Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: CARNIVAL
https://packages.ecosyste.ms/registries/bioconductor.org/packages/CARNIVAL
A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
1 version
Latest release: 10 months ago
2 dependent packages
6,929 downloads total
Papers Mentioning CARNIVAL 7
10.1186/s12859-021-04268-4
A comprehensive database for integrated analysis of omics data in autoimmune diseasesCited by: 10
Author(s): Jordi Martorell-Marugán, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Guillermo Barturen, Adoración Martín-Gómez, Kevin Troulé, Gonzalo Gómez‐López, Fátima Al‐Shahrour, Víctor González‐Rumayor, María Peña‐Chilet, Joaquín Dopazo, Julio Sáez-Rodríguez, Marta E. Alarcón‐Riquelme, Pedro Carmona-Sáez
Software Mentions: 13
Published: about 3 years ago
10.15252/msb.20209923
Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysisCited by: 122
Author(s): Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio-Escat, Michal Klein, Olga Ivanova, Márton Ölbei, Attila Gábor, Fabian J. Theis, Dezső Módos, Tamás Korcsmáros, Julio Sáez-Rodríguez
Software Mentions: 10
Published: over 3 years ago
10.1093/bib/bbaa390
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modelingCited by: 13
Author(s): Vasundra Touré, Åsmund Flobak, Anna Niarakis, Steven Vercruysse, Martin Kuiper
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pcbi.1008685
ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathwaysCited by: 9
Author(s): Agatha Treveil, Balázs Bohár, Padhmanand Sudhakar, Lejla Gul, Luca Csabai, Márton Ölbei, Martina Poletti, Matthew Madgwick, Tahila Andrighetti, Isabelle Hautefort, Dezső Módos, Tamás Korcsmáros
Software Mentions: 6
Published: over 3 years ago
10.15252/msb.20209730
Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypothesesCited by: 63
Author(s): Aurélien Dugourd, Christoph Kuppe, Marco Sciacovelli, Enio Gjerga, Attila Gábor, Kristina B. Emdal, Vítor Vieira, Dorte B. Bekker-Jensen, Jennifer Kranz, Eric Bindels, Ana S.H. Costa, Abel Sousa, Pedro Beltrão, Miguel Rocha, Jesper V. Olsen, Christian Frezza, Rafael Kramann, Julio Sáez-Rodríguez
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0021296
SMA CARNI-VAL TRIAL PART II: A Prospective, Single-Armed Trial of L-Carnitine and Valproic Acid in Ambulatory Children with Spinal Muscular AtrophyCited by: 103
Author(s): John T. Kissel, Charles Scott, Sandra P. Reyna, Thomas O. Crawford, Louise R. Simard, Kristin J. Krosschell, Gyula Acsádi, Bakri Elsheik, Mary K. Schroth, Guy D’Anjou, Bernie LaSalle, Thomas W. Prior, Susan Sorenson, Jo Anne Maczulski, Mark B. Bromberg, Gary M. Chan, Kathryn J. Swoboda
Software Mentions: 1
Published: about 13 years ago
10.15252/emmm.201911021
Dysregulated mesenchymal PDGFR‐β drives kidney fibrosisCited by: 34
Author(s): Eva Miriam Buhl, Sonja Djudjaj, Barbara M. Klinkhammer, Katja Ermert, Victor G. Puelles, Maja T. Lindenmeyer, Clemens D. Cohen, Chaoyong He, Erawan Borkham-Kamphorst, Ralf Weiskirchen, Bernd Denecke, Panuwat Trairatphisan, Julio Sáez-Rodríguez, Tobias B. Huber, Lorin E. Olson, Jürgen Floege, Peter Boor
Software Mentions: 1
Published: over 4 years ago