Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1002/fsn3.2377

https://doi.org/10.1002/fsn3.2377

Bacterial composition and function during fermentation of Mongolia koumiss

Cited by: 8
Author(s): Yue Wu, Yu Liu, Qimu Gesudu, Juntao Zhang, Zhihong Sun, Halatu Haobisi, Bilige Menghe, Wenjun Liu
Published: over 3 years ago

Software Mentions 3

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: PAST
Pathway Association Study Tool (PAST)
Papers that mentioned: 2,336
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306