Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: DeMixT
https://packages.ecosyste.ms/registries/bioconductor.org/packages/DeMixT
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
1 version
Latest release: about 1 year ago
6,377 downloads total
Papers Mentioning DeMixT 5
10.3389/fonc.2020.555632
Comprehensive Characterization of Alternative mRNA Splicing Events in Glioblastoma: Implications for Prognosis, Molecular Subtypes, and Immune Microenvironment RemodelingCited by: 8
Author(s): Liang Zhao, Jiayue Zhang, Zhiyuan Liu, Yu Wang, Shurui Xuan, Peng Zhao
Software Mentions: 16
Published: almost 4 years ago
10.1038/s42003-020-0989-y
IDO1+ Paneth cells promote immune escape of colorectal cancerCited by: 22
Author(s): Sandra Pflügler, Jasmin Svinka, Irene Scharf, Ilija Crnčec, Martin Filipits, Pornpimol Charoentong, Markus Tschurtschenthaler, Lukas Kenner, Monira Awad, Judith Stift, Marina Schernthanner, Romana Bischl, Dietmar Herndler‐Brandstetter, Elisabeth Glitzner, Herwig P. Moll, Emilio Casanova, Gerald Timelthaler, Maria Sibilia, Michael Gnant, Sigurd Lax, Josef Thaler, Mathias Müller, Birgit Strobl, Thomas Mohr, Arthur Kaser, Zlatko Trajanoski, Gerwin Heller, Robert Eferl
Software Mentions: 5
Published: over 4 years ago
10.1186/s13073-020-0720-0
A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profilesCited by: 30
Author(s): Li Wang, Robert Sebra, John P. Sfakianos, Kimaada Allette, Wenhui Wang, Seungyeul Yoo, Nina Bhardwaj, Eric E. Schadt, Xin Yao, Matthew D. Galsky, Jun Zhu
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pcbi.1008452
Deconvolution of heterogeneous tumor samples using partial reference signalsCited by: 4
Author(s): Yufang Qin, Weiwei Zhang, Xiaoqiang Sun, Siwei Nan, Nana Wei, Hua‐Jun Wu, Xiaoqi Zheng
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-62330-2
Semi-CAM: A semi-supervised deconvolution method for bulk transcriptomic data with partial marker gene informationCited by: 3
Author(s): Dong Li, Avinash Kollipara, Toni Darville, Fei Zou, Xiaojing Zheng
Software Mentions: 2
Published: over 4 years ago