Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DeMixT

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DeMixT

Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
1 version
Latest release: 12 months ago
6,377 downloads total

Papers Mentioning DeMixT 5

10.3389/fonc.2020.555632

Comprehensive Characterization of Alternative mRNA Splicing Events in Glioblastoma: Implications for Prognosis, Molecular Subtypes, and Immune Microenvironment Remodeling
Cited by: 8
Author(s): Liang Zhao, Jiayue Zhang, Zhiyuan Liu, Yu Wang, Shurui Xuan, Peng Zhao
Software Mentions: 16
Published: over 3 years ago

10.1038/s42003-020-0989-y

IDO1+ Paneth cells promote immune escape of colorectal cancer
Cited by: 22
Author(s): Sandra Pflügler, Jasmin Svinka, Irene Scharf, Ilija Crnčec, Martin Filipits, Pornpimol Charoentong, Markus Tschurtschenthaler, Lukas Kenner, Monira Awad, Judith Stift, Marina Schernthanner, Romana Bischl, Dietmar Herndler‐Brandstetter, Elisabeth Glitzner, Herwig P. Moll, Emilio Casanova, Gerald Timelthaler, Maria Sibilia, Michael Gnant, Sigurd Lax, Josef Thaler, Mathias Müller, Birgit Strobl, Thomas Mohr, Arthur Kaser, Zlatko Trajanoski, Gerwin Heller, Robert Eferl
Software Mentions: 5
Published: over 4 years ago

10.1186/s13073-020-0720-0

A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles
Cited by: 30
Author(s): Li Wang, Robert Sebra, John P. Sfakianos, Kimaada Allette, Wenhui Wang, Seungyeul Yoo, Nina Bhardwaj, Eric E. Schadt, Xin Yao, Matthew D. Galsky, Jun Zhu
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1008452

Deconvolution of heterogeneous tumor samples using partial reference signals
Cited by: 4
Author(s): Yufang Qin, Weiwei Zhang, Xiaoqiang Sun, Siwei Nan, Nana Wei, Hua‐Jun Wu, Xiaoqi Zheng
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-62330-2

Semi-CAM: A semi-supervised deconvolution method for bulk transcriptomic data with partial marker gene information
Cited by: 3
Author(s): Dong Li, Avinash Kollipara, Toni Darville, Fei Zou, Xiaojing Zheng
Software Mentions: 2
Published: over 4 years ago