bioconductor: GPA | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1009218

A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer
Cited by: 40
Author(s): Debashree Ray, Nilanjan Chatterjee
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0007526

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli
Cited by: 239
Author(s): Alfredo Mendoza-Vargas, Leticia Olvera, Maricela Olvera, Ricardo Grande, Leticia Vega‐Alvarado, Blanca Taboada, Verónica Jiménez-Jacinto, Heladia Salgado, Katy Juárez, Bruno Contreras‐Moreira, A. Huerta, Julio Collado‐Vides, Enrique Morett
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0194324

Differentiating percussion pits and carnivore tooth pits using 3D reconstructions and geometric morphometrics
Cited by: 37
Author(s): José Yravedra, Julia Aramendi, Miguel Ángel Maté‐González, Lloyd A. Courtenay, Diego González‐Aguilera
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0150368

A Landmark-Free Method for Three-Dimensional Shape Analysis
Cited by: 47
Author(s): Benjamin J Pomidor, Jana Makedonska, Dennis E. Slice
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0202931

Repeatability, reproducibility and consistency of horse shape data and its association with linearly described conformation traits in Franches-Montagnes stallions
Cited by: 13
Author(s): Annik Imogen Gmel, Thomas Druml, Katrin Portele, Rudolf von Niederhäusern, Markus Neuditschko
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0146166

Deconstructing a Species-Complex: Geometric Morphometric and Molecular Analyses Define Species in the Western Rattlesnake (Crotalus viridis)
Cited by: 23
Author(s): Mark A. Davis, Michael E. Douglas, Michael L. Collyer
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0165538

The Effect of Optic Disc Center Displacement on Retinal Nerve Fiber Layer Measurement Determined by Spectral Domain Optical Coherence Tomography
Cited by: 7
Author(s): Joong Won Shin, Yong Un Shin, Ki Bang Uhm, Kyung Rim Sung, Min Ho Kang, Hee Yoon Cho, Mincheol Seong
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0193816

Overexpression of the aphid-induced serine protease inhibitor CI2c gene in barley affects the generalist green peach aphid, not the specialist bird cherry-oat aphid
Cited by: 10
Author(s): Aleksandra Losvik, Lisa Beste, Jennifer Stephens, Lisbeth Jonsson
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0115641

“Heroes” and “Villains” of World History across Cultures
Cited by: 31
Author(s): Katja Hanke, James H. Liu, Chris G. Sibley, Darío Páez, Stanley O. Gaines, Gail Moloney, Chan‐Hoong Leong, Wolfgang Wagner, Laurent Licata, Olivier Klein, Ilya Garber, Gisela Böhm, Denis Hilton, Velichko H. Valchev, Sammyh S. Khan, Rosa Cabecinhas
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0081608

Is Torosaurus Triceratops? Geometric Morphometric Evidence of Late Maastrichtian Ceratopsid Dinosaurs
Cited by: 34
Author(s): Leonardo Maiorino, Andrew A. Farke, Tassos Kotsakis, Paolo Piras
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0048009

Relative Importance of Modularity and Other Morphological Attributes on Different Types of Lithic Point Weapons: Assessing Functional Variations
Cited by: 28
Author(s): Rolando González‐José, Judith Charlin
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0169507

The Assessment of Landscape Expressivity: A Free Choice Profiling Approach
Cited by: 5
Author(s): Stephan Harding, Sebastian E. Burch, Françoise Wemelsfelder
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0062672

Strain Field Mapping of Dislocations in a Ge/Si Heterostructure
Cited by: 11
Author(s): Quanlong Liu, Chunwang Zhao, Shaojian Su, Jijun Li, Yongming Xing, Buwen Cheng
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0129939

Ontogenetic Shape Change in the Chicken Brain: Implications for Paleontology
Cited by: 19
Author(s): Soichiro Kawabe, Seiji Matsuda, Naoki Tsunekawa, Hideki Endo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0227343

Bayesian multiple membership multiple classification logistic regression model on student performance with random effects in university instructors and majors
Cited by: 3
Author(s): Elsa Vazquez Arreola, Jeffrey R. Wilson
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0212618

Simulation of facial growth based on longitudinal data: Age progression and age regression between 7 and 17 years of age using 3D surface data
Cited by: 13
Author(s): J Koudelová, Eva Hoffmannová, Ján Dupej, Jana Velemínská
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0177321

Assessing medical professionalism: A systematic review of instruments and their measurement properties
Cited by: 62
Author(s): Honghe Li, Ning Ding, Yuanyuan Zhang, Yang Liu, Deliang Wen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0035804

Comparison of Handaxes from Bose Basin (China) and the Western Acheulean Indicates Convergence of Form, Not Cognitive Differences
Cited by: 53
Author(s): Wei Wang, Stephen J. Lycett, Noreen von Cramon‐Taubadel, Jennie J.H. Jin, Christopher J. Bae
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0026425

FGF/FGFR Signaling Coordinates Skull Development by Modulating Magnitude of Morphological Integration: Evidence from Apert Syndrome Mouse Models
Cited by: 50
Author(s): Neus Martínez‐Abadías, Yann Heuzé, Yingli Wang, Ethylin Wang Jabs, Kristina Aldridge, Joan T. Richtsmeier
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0214618

The effects of vocational interest on study results: Student person – environment fit and program interest diversity
Cited by: 9
Author(s): Stijn Schelfhout, Bart Wille, Lot Fonteyne, Elisabeth Roels, Filip De Fruyt, Wouter Duyck
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0190949

ShinyGPA: An interactive visualization toolkit for investigating pleiotropic architecture using GWAS datasets
Cited by: 3
Author(s): Emma Kortemeier, Paula S. Ramos, Kelly J. Hunt, Hang J. Kim, Gary Hardiman, Dongjun Chung
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0096515

The Morphometry of Soft Tissue Insertions on the Tibial Plateau: Data Acquisition and Statistical Shape Analysis
Cited by: 6
Author(s): Liying Zheng, Christopher D. Harner, Xudong Zhang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0200317

Automatic aortic valve landmark localization in coronary CT angiography using colonial walk
Cited by: 25
Author(s): Walid Abdullah Al, Ho Yub Jung, Il Dong Yun, Yeonggul Jang, Hyung Bok Park, Hyuk Jae Chang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0057368

A Geometric Morphometric Approach to the Analysis of Lip Shape during Speech: Development of a Clinical Outcome Measure
Cited by: 9
Author(s): Hashmat Popat, Stephen Richmond, Alexei I. Zhurov, Paul L. Rosin, David Marshall
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0189706

Impact of optic disc hemorrhage on subsequent glaucoma progression in mild-to-moderate myopia
Cited by: 5
Author(s): Ahnul Ha, Young Kook Kim, Jin Wook Jeoung, Ki Ho Park
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0041211

Persistence, Spatial Distribution and Implications for Progression Detection of Blind Parts of the Visual Field in Glaucoma: A Clinical Cohort Study
Cited by: 19
Author(s): Francisco G. Junoy Montolio, Christiaan Wesselink, Nomdo M. Jansonius
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0086896

4D-Analysis of Left Ventricular Heart Cycle Using Procrustes Motion Analysis
Cited by: 26
Author(s): Paolo Piras, A. Evangelista, Stefano Gabriele, Paola Nardinocchi, Luciano Teresi, Concetta Torromeo, Michele Schiariti, Valerio Varano, Paolo Emilio Puddu
Software Mentions: 1
Published: almost 11 years ago

10.3390/cancers13040844

Predicting Prognosis of Breast Cancer Patients with Brain Metastases in the BMBC Registry—Comparison of Three Different GPA Prognostic Scores
Cited by: 4
Author(s): K Riecke, Volkmar Müller, Rudolf Weide, Marcus Schmidt, Tjoung‐Won Park‐Simon, V. Möbus, Christoph Mundhenke, A Polasik, Kristina Lübbe, Tobias Hesse, Elena Laakmann, Marc Thill, Peter A. Fasching, Carsten Denkert, Tanja Fehm, Valentina Nekljudova, Julia Rey, Sibylle Loibl, Isabell Witzel
Software Mentions: 1
Published: almost 4 years ago

10.7759/cureus.5591

Patterns of Radiotherapy Utilization for Lung Cancer Patients with Brain Metastases: A Population-based Analysis
Cited by: 1
Author(s): Roel Schlijper, Ian Fraser, Jacqueline M. Regan, Shilo Lefresne, Cheryl Ho, Robert Olson
Software Mentions: 1
Published: about 5 years ago

10.1007/s40473-017-0136-3

Translational Genetic Modelling of 3D Craniofacial Dysmorphology: Elaborating the Facial Phenotype of Neurodevelopmental Disorders Through the “Prism” of Schizophrenia
Cited by: 7
Author(s): John L. Waddington, Stanislav Katina, Colm M. P. O’Tuathaigh, Adrian Bowman
Software Mentions: 1
Published: about 7 years ago

10.1002/ece3.78

Early stages of divergence: phylogeography, climate modeling, and morphological differentiation in the South American lizard<i>Liolaemus petrophilus</i>(Squamata: Liolaemidae)
Cited by: 29
Author(s): Frank M. Fontanella, Natalia Feltrin, Luciano Javier Ávila, Jack W. Sites, Mariana Morando
Software Mentions: 1
Published: over 12 years ago

10.1186/s12199-021-00950-4

Students’ attitude and sleep pattern during school closure following COVID-19 pandemic quarantine: a web-based survey in south of Iran
Cited by: 38
Author(s): Keivan Ranjbar, Hamidreza Hosseinpour, Reza Shahriarirad, Haleh Ghaem, Khoubyar Jafari, Tayebeh Rahimi, Alireza Mirahmadizadeh, Parisa Hosseinpour
Software Mentions: 1
Published: over 3 years ago

10.1007/s00249-021-01543-3

Probing the oligomeric re-assembling of bacterial fimbriae in vitro: a small-angle X-ray scattering and analytical ultracentrifugation study
Cited by: 3
Author(s): Alexandra S. Solovyova, Daniel T. Peters, Gema Durá, Helen Waller, Jeremy H. Lakey, David A. Fulton
Software Mentions: 1
Published: over 3 years ago

10.1155/2015/259814

Yoga May Mitigate Decreases in High School Grades
Cited by: 23
Author(s): Bethany Butzer, Max Van Over, Jessica J. Taylor, Sat Bir S. Khalsa
Software Mentions: 1
Published: almost 10 years ago

10.1111/eva.13080

Rapid morphological change in multiple cichlid ecotypes following the damming of a major clearwater river in Brazil
Cited by: 11
Author(s): Michelle C Gilbert, Alberto Akama, Cristina Cox Fernandes, R. Craig Albertson
Software Mentions: 1
Published: about 4 years ago

10.3390/foods10071473

Developing a Descriptive Sensory Characterization of Flour Tortilla Applying Flash Profile
Cited by: 8
Author(s): Sanjuana Rodríguez-Noriega, José Juan Buenrostro-Figueroa, Óscar Noé Rebolloso-Padilla, José Corona-Flores, Neymar Camposeco Montejo, Antonio Flores Naveda, Xochitl Rúelas-Chácon
Software Mentions: 1
Published: over 3 years ago

10.3390/foods10051116

High Heat Treatment of Goat Cheese Milk. The Effect on Sensory Profile, Consumer Acceptance and Microstructure of Cheese
Cited by: 1
Author(s): Zorana Miloradović, Nikola Tomić, Nemanja Kljajevic, Steva Lević, Vladimir Pavlović, Marijana Blažić, Jelena Miočinović
Software Mentions: 1
Published: over 3 years ago

10.3390/foods10061424

The Sensory Space of Wines: From Concept to Evaluation and Description. A Review
Cited by: 10
Author(s): Jean‐Christophe Barbe, Justine Garbay, Sophie Tempère
Software Mentions: 1
Published: over 3 years ago

10.3390/foods10081824

Physicochemical Composition and Sensory Quality of Goat Meat Burgers. Effect of Fat Source
Cited by: 12
Author(s): Alfredo Teixeira, Iasmin Ferreira, Ermelinda Pereira, Lia Vasconcelos, Ana Leite, Sandra Rodrigues
Software Mentions: 1
Published: over 3 years ago

10.1080/20961790.2017.1338041

Analysis of size and shape differences between ancient and present-day Italian crania using metrics and geometric morphometrics based on multislice computed tomography
Cited by: 0
Author(s): Fabrice Dédouit, Giuseppe Guglielmi, Astrid Olier, F. Savall, Michelangelo Nasuto, Theodorus Thanassoulas, Roberto Grassi, Alfonso Reginelli, Salvatore Cappabianca, Norbert Telmon
Software Mentions: 1
Published: over 7 years ago

10.3389/fbioe.2019.00358

Normalization Methods for the Analysis of Unbalanced Transcriptome Data: A Review
Cited by: 67
Author(s): Xueyan Liu, Nan Li, Sheng Liu, Jun Wang, Ning Zhang, Xubin Zheng, Kwong‐Sak Leung, Lixin Cheng
Software Mentions: 1
Published: about 5 years ago

10.3389/fbioe.2016.00084

Validation of a Cochlear Implant Patient-Specific Model of the Voltage Distribution in a Clinical Setting
Cited by: 27
Author(s): Waldo Nogueira, Daniel Schurzig, Andreas Büchner, Richard T. Penninger, Waldemar Würfel
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2020.592461

Improved Detection of Potentially Pleiotropic Genes in Coronary Artery Disease and Chronic Kidney Disease Using GWAS Summary Statistics
Cited by: 3
Author(s): Haimiao Chen, Ting Wang, Jinna Yang, Shuiping Huang, Ping Zeng
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2015.00229

Implications of pleiotropy: challenges and opportunities for mining Big Data in biomedicine
Cited by: 32
Author(s): Can Yang, Cong Liu, Qian Wang, Dongjun Chung, Hongyu Zhao
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2015.00052

Utilization of farm animal genetic resources in a changing agro-ecological environment in the Nordic countries
Cited by: 34
Author(s): Juha Kantanen, Peter Løvendahl, E. Strandberg, Emma Eythórsdóttir, Menghua Li, Anne Kettunen-Præbel, Peer Berg, Theo H. E. Meuwissen
Software Mentions: 1
Published: almost 10 years ago

10.3389/fgene.2018.00554

Spatially Dense 3D Facial Heritability and Modules of Co-heritability in a Father-Offspring Design
Cited by: 10
Author(s): Hanne Hoskens, Jiarui Li, Karlijne Indencleef, Dorothy Gors, Maarten Larmuseau, Stephen Richmond, Alexei I. Zhurov, Greet Hens, Hilde Peeters, Peter Claes
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2020.00783

Effects of Multi-Generational Soft Diet Consumption on Mouse Craniofacial Morphology
Cited by: 10
Author(s): Mohamed Hassan, Harjot Kaler, Bin Zhang, Timothy C. Cox, Nathan M. Young, Andrew H. Jheon
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2017.00373

Digital Morphometrics of Two North American Grapevines (Vitis: Vitaceae) Quantifies Leaf Variation between Species, within Species, and among Individuals
Cited by: 45
Author(s): Laura L. Klein, Madeleine Caito, Chad Chapnick, Cassandra Kitchen, Regan O’Hanlon, Daniel H. Chitwood, Allison J. Miller
Software Mentions: 1
Published: over 7 years ago

10.1186/1742-9994-6-2

Functional morphology and integration of corvid skulls - a 3D geometric morphometric approach
Cited by: 73
Author(s): Christoph Kulemeyer, Kolja Asbahr, Philipp Gunz, Sylke Frahnert, Franz Bairlein
Software Mentions: 1
Published: almost 16 years ago

10.1534/g3.116.027326

Several Critical Cell Types, Tissues, and Pathways Are Implicated in Genome-Wide Association Studies for Systemic Lupus Erythematosus
Cited by: 10
Author(s): Lu Liu, Xianyong Yin, Leilei Wen, Chao Yang, Yujun Sheng, Yan Lin, Zhengwei Zhu, Changbing Shen, Yinjuan Shi, Yinhe Zheng, Sen Yang, Xuejun Zhang, Yong Cui
Software Mentions: 1
Published: over 8 years ago

10.3390/genes10030210

Micromanagement of Developmental and Stress-Induced Senescence: The Emerging Role of MicroRNAs
Cited by: 5
Author(s): Aleksandra Świda-Barteczka, Zofia Szweykowska-Kulińska
Software Mentions: 1
Published: over 5 years ago

10.1016/j.gpb.2018.12.005

GPA: A Microbial Genetic Polymorphisms Assignments Tool in Metagenomic Analysis by Bayesian Estimation
Cited by: 6
Author(s): Jiarui Li, Pengcheng Du, Adam Yongxin Ye, Yuanyuan Zhang, Chuan Song, Hui Zeng, Chen Chen
Software Mentions: 1
Published: almost 6 years ago

10.1093/gigascience/giz155

3D revelation of phenotypic variation, evolutionary allometry, and ancestral states of corolla shape: a case study of clade Corytholoma (subtribe Ligeriinae, family Gesneriaceae)
Cited by: 6
Author(s): Hao-Chun Hsu, Wen-Chieh Chou, Yan-Fu Kuo
Software Mentions: 1
Published: almost 5 years ago

10.1186/1748-5908-5-17

General practitioners' perceptions of the effectiveness of medical interventions: an exploration of underlying constructs
Cited by: 5
Author(s): Florian Vogt, David Armstrong, Theresa M. Marteau
Software Mentions: 1
Published: almost 15 years ago

10.4103/0301-4738.73694

The role of standard automated perimetry and newer functional methods for glaucoma diagnosis and follow-up
Cited by: 29
Author(s): Luciana M. Alencar, Felipe A. Medeiros
Software Mentions: 1
Published: almost 14 years ago

10.3390/insects8040115

Morphometric Modifications in Canthon quinquemaculatus Castelnau 1840 (Coleoptera: Scarabaeinae): Sublethal Effects of Transgenic Maize?
Cited by: 10
Author(s): Victor Michelon Alves, Malva Isabel Medina Hernández
Software Mentions: 1
Published: about 7 years ago

10.1155/2018/8605021

Comparative Glycopeptide Analysis for Protein Glycosylation by Liquid Chromatography and Tandem Mass Spectrometry: Variation in Glycosylation Patterns of Site-Directed Mutagenized Glycoprotein
Cited by: 1
Author(s): Young Hye Hahm, Sung‐Ho Hahm, Hyoun Young Jo, Yeong Hee Ahn
Software Mentions: 1
Published: over 6 years ago

10.1002/acm2.12995

Deep learning‐based survival analysis for brain metastasis patients with the national cancer database
Cited by: 17
Author(s): Noah Bice, Neil Kirby, Tyler Bahr, Karl Rasmussen, Daniel Sáenz, Timothy D. Wagner, Niko Papanikolaou, Mohamad Fakhreddine
Software Mentions: 1
Published: over 4 years ago

10.1186/1748-717X-4-10

Prognostic indices for brain metastases – usefulness and challenges
Cited by: 91
Author(s): Carsten Nieder, Minesh P. Mehta
Software Mentions: 1
Published: almost 16 years ago

Projects: bioconductor: GPA

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