Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1008685

https://doi.org/10.1371/journal.pcbi.1008685

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

Cited by: 9
Author(s): Agatha Treveil, Balázs Bohár, Padhmanand Sudhakar, Lejla Gul, Luca Csabai, Márton Ölbei, Martina Poletti, Matthew Madgwick, Tahila Andrighetti, Isabelle Hautefort, Dezső Módos, Tamás Korcsmáros
Published: over 3 years ago

Software Mentions 6

bioconductor: CARNIVAL
A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
Papers that mentioned: 7
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: RCy3
Functions to Access and Control Cytoscape
Papers that mentioned: 22
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555