katerina Karamanoli, Ιfigeneia Mellidou
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0138557

How Do Landscape Structure, Management and Habitat Quality Drive the Colonization of Habitat Patches by the Dryad Butterfly (Lepidoptera: Satyrinae) in Fragmented Grassland?
Cited by: 15
Author(s): Konrad Kalarus, Piotr Nowicki
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0098472

Taxonomic Position and Phylogeny of the Genus Vargasiella (Orchidaceae, Vandoideae) Based on Molecular and Morphological Evidence
Cited by: 3
Author(s): Dariusz L. Szlachetko, Marcin Górniak, Marta Kolanowska, Joanna Mytnik‐Ejsmont, Agnieszka K. Kowalkowska, Piotr Rutkowski, Tomasz Koliński
Software Mentions: 3
Published: about 11 years ago

10.3390/ijms21113870

Time-course Transcriptome of Parageobacillus thermoglucosidasius DSM 6285 Grown in the Presence of Carbon Monoxide and Air
Cited by: 5
Author(s): Habibu Aliyu, Teresa Mohr, Don A. Cowan, Pieter De Maayer, Anke Neumann
Software Mentions: 3
Published: about 5 years ago

10.1186/s12862-017-1038-4

Historical biogeography and ecological niche modelling of the Asimina-Disepalum clade (Annonaceae): role of ecological differentiation in Neotropical-Asian disjunctions and diversification in Asia
Cited by: 13
Author(s): Pui-Sze Li, Daniel C. Thomas, Richard M. Saunders
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0218257

Microbiota data from low biomass milk samples is markedly affected by laboratory and reagent contamination
Cited by: 35
Author(s): Josef Dahlberg, Li Sun, Karin Persson Waller, K. Östensson, Mark A. McGuire, Sigrid Agenäs, Johan Dicksved
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0103003

ITS Polymorphisms Shed Light on Hybrid Evolution in Apomictic Plants: A Case Study on the Ranunculus auricomus Complex
Cited by: 39
Author(s): Ladislav Hodač, Armin Scheben, Diego Hojsgaard, Ovidiu Paun, Elvira Hörandl
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0069973

Tracking Fungal Community Responses to Maize Plants by DNA- and RNA-Based Pyrosequencing
Cited by: 25
Author(s): Eiko E. Kuramae, Erik Verbruggen, Remy Hillekens, Mattias de Hollander, Wilfred F. M. Röling, Marcel G. A. van der Heijden, George A. Kowalchuk
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0247810

Assessment of root phenotypes in mungbean mini-core collection (MMC) from the World Vegetable Center (AVRDC) Taiwan
Cited by: 9
Author(s): Muraleedhar S. Aski, Neha Rai, V. R. Reddy, Gayacharan, Harsh Kumar Dikshit, Gyan P. Mishra, Dharmendra Singh, Arun Kumar, Renu Pandey, Madan Pal Singh, Aditya Pratap, Ramakrishnan M. Nair, Roland Schafleitner
Software Mentions: 3
Published: over 4 years ago

10.1007/s00248-016-0748-2

Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?
Cited by: 254
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0108924

Fecal Bacterial Community Changes Associated with Isoflavone Metabolites in Postmenopausal Women after Soy Bar Consumption
Cited by: 82
Author(s): Cindy H. Nakatsu, Arthur Armstrong, Andrea Clavijo, Berdine R. Martin, Stephen Barnes, Connie M. Weaver
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0228811

Environmental DNA from plastic and textile marine litter detects exotic and nuisance species nearby ports
Cited by: 26
Author(s): Aitor Ibabe, Fernando Rayón, José Luis Martínez, Eva García‐Vázquez
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0228976

Seasonal and social factors associated with spacing in a wild territorial electric fish
Cited by: 7
Author(s): Lucía Zubizarreta, Laura Quintana, Daniel Hernández, Franco Teixeira de Mello, Mariana Meerhoff, Renato Massaaki Honji, Renata Guimarães Moreira, Ana C. Silva
Software Mentions: 3
Published: about 5 years ago

10.1186/s40168-018-0597-y

Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host
Cited by: 95
Author(s): Ramona Marasco, María J. Mosqueira, Marco Fusi, Jean‐Baptiste Ramond, Giuseppe Merlino, Jenny Marie Booth, Gillian Maggs‐Kölling, Don A. Cowan, Daniele Daffonchio
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-017-0284-4

Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice
Cited by: 28
Author(s): Phillip T. Brooks, Kelsey A. Brakel, Julia A. Bell, Christopher E. Bejcek, Trey E. Gilpin, Jean M. Brudvig, Linda S. Mansfield
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0034339

Radiating on Oceanic Islands: Patterns and Processes of Speciation in the Land Snail Genus Theba (Risso 1826)
Cited by: 23
Author(s): Carola Greve, Rainer Hutterer, Bernhard Misof, Martín Haase
Software Mentions: 3
Published: over 13 years ago

10.1186/s40168-019-0753-z

The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study
Cited by: 20
Author(s): Josef Wagner, Ewan M. Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark A. Holmes, Julian Parkhill, Sharon J. Peacock, David Jayne, Andreas Kronbichler
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40168-021-01041-w

Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites
Cited by: 29
Author(s): Denise P. Silva, Helena Villela, Henrique F. Santos, Gabriela Duarte, José Roberto de Assis Ribeiro, Angela Michelato Ghizelini, Caren L. S. Vilela, Phillipe M. Rosado, Carolline S. Fazolato, Erika P. Santoro, Flávia Lima do Carmo, Dalton S. Ximenes, Adriana U. Soriano, Caio T. C. C. Rachid, Rebecca L. Vega Thurber, Raquel S. Peixoto
Software Mentions: 3
Published: about 4 years ago

10.1186/s12862-018-1308-9

Seed size evolution and biogeography of Plukenetia (Euphorbiaceae), a pantropical genus with traditionally cultivated oilseed species
Cited by: 16
Author(s): Warren M. Cardinal‐McTeague, Kenneth J. Wurdack, Erin M. Sigel, Lynn J. Gillespie
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0250452

eDNA as a tool for non-invasive monitoring of the fauna of a turbid, well-mixed system, the Elbe estuary in Germany
Cited by: 12
Author(s): Martin Schwentner, Reza Zahiri, Satoshi Yamamoto, Martin Husemann, Björn Kullmann, Ralf Thiel
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0078613

Distinct Phyllosphere Bacterial Communities on Arabidopsis Wax Mutant Leaves
Cited by: 77
Author(s): Eva E. Reisberg, U. Hildebrandt, Markus Riederer, Ute Hentschel
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0191913

Metabarcoding analysis of eukaryotic microbiota in the gut of HIV-infected patients
Cited by: 20
Author(s): Ibrahim Hamad, Rita Abou Abdallah, Isabelle Ravaux, Saadia Mokhtari, Hervé Tissot‐Dupont, Caroline Michelle, Andréas Stein, Jean-Christophe Lagier, Didier Raoult, Fadi Bittar
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0157890

Repeatability, Reproducibility, Separative Power and Subjectivity of Different Fish Morphometric Analysis Methods
Cited by: 24
Author(s): Péter Takács, Zoltán Vitál, Árpád Ferincz, Ádám Staszny
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0194646

Role of oceanography in shaping the genetic structure in the North Pacific hake Merluccius productus
Cited by: 17
Author(s): Francisco J. Garcı́a de León, Carolina Galván‐Tirado, Laura Sánchez Velasco, Claudia A. Silva‐Segundo, Rafael Hernández‐Guzmán, Irene de los A. Barriga-Sosa, Píndaro Díaz Jaimes, Michael F. Canino, Pedro Cruz‐Hernández
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0059927

Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment
Cited by: 39
Author(s): Joseph P. Peacock, Jesse Cole, Senthil K. Murugapiran, Jeremy A. Dodsworth, James S. Fisher, Duane P. Moser, Brian P. Hedlund
Software Mentions: 3
Published: over 12 years ago

10.1264/jsme2.ME20110

Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales
Cited by: 3
Author(s): Sang Hoon Lee, Taek Seung Kim, Hee Deung Park
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2148-12-139

Towards a model of postglacial biogeography in shallow marine species along the Patagonian Province: lessons from the limpet Nacella magellanica (Gmelin, 1791)
Cited by: 43
Author(s): Claudio A. González‐Wevar, Mathias Hüne, Juan I. Cañete, Andrés Mansilla, Tomoyuki Nakano, Élie Poulin
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0250731

The abundance and diversity of fruit flies and their parasitoids change with elevation in guava orchards in a tropical Andean forest of Peru, independent of seasonality
Cited by: 5
Author(s): Paolo Salazar-Mendoza, Ivan Peralta-Aragón, Ladislao C. Romero-Rivas, Jordano Salamanca, Cesar Rodriguez‐Saona
Software Mentions: 3
Published: over 4 years ago

10.1264/jsme2.ME17135

Plant Materials are Sustainable Substrates Supporting New Technologies of Plant-Only-Based Culture Media for in vitro Culturing of the Plant Microbiota
Cited by: 20
Author(s): Elhussein F. Mourad, Mohamed S. Sarhan, Hassan-Sibroe A. Daanaa, Mennatullah Abdou, Ahmed Morsi, Mohamed R. Abdelfadeel, Hend Elsawey, Rahma A. Nemr, Mahmoud El-Tahan, M. Hamza, Mohamed Abbas, Hanan H. Youssef, Abdelhadi A. Abdelhadi, Wafaa M. Amer, M. B. E. Fayez, Silke Ruppel, N. A. Hegazi
Software Mentions: 3
Published: over 7 years ago

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