10.7554/eLife.48063

Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism
Cited by: 44
Author(s): Guillaume Witz, Erik van Nimwegen, Thomas Julou
Software Mentions: 6
Published: over 6 years ago

10.3390/s18020539

A COTS-Based Portable System to Conduct Accurate Substance Concentration Measurements
Cited by: 9
Author(s): Juan Aznar-Poveda, José Antonio López-Pastor, Toribio F. Otero
Software Mentions: 6
Published: over 8 years ago

10.3390/md17020081

Predicting Blood–Brain Barrier Permeability of Marine-Derived Kinase Inhibitors Using Ensemble Classifiers Reveals Potential Hits for Neurodegenerative Disorders
Cited by: 28
Author(s): Fabien Plisson, Andrew M. Piggott
Software Mentions: 6
Published: over 7 years ago

10.3390/molecules25112615

The Study on the hERG Blocker Prediction Using Chemical Fingerprint Analysis
Cited by: 21
Author(s): Kwang-Eun Choi, Anand Balupuri, Nam Sook Kang
Software Mentions: 6
Published: about 6 years ago

10.2196/17986

The Impact of Reducing the Number of Wearable Devices on Measuring Gait in Parkinson Disease: Noninterventional Exploratory Study
Cited by: 10
Author(s): Matthew Czech, Charmaine Demanuele, Michael Kelley Erb, Vesper Ramos, Hao Zhang, Bryan Ho, Shyamal Patel
Software Mentions: 6
Published: over 5 years ago

10.1093/ve/vew029

Reconstructing contact network parameters from viral phylogenies
Cited by: 11
Author(s): Rosemary M. McCloskey, Richard Liang, Art F. Y. Poon
Software Mentions: 6
Published: about 10 years ago

10.1186/s12967-021-03078-9

Low CCL19 expression is associated with adverse clinical outcomes for follicular lymphoma patients treated with chemoimmunotherapy
Cited by: 1
Author(s): Yu Zhou, Shasha Wang, Yunxia Tao, Haizhu Chen, Yan Qin, Xiaohong He, Shengyu Zhou, Peng Liu, Jianliang Yang, Sheng Yang, Lin Gui, Ning Lou, Zhishang Zhang, Jiarui Yao, Xiaohong Han, Yuankai Shi
Software Mentions: 6
Published: almost 5 years ago

10.1093/iob/obab014

Constraints on the Ecomorphological Convergence of Zooplanktivorous Butterflyfishes
Cited by: 1
Author(s): Jennifer R. Hodge, Young Sun Song, Molly Wightman, Alexandra Milkey, Binh Q. Tran, A Štajner, Alexus S. Roberts, Christopher R. Hemingson, Peter C. Wainwright, Samantha A. Price
Software Mentions: 6
Published: over 5 years ago

10.18632/oncotarget.10962

Epigenetic reprogramming and aberrant expression of PRAME are associated with increased metastatic risk in Class 1 and Class 2 uveal melanomas
Cited by: 85
Author(s): Matthew G. Field, Michael A. Durante, Christina L. Decatur, Berçin Tarlan, Kristen M. Oelschlager, John F. Stone, Jeffim N. Kuznetsov, Anne M. Bowcock, Stefan Kurtenbach, J. William Harbour
Software Mentions: 6
Published: almost 10 years ago

10.1002/evl3.156

Sex differences in age-to-maturation relate to sexual selection and adult sex ratios in birds
Cited by: 16
Author(s): Sergio Ancona, András Liker, Mariá Cristina Carmona-Isunza, Tamás Székely
Software Mentions: 6
Published: over 6 years ago

10.1111/jcmm.14999

A stroma‐related lncRNA panel for predicting recurrence and adjuvant chemotherapy benefit in patients with early‐stage colon cancer
Cited by: 13
Author(s): Rui Zhou, Huiying Sun, Songbai Zheng, Jingwen Zhang, Dongqiang Zeng, Jianhua Wu, Zhenhua Huang, Xiaoxiang Rong, Jianping Bin, Yulin Liao, Min Shi, Wangjun Liao
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pgen.1007633

Glycine promotes longevity in Caenorhabditis elegans in a methionine cycle-dependent fashion
Cited by: 45
Author(s): Yasmine J. Liu, Georges E. Janssens, Rebecca L. McIntyre, Marte Molenaars, Rashmi Kamble, Arwen W. Gao, Aldo Jongejan, Michel van Weeghel, Alyson W. MacInnes, Riekelt H. Houtkooper
Software Mentions: 6
Published: over 7 years ago

10.1186/s13321-021-00536-w

Learning protein-ligand binding affinity with atomic environment vectors
Cited by: 21
Author(s): Rocco Meli, Andrew Anighoro, Michael J. Bodkin, Garrett M. Morris, Philip C. Biggin
Software Mentions: 6
Published: almost 5 years ago

10.1002/evl3.80

Lineages evolved under stronger sexual selection show superior ability to invade conspecific competitor populations
Cited by: 10
Author(s): Joanne L. Godwin, Lewis G. Spurgin, Łukasz Michalczyk, Oliver Y. Martin, Alyson J. Lumley, Tracey Chapman, Matthew J. G. Gage
Software Mentions: 6
Published: almost 8 years ago

10.3390/cancers13081817

USP22 Suppresses SPARC Expression in Acute Colitis and Inflammation-Associated Colorectal Cancer
Cited by: 8
Author(s): Robyn Laura Kosinsky, Dominik Saul, Christoph Ammer‐Herrmenau, William A. Faubion, Albrecht Neeße, Steven A. Johnsen
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0210467

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
Cited by: 0
Author(s): Katerina Taškova, Jean-Fred Fontaine, Ralf Mrowka, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-017-01981-0

Floccular fossa size is not a reliable proxy of ecology and behaviour in vertebrates
Cited by: 43
Author(s): Sérgio Ferreira-Cardoso, Ricardo Araújo, Nelson Martins, Gabriel G. Martins, Stig Walsh, R. M. S. Martins, Nikolay Kardjilov, Ingo Manke, André Hilger, Rui Castanhinha
Software Mentions: 6
Published: about 9 years ago

10.3390/healthcare9030317

Automatic Evaluation of Heart Condition According to the Sounds Emitted and Implementing Six Classification Methods
Cited by: 5
Author(s): Manuel A. Soto-Murillo, Jorge I. Galván-Tejada, Carlos E. Galván-Tejada, José M. Celaya-Padilla, Huizilopoztli Luna-García, Rafael Magallanes‐Quintanar, Tania A. Gutiérrez-García, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2015.01013

Evolutionary history influences the salinity preference of bacterial taxa in wetland soils
Cited by: 65
Author(s): Ember M. Morrissey, Rima B. Franklin
Software Mentions: 6
Published: almost 11 years ago

10.1155/2017/6083072

An Update on Statistical Boosting in Biomedicine
Cited by: 24
Author(s): Andreas Mayr, Benjamin Hofner, Elisabeth Waldmann, Tobias Hepp, Sebastian Meyer, Olaf Gefeller
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0060045

The Structure of a Gene Co-Expression Network Reveals Biological Functions Underlying eQTLs
Cited by: 37
Author(s): Nathalie Villa-Vialaneix, Laurence Liaubet, Thibault Laurent, Pierre Chérel, Adrien Gamot, Magali SanCristobal
Software Mentions: 6
Published: over 13 years ago

10.7150/thno.58433

Single-cell transcriptomic profiling provides insights into the toxic effects of Zearalenone exposure on primordial follicle assembly
Cited by: 20
Author(s): Yu Tian, Mingyu Zhang, Ai-Hong Zhao, Li Kong, Junjie Wang, Wei Shen, Lan Li
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-95648-6

Four consecutive yearly point-prevalence studies in Wales indicate lack of improvement in sepsis care on the wards
Cited by: 1
Author(s): Maja Kopczynska, Harry Unwin, Richard Pugh, Ben Sharif, Thomas Chandy, Daniel Davies, Matthew E. Shield, David Purchase, Samuel C. Tilley, Arwel T Poacher, Lewis Oliva, Sam Willis, Isabelle Ray, John Ng C. Hui, Bethany Payne, Eilis Frances Wardle, Fiona Andrew, Hei Man Priscilla Chan, Jack Barrington, Jay Hale, Joanna Hawkins, Jess K. Nicholas, Lara E. Wirt, Lowri Hughes Thomas, Megan Walker, Myat P. Pan, Tallulah Ray, Umair Asim, Victoria Maidman, Zeid Atiyah, Zain M. Nasser, Zhao Xuan Tan, Laura Tan, Tamás Szakmány
Software Mentions: 6
Published: almost 5 years ago

10.3389/fcell.2021.562908

FOntCell: Fusion of Ontologies of Cells
Cited by: 0
Author(s): Javier Cabau-Laporta, Alex M. Ascensión, Mikel Arrospide-Elgarresta, Daniela Gerovska, Marcos J. Araúzo‐Bravo
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-017-10930-w

Human hepatic gene expression signature of non-alcoholic fatty liver disease progression, a meta-analysis
Cited by: 69
Author(s): Maria Ryaboshapkina, Mårten Hammar
Software Mentions: 6
Published: almost 9 years ago

10.1186/s13059-020-1949-z

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
Cited by: 173
Author(s): Christian H. Holland, Jovan Tanevski, Javier Perales-Patón, Jan Gleixner, Manu P. Kumar, Elisabetta Mereu, Brian A. Joughin, Oliver Stegle, Douglas A. Lauffenburger, Holger Heyn, Bence Szalai, Julio Sáez-Rodríguez
Software Mentions: 6
Published: over 6 years ago

10.7554/eLife.61405

Cohesin mutations are synthetic lethal with stimulation of WNT signaling
Cited by: 17
Author(s): Chue Vin Chin, Jisha Antony, Sarada Ketharnathan, Anastasia Labudina, Grégory Gimenez, Kate M Parsons, Jin-Shu He, Amee J. George, Maria Michela Pallotta, Antonio Musio, Antony W. Braithwaite, Parry Guilford, Ross D. Hannan, Julia A. Horsfield
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0198539

Pink shrimp Farfantepenaeus duorarum spatiotemporal abundance trends along an urban, subtropical shoreline slated for restoration
Cited by: 4
Author(s): Ian C. Zink, Joan A. Browder, Diego Lirman, Joseph E. Serafy
Software Mentions: 6
Published: over 7 years ago

10.1186/s13029-015-0042-6

PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols
Cited by: 3
Author(s): Alexandros Kanterakis, Joël Kuiper, George Potamias, Morris A. Swertz
Software Mentions: 6
Published: over 10 years ago

10.1038/s41598-021-91382-1

RUNX1 and REXO2 are associated with the heterogeneity and prognosis of IDH wild type lower grade glioma
Cited by: 11
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 6
Published: about 5 years ago

10.1128/mBio.00170-21

Viral Rebound Kinetics Correlate with Distinct HIV Antibody Features
Cited by: 7
Author(s): Yannic C. Bartsch, Carolin Loos, Evan Rossignol, Jesse Fajnzylber, Dansu Yuan, Anchalee Avihingsanon, Sasiwimol Ubolyam, Thidarat Jupimai, Bernard Hirschel, Jintanat Ananworanich, Douglas A. Lauffenburger, Jonathan Z. Li, Galit Alter, Boris Jülg
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0019024

Functional Genomics Unique to Week 20 Post Wounding in the Deep Cone/Fat Dome of the Duroc/Yorkshire Porcine Model of Fibroproliferative Scarring
Cited by: 21
Author(s): Loren H. Engrav, Christopher K. Tuggle, Kathleen F. Kerr, Kehao Zhu, Surawej Numhom, Oliver Couture, Richard P. Beyer, Anne M. Hocking, Gretchen J. Carrougher, Maria Luiza Christóvão Ramos, Matthew B. Klein, Nicole S. Gibran
Software Mentions: 6
Published: about 15 years ago

10.1186/1471-2105-14-351

On the amyloid datasets used for training PAFIG ­ how (not) to extend the experimental dataset of hexapeptides
Cited by: 10
Author(s): Małgorzata Kotulska, Olgierd Unold
Software Mentions: 6
Published: over 12 years ago

10.21203/rs.3.rs-69657/v1

Immune transcriptomes of highly exposed SARS-CoV-2 asymptomatic seropositive versus seronegative individuals from the Ischgl community
Cited by: 0
Author(s): Hye Kyung Lee, Ludwig Knabl, Lisa Pipperger, André Volland, Priscilla A. Furth, Keunsoo Kang, Harold E. Smith, Romuald Bellmann, Christina Bernhard, Norbert Kaiser, Hannes Gänzer, Mathias Ströhle, Andreas Walser, Dorothee von Laer, Lothar Hennighausen
Software Mentions: 6
Published: almost 6 years ago

10.3390/ijerph17228329

Long-Term Effects of a Cognitive Behavioral Conference Call Intervention on Depression in Non-Professional Caregivers
Cited by: 4
Author(s): Lara López, Fernando Vázquez, Ángela Torres, Patricia Otero, Vanessa Blanco, Olga Dı́az, Mario Páramo
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0150705

Changes in the miRNA-mRNA Regulatory Network Precede Motor Symptoms in a Mouse Model of Multiple System Atrophy: Clinical Implications
Cited by: 26
Author(s): Simon Schafferer, Rimpi Khurana, Violetta Refolo, Serena Venezia, Edith Sturm, Paolo Piatti, Clara Hechenberger, Hubert Hackl, Roman Kessler, Michaela Willi, Ronald Gstir, Anne Krogsdam, Alexandra Lusser, Werner Poewe, Gregor K. Wenning, Alexander Hüttenhofer, Nadia Stefanova
Software Mentions: 6
Published: over 10 years ago

10.1128/AEM.01285-16

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis
Cited by: 46
Author(s): Sagar M. Utturkar, W. Nathan Cude, Michael S. Robeson, Zamin K. Yang, Dawn M. Klingeman, Miriam Land, S. L. Allman, Tse-Yuan S. Lu, Steven D. Brown, Christopher W. Schadt, Mircea Podar, Mitchel J. Doktycz, Dale A. Pelletier
Software Mentions: 6
Published: almost 10 years ago

10.1186/s13742-015-0060-y

VirAmp: a galaxy-based viral genome assembly pipeline
Cited by: 31
Author(s): Yinan Wan, Daniel W. Renner, István Albert, Moriah L. Szpara
Software Mentions: 6
Published: about 11 years ago

10.3390/nu12041042

Green Tea Polyphenol EGCG Attenuates MDSCs-mediated Immunosuppression through Canonical and Non-Canonical Pathways in a 4T1 Murine Breast Cancer Model
Cited by: 33
Author(s): Ping Xu, Feng Yan, Yuhai Zhao, Xiangbo Chen, Shili Sun, Yuefei Wang, Le Ying
Software Mentions: 6
Published: about 6 years ago

10.1098/rsos.160350

Two species of Southeast Asian cats in the genus <i>Catopuma</i> with diverging histories: an island endemic forest specialist and a widespread habitat generalist
Cited by: 13
Author(s): Riddhi P. Patel, Daniel W. Förster, Andrew C. Kitchener, Mark D. Rayan, Shariff W. Mohamed, Laura Werner, Dorina Lenz, Hans Pfestorf, Stephanie Kramer‐Schadt, Viktoriia Radchuk, Jörns Fickel, Andreas Wilting
Software Mentions: 6
Published: almost 10 years ago

10.1038/s41598-021-93468-2

Integrative biology defines novel biomarkers of resistance to strongylid infection in horses
Cited by: 5
Author(s): Guillaume Sallé, Cécile Canlet, Jacques Cortet, Christine Koch, Joshua Malsa, Fabrice Reigner, Mickaël Riou, Noémie Perrot, Alexandra Blanchard, Núria Mach
Software Mentions: 6
Published: almost 5 years ago

10.7717/peerj.8844

Dynamics of ammonia oxidizers and denitrifiers in response to compost addition in black soil, Northeast China
Cited by: 8
Author(s): Zhihui Yang, Yupeng Guan, Ayodeji Bello, Yanxiang Wu, Jiayi Ding, Leiqi Wang, Yuqing Ren, Guangxin Chen, Wei Yang
Software Mentions: 6
Published: about 6 years ago

10.1186/s40478-019-0681-y

A simplified approach using Taqman low-density array for medulloblastoma subgrouping
Cited by: 17
Author(s): Gustavo Alencastro Veiga Cruzeiro, Karina Bezerra Salomão, Carlos Alberto Oliveira de Biagi, Martin Baumgärtner, Dominik Sturm, Régia Caroline Peixoto Lira, Taciani de Almeida Magalhães, Mirella Baroni, Vanessa da Silva Silveira, Fabiano Pinto Saggioro, Ricardo Santos de Oliveira, Paulo Henrique dos Santos Klinger, Ana Luíza Seidinger, José Andrés Yunes, Rosane Gomes de Paula Queiróz, Sueli Mieko Oba-Shinjo, Carlos Alberto Scrideli, Suely Kazue Nagahashi Marie, Luíz Gonzaga Tone, Elvis Terci Valera
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-018-21530-7

Georeferenced soil provenancing with digital signatures
Cited by: 12
Author(s): Matthew Tighe, Nicola Forster, Christopher N. Guppy, Devin Savage, Peter Grave, Iain M. Young
Software Mentions: 6
Published: over 8 years ago

10.1140/epjc/s10052-014-2981-5

QCD and strongly coupled gauge theories: challenges and perspectives
Cited by: 407
Author(s): Nora Brambilla, S. Eidelman, P. Foka, Susan Gardner, A. S. Kronfeld, Mark Alford, Reinhard Alkofer, Mathias Butenschoen, Thomas D. Cohen, Johanna Erdmenger, L. Fabbietti, M. Faber, J. L. Goity, B. Ketzer, Huey‐Wen Lin, Felipe J. Llanes-Estrada, Harvey B. Meyer, P. Pakhlov, Elisabetta Pallante, M. I. Polikarpov, H. Sazdjian, Andreas Schmitt, W. M. Snow, Antonio Vairo, R. Vogt, Aleksi Vuorinen, Hartmut Wittig, Peter Arnold, P. Christakoglou, P. Di Nezza, Z. Fodor, Xavier Garcia i Tormo, Roman Höllwieser, M. A. Janik, A. Kalweit, D. Keane, Elias Kiritsis, A. Mischke, R. Mizuk, G. Odyniec, Kyriakos Papadodimas, Antonio Pich, R. Pittau, Jian Qiu, Giulia Ricciardi, Carlos A. Salgado, Kai Schwenzer, N. G. Stefanis, Georg von Hippel, В. И. Захаров
Software Mentions: 6
Published: almost 12 years ago

10.1002/ece3.6182

Isotopic niche differs between seal and fish‐eating killer whales ( <i>Orcinus orca</i> ) in northern Norway
Cited by: 24
Author(s): Eve Jourdain, Clare Andvik, Richard Karoliussen, Anders Ruus, Dag Vongraven, Katrine Borgå
Software Mentions: 6
Published: about 6 years ago

10.1111/eva.12725

Long‐term evaluation of fitness and demographic effects of a Chinook Salmon supplementation program
Cited by: 34
Author(s): Ilana Janowitz‐Koch, Craig Rabe, Ryan Kinzer, Doug D. Nelson, Maureen A. Hess, Shawn R. Narum
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0052884

Wrangling Phosphoproteomic Data to Elucidate Cancer Signaling Pathways
Cited by: 17
Author(s): Mark L. Grimes, Wan-Jui Lee, Laurens van der Maaten, Paul Shannon
Software Mentions: 6
Published: over 13 years ago

10.1111/eva.12676

Genomic signatures of environmental selection despite near‐panmixia in summer flounder
Cited by: 32
Author(s): Jennifer A. Hoey, Malin L. Pinsky
Software Mentions: 6
Published: almost 8 years ago

10.1186/s12859-020-03707-y

A sparse Bayesian factor model for the construction of gene co-expression networks from single-cell RNA sequencing count data
Cited by: 11
Author(s): Michael Sekula, Jeremy Gaskins, Susmita Datta
Software Mentions: 6
Published: almost 6 years ago

10.1186/1758-2946-3-51

An investigation into pharmaceutically relevant mutagenicity data and the influence on Ames predictive potential
Cited by: 47
Author(s): Patrick McCarren, Clayton Springer, Lewis Whitehead
Software Mentions: 6
Published: over 14 years ago

10.1186/s12864-018-5266-9

Host microRNA analysis in cyprinid Herpesvirus-3 (CyHV-3) infected common carp
Cited by: 10
Author(s): M. Reichert, Anna Łukasik, Piotr Zielenkiewicz, Marek Matras, Joanna Maj‐Paluch, Magdalena Stachnik, Ewa Borzym
Software Mentions: 6
Published: over 7 years ago

10.3389/fcimb.2021.609160

Exogenous Coronavirus Interacts With Endogenous Retrotransposon in Human Cells
Cited by: 27
Author(s): Ying Yin, Xiaozhao Liu, Ximiao He, Li-Quan Zhou
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-018-37802-1

The transdiagnostic structure of mental effort avoidance
Cited by: 27
Author(s): Edward H. Patzelt, Wouter Kool, Alexander J. Millner, Samuel J. Gershman
Software Mentions: 6
Published: over 7 years ago

10.3389/fpls.2018.00836

Divergent Secondary Metabolites and Habitat Filtering Both Contribute to Tree Species Coexistence in the Peruvian Amazon
Cited by: 21
Author(s): Jason Vleminckx, Diego Salazar, Claire Fortunel, Italo Mesones, Nállarett Dávila, John Lokvam, Krista Beckley, Christopher Baraloto, Paul V. A. Fine
Software Mentions: 6
Published: about 8 years ago

10.1155/2013/203681

Time Series Expression Analyses Using RNA-seq: A Statistical Approach
Cited by: 23
Author(s): Sangwon Oh, Seongho Song, Gregory A. Grabowski, Hongyu Zhao, James P. Noonan
Software Mentions: 6
Published: over 13 years ago

10.1128/mBio.00971-19

Evolution of Superinfection Immunity in Cluster A Mycobacteriophages
Cited by: 48
Author(s): Travis N. Mavrich, Graham F. Hatfull
Software Mentions: 6
Published: about 7 years ago

10.1128/mBio.02495-18

The Transcriptional Cycle Is Suited to Daytime N ₂ Fixation in the Unicellular Cyanobacterium “ <i>Candidatus</i> Atelocyanobacterium thalassa” (UCYN-A)
Cited by: 28
Author(s): María del Carmen Muñoz-Marín, Irina N. Shilova, Tianshu Shi, Hanna Farnelid, Ana María Cabello, Jonathan P. Zehr
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0226501

pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage
Cited by: 11
Author(s): Serena Bonaretti, Garry E. Gold, Gary S. Beaupré
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-87296-7

Genomic prediction for growth using a low-density SNP panel in dromedary camels
Cited by: 9
Author(s): Morteza Bitaraf Sani, Javad Zare Harofte, Mohammad Hossein Banabazi, Saeid Esmaeilkhanian, Ali Naderi, Nader Salim, Abbas Teimoori, Ahmad Bitaraf, Mohammad Zadehrahmani, Pamela Anna Burger, V. Landi, Mohammad Silawi, Afsaneh Taghipour Sheshdeh, Mohammad Ali Faghihi
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1008414

Modelling thalamocortical circuitry shows that visually induced LTP changes laminar connectivity in human visual cortex
Cited by: 4
Author(s): Rachael L. Sumner, Meg J. Spriggs, Alexander D Shaw
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9010076

Vibrio Colonization Is Highly Dynamic in Early Microplastic-Associated Biofilms as Well as on Field-Collected Microplastics
Cited by: 44
Author(s): Katharina Kesy, Matthias Labrenz, Brittan S. Scales, Bernd Kreikemeyer, Sonja Oberbeckmann
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-017-3568-y

Conserved expression of transposon-derived non-coding transcripts in primate stem cells
Cited by: 41
Author(s): LeeAnn Ramsay, Maria C. Marchetto, Maxime Caron, Shu-Huang Chen, Stephan Busche, Tony Kwan, Tomi Pastinen, Fred H. Gage, Guillaume Bourque
Software Mentions: 6
Published: over 9 years ago

10.1089/cmb.2019.0320

Explainable Deep Learning for Augmentation of Small RNA Expression Profiles
Cited by: 8
Author(s): Jeļena Fiošina, Maksims Fiošins, Stefan Bonn
Software Mentions: 6
Published: over 6 years ago

10.1093/aobpla/plv082

Bud development and shoot morphology in relation to crown location
Cited by: 7
Author(s): Maarja Kukk, Anu Sôber
Software Mentions: 6
Published: over 11 years ago

10.1186/s10194-019-0987-y

Predicting treatment response using pharmacy register in migraine
Cited by: 6
Author(s): Thomas Folkmann Hansen, Mona Ameri Chalmer, Thilde Marie Haspang, Lisette J. A. Kogelman, Jes Olesen
Software Mentions: 6
Published: over 7 years ago

10.1155/2021/6693219

A Novel 8-Gene Prognostic Signature for Survival Prediction of Uveal Melanoma
Cited by: 3
Author(s): Zhongjun Tang, Kebo Cai
Software Mentions: 6
Published: almost 5 years ago

10.3390/biom9090396

Jumping on the Edge—First Evidence for a 2 × 6-meric Hemocyanin in Springtails
Cited by: 0
Author(s): Juliane Schmidt, Heinz Decker, Michael Thomas Marx
Software Mentions: 6
Published: almost 7 years ago

10.3389/fgene.2020.565626

A Near-Chromosome Level Genome Assembly of Anopheles stephensi
Cited by: 14
Author(s): Afiya Razia Chida, Samathmika Ravi, Suvratha Jayaprasad, Kiran Paul, Jaysmita Saha, Chinjusha Suresh, Saurabh Whadgar, Naveen Kumar, Raksha Rao K, Chaitali Ghosh, Bibha Choudhary, Suresh Subramani, Subhashini Srinivasan
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.6400

Drought mildly reduces plant dominance in a temperate prairie ecosystem across years
Cited by: 6
Author(s): Karen Castillioni, Kevin R. Wilcox, Lifen Jiang, Yiqi Luo, Chang Gyo Jung, Lara Souza
Software Mentions: 6
Published: about 6 years ago

10.1155/2018/8354350

Systematic Analysis of RNA Regulatory Network in Rat Brain after Ischemic Stroke
Cited by: 11
Author(s): Liu Juan, Kunshan Zhang, Bin Hu, Siguang Li, Qing Li, Yuan Luo, Yang Wang, Zhifeng Deng
Software Mentions: 6
Published: over 8 years ago

10.3390/genes11060655

Transcriptional Basis for Differential Thermosensitivity of Seedlings of Various Tomato Genotypes
Cited by: 5
Author(s): Yangjie Hu, Sotirios Fragkostefanakis, Enrico Schleiff, Stefan Simm
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0212866

Dynamic changes in lung responses after single and repeated exposures to cigarette smoke in mice
Cited by: 10
Author(s): Michelle Engle, Justine N. Monk, Corey M. Jania, Jessica R. Martin, John C. Gomez, Hong Dang, Joel S. Parker, Claire M. Doerschuk
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pbio.3000559

Human sperm displays rapid responses to diet
Cited by: 102
Author(s): Daniel Nätt, Unn Kugelberg, Eduard Casas, Elizabeth Nedstrand, Stefan Zalavary, Pontus Henriksson, Carola Nijm, Julia Jäderquist, Johanna Sandborg, Eva Flinke, Rashmi Ramesh, Lovisa Örkenby, Filip Appelkvist, Thomas Lingg, Nicola Guzzi, Cristian Bellodi, Marie Löf, Tanya Vavouri, Anita Öst
Software Mentions: 6
Published: over 6 years ago

10.3390/life11020115

A Meta-Analysis of the Effects of High-LET Ionizing Radiations in Human Gene Expression
Cited by: 6
Author(s): Theodora-Dafni Michalettou, Ioannis Michalopoulos, Sylvain V. Costes, Christine E. Hellweg, Megumi Hada, Alexandros G. Georgakilas
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-56074-x

Metagenomic analysis of dental calculus in ancient Egyptian baboons
Cited by: 20
Author(s): Claudio Ottoni, Meriam Guellil, Andrew T. Ozga, Anne C. Stone, Oliver Kersten, Barbara Bramanti, Stéphanie Porcier, Wim Van Neer
Software Mentions: 6
Published: over 6 years ago

10.1186/1471-2105-11-199

BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
Cited by: 21
Author(s): Franziska Hoffgaard, Philipp Weil, Kay Hamacher
Software Mentions: 6
Published: about 16 years ago

10.1038/s41598-021-87886-5

Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree
Cited by: 14
Author(s): Mónica Sebastiana, Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Filipa Monteiro, Andreia Figueiredo, Marisa Maia, Rui Nascimento, Marta Sousa Silva, António E. N. Ferreira, Carlos Cordeiro, A. Marques, Lisete Sousa, Rui Malhó, Josep Peñuelas
Software Mentions: 6
Published: about 5 years ago

10.1093/jxb/erx018

Genome-wide association study unravels the genetic control of the apple volatilome and its interplay with fruit texture
Cited by: 50
Author(s): Brian Farneti, Mario Di Guardo, Iuliia Khomenko, Luca Cappellin, Franco Biasioli, Riccardo Velasco, Fabrizio Costa
Software Mentions: 6
Published: over 9 years ago

10.1002/ece3.2150

Plant regeneration from seeds responds to phylogenetic relatedness and local adaptation in Mediterranean <i>Romulea</i> (Iridaceae) species
Cited by: 31
Author(s): Angelino Carta, Sarah Hanson, Jonas V. Müller
Software Mentions: 6
Published: about 10 years ago

10.7717/peerj.8548

Comprehensive analysis of long non-coding RNAs and mRNAs in skeletal muscle of diabetic Goto-Kakizaki rats during the early stage of type 2 diabetes
Cited by: 1
Author(s): Wenlu Zhang, Yunmeng Bai, Zixi Chen, Xingsong Li, Shuang Fu, Lizhen Huang, Shudai Lin, Hongli Du
Software Mentions: 6
Published: over 6 years ago

10.7554/eLife.57804

External location of touch is constructed post-hoc based on limb choice
Cited by: 16
Author(s): Femke Maij, Christian Seegelke, W. Pieter Medendorp, Tobias Heed
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.5361

Drivers and patterns of microbial community assembly in a Lyme disease vector
Cited by: 30
Author(s): Lisa I. Couper, Jessica Y. Kwan, Joyce Ma, Andrea Swei
Software Mentions: 6
Published: about 7 years ago

10.1016/j.dib.2020.106424

An exploratory assessment of a multidimensional healthcare and economic data on COVID-19 in Nigeria
Cited by: 7
Author(s): Ezekiel Ogundepo, Joseph Bamidele Awotunde, Olubayo Adekanmbi, Olalekan Akinsande, Oluwatobi Banjo, Emeka Ogbuju, Francisca Oladipo, Olawale Victor Abimbola, Ehizokhale Oseghale, Oluwatobi Babajide
Software Mentions: 6
Published: over 5 years ago

10.1101/2020.09.01.20185884

Immune transcriptomes of highly exposed SARS-CoV-2 asymptomatic seropositive versus seronegative individuals from the Ischgl community
Cited by: 0
Author(s): Hye Kyung Lee, Ludwig Knabl, Lisa Pipperger, André Volland, Priscilla A. Furth, Keunsoo Kang, Harold E. Smith, Romuald Bellmann, Christina Bernhard, Norbert Kaiser, Hannes Gänzer, Mathias Ströhle, Andreas Walser, Dorothee von Laer, Lothar Hennighausen
Software Mentions: 6
Published: almost 6 years ago

10.3390/jpm10040210

Association of UBE3C Variants with Reduced Kidney Function in Patients with Diabetic Kidney Disease
Cited by: 3
Author(s): Ying Chun Chen, Mei Yi Wu, Zhi Yu, Wan Hsuan Chou, Yi Ting Lai, Chih-Chin Kao, Imaniar Noor Faridah, Mai Szu Wu, Wei Chiao Chang
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0108010

LncRBase: An Enriched Resource for lncRNA Information
Cited by: 58
Author(s): Sohini Chakraborty, Aritra Deb, Ranjan Kumar Maji, Sudipto Saha, Zhumur Ghosh
Software Mentions: 6
Published: almost 12 years ago

10.1002/ece3.7967

Closely related parasitic plants have similar host requirements and related effects on hosts
Cited by: 4
Author(s): Diethart Matthies
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2017.00013

The Pancreatic Islet Regulome Browser
Cited by: 28
Author(s): Loris Mularoni, Mireia Ramos-Rodríguez, Lorenzo Pasquali
Software Mentions: 6
Published: over 9 years ago

10.1002/ece3.5202

Chemical defense of toad tadpoles under risk by four predator species
Cited by: 15
Author(s): Bálint Üveges, Márk Szederkényi, Katharina Mahr, Ágnes M. Móricz, Dániel Krüzselyi, Veronika Bókony, Herbert Hoi, Attila Hettyey
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2020.559035

Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and Antiviral Responses in Aedes albopictus
Cited by: 6
Author(s): Maria G Onyango, Geoffrey M. Attardo, Erin Taylor Kelly, Sean M. Bialosuknia, Jessica Stout, Elyse Banker, Lili Kuo, Alexander T. Ciota, Laura D. Kramer
Software Mentions: 6
Published: almost 6 years ago

10.3389/fpls.2021.656783

Evolution of Bird and Insect Flower Traits in Fritillaria L. (Liliaceae)
Cited by: 5
Author(s): Katarzyna Roguz, Laurence Hill, Agata Roguz, Marcin Zych
Software Mentions: 6
Published: over 5 years ago

10.3390/cells10040921

Sex-Biased lncRNA Signature in Fetal Growth Restriction (FGR)
Cited by: 2
Author(s): Aleksandra Lipka, J Jastrzebski, Łukasz Paukszto, Karol G Makowczenko, Elżbieta Łopieńska–Biernat, Marek Gowkielewicz, Ewa Lepiarczyk, Marta Wiszpolska, Mariusz Majewski, Marta Majewska
Software Mentions: 6
Published: about 5 years ago

10.3897/zookeys.603.8271

Taxonomic revision of the Malagasy Nesomyrmex madecassus species-group using a quantitative morphometric approach
Cited by: 4
Author(s): Sándor Csősz, Brian L. Fisher
Software Mentions: 6
Published: about 10 years ago

10.1016/j.cub.2018.09.026

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis
Cited by: 35
Author(s): Ignacio E. Schor, Giovanni Bussotti, Matilda Maleš, Mattia Forneris, Rebecca R. Viales, Anton J. Enright, Eileen E. M. Furlong
Software Mentions: 6
Published: over 7 years ago

10.1007/s10616-020-00384-w

Genome-wide expression profiling reveals increased stability and mitochondrial energy metabolism of the human liver cell line HepaRG-CAR
Cited by: 1
Author(s): Aziza A. A. Adam, Aldo Jongejan, Perry D. Moerland, Vincent A. van der Mark, Ronald P.J. Oude Elferink, R. A. F. M. Chamuleau, Ruurdtje Hoekstra
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-82429-4

Molecular characterization of atherosclerosis in HIV positive persons
Cited by: 5
Author(s): Adam Cornwell, Rohith Palli, Meera V. Singh, Lauren Benoodt, Alicia Tyrell, Jun Abe, Giovanni Schifitto, Sanjay B. Maggirwar, Juilee Thakar
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.7215

Beta diversity of aquatic macroinvertebrate assemblages associated with leaf patches in neotropical montane streams
Cited by: 10
Author(s): Marcos Callisto, Marden S. Linares, Walace P. Kiffer, Robert M. Hughes, Marcelo S. Moretti, Diego Rodrigues Macedo, Ricardo Solar
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.637023

CXCL5 Has Potential to Be a Marker for Hepatocellular Carcinoma Prognosis and Was Correlating With Immune Infiltrates
Cited by: 8
Author(s): Yuan Nie, Mei-chun Jiang, Cong Liu, Qi Liu, Xuan Zhu
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.580513

A Novel RNA Binding Protein-Related Prognostic Signature for Hepatocellular Carcinoma
Cited by: 25
Author(s): Yongbiao Huang, Sheng Chen, Qin Wan, Yali Wang, Long Li, Qianxia Li, Xianglin Yuan
Software Mentions: 6
Published: over 5 years ago