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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.15252/msb.20209923

https://doi.org/10.15252/msb.20209923

Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

Cited by: 122
Author(s): Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio-Escat, Michal Klein, Olga Ivanova, Márton Ölbei, Attila Gábor, Fabian J. Theis, Dezső Módos, Tamás Korcsmáros, Julio Sáez-Rodríguez
Published: over 4 years ago

Software Mentions 10

bioconductor: CARNIVAL
A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
Papers that mentioned: 7
Very Likely Science (100)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
Very Likely Science (100)
bioconductor: OmnipathR
OmniPath web service client and more
Papers that mentioned: 3
Likely Science (40)
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
Very Likely Science (100)
pypi: cell2cell
TBD
Papers that mentioned: 1
Very Likely Science (80)
pypi: CellPhoneDB
Inferring cell-cell communication.
Papers that mentioned: 89
Very Likely Science (100)
pypi: omnipath
Python client for the OmniPath web service
Papers that mentioned: 1
Very Likely Science (100)
pypi: Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.
Papers that mentioned: 827
Very Likely Science (75)
pypi: pypath
Minimalistic replacement for py.path.local
Papers that mentioned: 5
Very Likely Science (65)