10.21203/rs.3.rs-80404/v1

Acute SARS-CoV-2 Infection is Highly Cytopathic, Elicits a Robust Innate Immune Response and is Efficiently Prevented by EIDD-2801
Cited by: 10
Author(s): Angela Wahl, Lisa E. Gralinski, Claire Johnson, Wenbo Yao, Martina Kovářová, Kenneth H. Dinnon, Hongwei Liu, Victoria J. Madden, Halina M. Krzystek, Chandrav De, Kristen White, Alexandra Schäfer, Tanzila Zaman, Sarah R. Leist, P. Grant, Kendra L. Gully, Frederic B. Askin, Edward P. Browne, Corbin D. Jones, Raymond J. Pickles, Ralph S. Baric, Javier García
Software Mentions: 6
Published: almost 6 years ago

10.7150/jca.55570

Upregulating <i>KTN1</i> promotes Hepatocellular Carcinoma progression
Cited by: 1
Author(s): Jian Pan, Naixia Chao, Yao‐Yao Zhang, Tianyi Huang, Chengxiao Chen, Qiuhong Qin, Jinhong Guo, Rongshi Huang, Guopei Luo
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.3109

Flower power: Floral and resource manipulations reveal how and why reproductive trade‐offs occur for lowbush blueberry ( Vaccinium angustifolium )
Cited by: 5
Author(s): Alex W. Bajcz, Francis A. Drummond
Software Mentions: 6
Published: about 9 years ago

10.7150/ijbs.46645

Identification of a novel cancer stem cell subpopulation that promotes progression of human fatal renal cell carcinoma by single-cell RNA-seq analysis
Cited by: 25
Author(s): Xiuwu Pan, Hao Zhang, Da Xu, Jiaxin Chen, Wen-jin Chen, Sishun Gan, Fajun Qu, Chuanmin Chu, Jun Cao, Yong Fan, Shumin Xu, Jianqing Ye, Zhou Wang, Xingang Cui
Software Mentions: 6
Published: over 6 years ago

10.1128/AAC.00504-21

Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance
Cited by: 4
Author(s): Andrej Trauner, Amir Banaei‐Esfahani, Sebastian M. Gygli, Philipp Warmer, Julia Feldmann, Mattia Zampieri, Sònia Borrell, Ben C. Collins, Christian Beisel, Ruedi Aebersold, Sébastien Gagneux
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.7450

Influence of landscape condition on relative abundance and body condition of two generalist freshwater turtle species
Cited by: 5
Author(s): Joel L. Mota, Donald J. Brown, Danielle M. Canning, Sara M. Crayton, Darien N. Lozon, Alissa L. Gulette, James T. Anderson, Ivana Mali, Brian E. Dickerson, Michael R. J. Forstner, Mark Watson, Thomas K. Pauley
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.8040

Genome‐wide analysis reveals demographic and life‐history patterns associated with habitat modification in landlocked, deep‐spawning sockeye salmon ( Oncorhynchus nerka )
Cited by: 0
Author(s): Farida Samad-zada, Brett T. van Poorten, Shannon L. Harris, Lyse Godbout, Michael A. Russello
Software Mentions: 6
Published: almost 5 years ago

10.1016/j.dib.2019.104444

Data-based investigation on the performance of an independent gas turbine for electricity generation using real power measurements and other closely related parameters
Cited by: 1
Author(s): Ayodele Benjamin Esan, Vincent Ebhohime Ehiaguina, C. O. A. Awosope, Lanre Olatomiwa, Dickson Egbune
Software Mentions: 6
Published: almost 7 years ago

10.1093/conphys/coab033

Using hair cortisol analysis to understand the biological factors that affect black-footed ferret (Mustela nigripes) stress physiology
Cited by: 0
Author(s): Rachel M. Santymire, Nida Ali, Paul Marinari, Travis M. Livieri
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-81103-z

Cysteine: an overlooked energy and carbon source
Cited by: 19
Author(s): Luise Göbbels, Anja Poehlein, Albert Dumnitch, Richard Egelkamp, Cathrin Kröger, Johanna Haerdter, Thomas Hackl, Artur Feld, H. Weller, Rolf Daniel, Wolfgang R. Streit, Marie Charlotte Schoelmerich
Software Mentions: 6
Published: over 5 years ago

10.1126/sciadv.abe8978

Astrocytes and neurons share region-specific transcriptional signatures that confer regional identity to neuronal reprogramming
Cited by: 56
Author(s): Álvaro Herrero-Navarro, Lorenzo Puche-Aroca, Verónica Moreno‐Juan, Alejandro Sempere-Ferràndez, Ana Espinosa, Rafael Susín, Laia Torres-Masjoan, Eduardo Leyva-Díaz, Marisa Karow, María Figueres-Oñate, Laura López‐Mascaraque, José P. López‐Atalaya, Benedikt Berninger, Guillermina López‐Bendito
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-89660-z

Bat responses to changes in forest composition and prey abundance depend on landscape matrix and stand structure
Cited by: 12
Author(s): Jérémy S.P. Froidevaux, Luc Barbaro, Olivier Vinet, Laurent Larrieu, Yves Bas, Jérôme Molina, François Calatayud, Antoine Brin
Software Mentions: 6
Published: about 5 years ago

10.1016/j.tox.2017.03.012

The margin of internal exposure (MOIE) concept for dermal risk assessment based on oral toxicity data – A case study with caffeine
Cited by: 25
Author(s): Jos Bessems, Alicia Paini, M Gajewska, Andrew Worth
Software Mentions: 6
Published: over 8 years ago

10.3389/fimmu.2021.630389

Identification of Novel Genetic Regulatory Region for Proprotein Convertase FURIN and Interferon Gamma in T Cells
Cited by: 6
Author(s): Zsuzsanna Ortutay, Anna Grönholm, Melina Laitinen, Melinda Keresztes-Andrei, Ismaïl Hermelo, Marko Pesu
Software Mentions: 6
Published: over 5 years ago

10.3390/cells10061459

A Distinct Faecal Microbiota and Metabolite Profile Linked to Bowel Habits in Patients with Irritable Bowel Syndrome
Cited by: 19
Author(s): Bani Ahluwalia, Cristina Iribarren, Maria K. Magnusson, Johanna Sundin, Egbert Clevers, Otto Savolainen, Alastair B. Ross, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 6
Published: about 5 years ago

10.3390/ijms22105322

The Detection and Bioinformatic Analysis of Alternative 3′ UTR Isoforms as Potential Cancer Biomarkers
Cited by: 4
Author(s): Nitika Kandhari, Calvin A. Kraupner-Taylor, Paul F. Harrison, David Powell, Traude H. Beilharz
Software Mentions: 6
Published: about 5 years ago

10.1186/s12915-021-01022-3

Sensory adaptations reshaped intrinsic factors underlying morphological diversification in bats
Cited by: 17
Author(s): Jessica H. Arbour, Abigail Curtis, Sharlene E. Santana
Software Mentions: 6
Published: about 5 years ago

10.1186/s12862-020-01721-5

Range and niche expansion through multiple interspecific hybridization: a genotyping by sequencing analysis of Cherleria (Caryophyllaceae)
Cited by: 2
Author(s): Abigail J. Moore, Jennifer A. Messick, Joachim W. Kadereit
Software Mentions: 6
Published: over 5 years ago

10.12688/f1000research.15858.1

Visualizing balances of compositional data: A new alternative to balance dendrograms
Cited by: 13
Author(s): Thomas P. Quinn
Software Mentions: 6
Published: almost 8 years ago

10.1186/s12866-020-02031-y

Identifying candidate Aspergillus pathogenicity factors by annotation frequency
Cited by: 4
Author(s): Kayla K. Pennerman, Guohua Yin, Anthony E. Glenn, Joan W. Bennett
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0251136

Composition of cutaneous bacterial microbiome in seborrheic dermatitis patients: A cross-sectional study
Cited by: 7
Author(s): Martijn G H Sanders, Tamar Nijsten, Joost Verlouw, Robert Kraaij, Luba M. Pardo
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0221543

Insights on aquatic microbiome of the Indian Sundarbans mangrove areas
Cited by: 18
Author(s): Paltu Kumar Dhal, Gérmán A. Kopprio, Astrid Gärdes
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms8101566

The Prokaryotic Microbiome of Acropora digitifera is Stable under Short-Term Artificial Light Pollution
Cited by: 6
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Celine Luisa D. Campos, Sherry Lyn G. Sayco, Patrick C. Cabaitan, Yaeli Rosenberg, Inbal Ayalon, Oren Levy, Cecilia Conaco
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-020-00962-2

Japanese quail (Coturnix japonica) as a novel model to study the relationship between the avian microbiome and microbial endocrinology-based host-microbe interactions
Cited by: 8
Author(s): Joshua M. Lyte, James Keane, Julia Eckenberger, Nicholas B. Anthony, Sandip Shrestha, Daya Marasini, Karrie M. Daniels, Valentina Caputi, Annie Donoghue, Mark Lyte
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-97891-3

Soft threshold partial least squares predicts the survival fraction of malignant glioma cells against different concentrations of methotrexate’s derivatives
Cited by: 0
Author(s): Tahir Mehmood, Mudassir Iqbal
Software Mentions: 6
Published: almost 5 years ago

10.1186/s40168-020-00830-z

The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation
Cited by: 27
Author(s): Camilla Urbaniak, Hernan Lorenzi, James B. Thissen, Crystal Jaing, Brian Crucian, Clarence F. Sams, Duane L. Pierson, Kasthuri Venkateswaran, Satish K. Mehta
Software Mentions: 6
Published: about 6 years ago

10.3758/s13414-021-02294-1

Adjustments of selective attention to response conflict – controlling for perceptual conflict, target-distractor identity, and congruency level sequence pertaining to the congruency sequence effect
Cited by: 1
Author(s): Miriam Tomat, Mike Wendt, Aquiles Luna-Rodriguez, Thomas Jacobsen
Software Mentions: 6
Published: about 5 years ago

10.1128/AEM.02555-20

Microbial Community Shifts Reflect Losses of Native Soil Carbon with Pyrogenic and Fresh Organic Matter Additions and Are Greatest in Low-Carbon Soils
Cited by: 6
Author(s): Thea Whitman, Silene DeCiucies, Kelly Hanley, Akio Enders, Jamie Woolet, Johannes Lehmann
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.203087

Identification of RHOBTB2 aberration as an independent prognostic indicator in acute myeloid leukemia
Cited by: 5
Author(s): Peng Liu, Qinghai Ma, Hanxiang Chen, Li Zhang, Xiaoning Zhang
Software Mentions: 6
Published: about 5 years ago

10.7150/ijbs.32899

A robust 6-mRNA signature for prognosis prediction of pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Chixing Zhou, Yue Zhao, Yuehui Yin, Zhiqiu Hu, Manar Atyah, Wanyong Chen, Zhi Qiang Meng, Huarong Mao, Qiang Zhou, Wei‐Guo Tang, Pengcheng Wang, Zhanming Li, Juyang Weng, Christiane Bruns, Marie Popp, Felix Popp, Qiongzhu Dong, Ning Ren
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pgen.1009591

RDC complex executes a dynamic piRNA program during Drosophila spermatogenesis to safeguard male fertility
Cited by: 17
Author(s): Peiwei Chen, Yicheng Luo, Alexei A. Aravin
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41422-020-00455-9

Discriminating mild from critical COVID-19 by innate and adaptive immune single-cell profiling of bronchoalveolar lavages
Cited by: 203
Author(s): Els Wauters, Pierre Van Mol, Abhishek D. Garg, S.L. Jansen, Yannick Van Herck, Lore Vanderbeke, Ayse Bassez, Bram Boeckx, Bert Malengier‐Devlies, Anna Timmerman, Thomas Van Brussel, Tina Van Buyten, Rogier Schepers, Elisabeth Heylen, Dieter Dauwe, Christophe Dooms, Jan Gunst, Greet Hermans, Philippe Meersseman, Dries Testelmans, Jonas Yserbyt, Sabine Tejpar, Walter De Wever, Patrick Matthys, Maria Bosisio, Michaël P Casaer, Frederik De Smet, Paul De Munter, Stéphanie Humblet-Baron, Adrian Liston, Natalie Lorent, Kim Martinod, Paul Proost, Jeroen Raes, Karin Thevissen, Robin Vos, Birgit Weynand, Carine Wouters, Johan Neyts, Joost Wauters, Junbin Qian, Diether Lambrechts
Software Mentions: 6
Published: over 5 years ago

10.1038/s41421-020-00200-x

Single-cell transcriptome atlas of lung adenocarcinoma featured with ground glass nodules
Cited by: 45
Author(s): Tao Lu, Xiaodong Yang, Yu Shi, Mengnan Zhao, Guoshu Bi, Jiaqi Liang, Zhencong Chen, Yiwei Huang, Wei Jiang, Lin Zhang, Junjie Xi, Shuai Wang, Yong Yang, Cheng Zhan, Qun Wang, Liang Tan
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-016-2483-y

Influenza H3N2 infection of the collaborative cross founder strains reveals highly divergent host responses and identifies a unique phenotype in CAST/EiJ mice
Cited by: 43
Author(s): Sarah R. Leist, Carolin Pilzner, Judith M. A. van den Brand, Leonie Dengler, Robert Geffers, Thijs Kuiken, Rudi Balling, Heike Kollmus, Klaus Schughart
Software Mentions: 6
Published: over 10 years ago

10.1186/s12874-020-01018-7

How are missing data in covariates handled in observational time-to-event studies in oncology? A systematic review
Cited by: 20
Author(s): Orlagh Carroll, Tim P Morris, Ruth H. Keogh
Software Mentions: 6
Published: about 6 years ago

10.1186/1471-2164-10-270

Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events
Cited by: 110
Author(s): Sônia Sousa Melo Cavalcanti de Albuquerque, Céline Carret, Ana Rita Grosso, Alice S. Tarun, Xinxia Peng, Stefan H. I. Kappe, Miguel Prudêncio, Maria M. Mota
Software Mentions: 6
Published: about 17 years ago

10.1186/s12967-020-02689-y

Three hematologic/immune system-specific expressed genes are considered as the potential biomarkers for the diagnosis of early rheumatoid arthritis through bioinformatics analysis
Cited by: 60
Author(s): Qi Cheng, Xin Chen, Huaxiang Wu, Yan Du
Software Mentions: 6
Published: over 5 years ago

10.3390/jpm9020021

The Transcriptomic Toolbox: Resources for Interpreting Large Gene Expression Data within a Precision Medicine Context for Metabolic Disease Atherosclerosis
Cited by: 6
Author(s): Marín de Evsikova C, Isaac Raplee, John H. Lockhart, G Jaimes, Evsikov Av
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-018-33498-5

Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancer
Cited by: 28
Author(s): Raquel L. Costa, Mariana Boroni, Marcelo A. Soares
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-018-19451-6

Cross-species transcriptional analysis reveals conserved and host-specific neoplastic processes in mammalian glioma
Cited by: 20
Author(s): Nina P. Connolly, Amol C. Shetty, Jesse A. Stokum, Ina Hoeschele, Marni B. Siegel, C. Ryan Miller, Anthony J. Kim, Cheng‐Ying Ho, Eduardo Dávila, J. Marc Simard, Scott E. Devine, John H. Rossmeisl, Eric C. Holland, Jeffrey A. Winkles, Graeme F. Woodworth
Software Mentions: 6
Published: over 8 years ago

10.1186/s12864-017-3683-9

Reduced changes in protein compared to mRNA levels across non-proliferating tissues
Cited by: 72
Author(s): Kobi Perl, Kathy Ushakov, Yair Pozniak, Ofer Yizhar-Barnea, Yoni Bhonker, Shaked Shivatzki, Tamar Geiger, Karen B. Avraham, Ron Shamir
Software Mentions: 6
Published: about 9 years ago

10.3389/fpsyg.2018.00991

The Movement-Image Compatibility Effect: Embodiment Theory Interpretations of Motor Resonance With Digitized Photographs, Drawings, and Paintings
Cited by: 2
Author(s): Mark-Oliver Casper, John A. Nyakatura, Anja Pawel, Christina B. Reimer, Torsten Schubert, Marion Lauschke
Software Mentions: 6
Published: about 8 years ago

10.1186/1471-2105-14-S5-S10

An optimized algorithm for detecting and annotating regional differential methylation
Cited by: 101
Author(s): Shengyong Li, Francine E. Garrett-Bakelman, Altuna Akalin, Paul Zumbo, Ross L. Levine, Bik To, Ian D. Lewis, Anna L. Brown, Richard J. D’Andrea, Ari Melnick, Christopher E. Mason
Software Mentions: 6
Published: over 13 years ago

10.1007/s10994-020-05890-8

Propositionalization and embeddings: two sides of the same coin
Cited by: 20
Author(s): Nada Lavrač, Blaž Škrlj, Marko Robnik–Šikonja
Software Mentions: 6
Published: about 6 years ago

10.1111/jcmm.14938

A risk signature with four autophagy‐related genes for predicting survival of glioblastoma multiforme
Cited by: 47
Author(s): Yulin Wang, Wenjin Zhao, Zhe Xiao, Gefei Guan, Xin Liu, Minghua Zhuang
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-42713-w

The effect of numerical aperture on quantitative use-wear studies and its implication on reproducibility
Cited by: 22
Author(s): Ivan Calandra, Lisa Schunk, Konstantin Bob, Walter Gneisinger, Antonella Pedergnana, Eduardo Paixão, Andreas Hildebrandt, João Marreiros
Software Mentions: 6
Published: about 7 years ago

10.1200/PO.17.00241

Transcriptional Subtyping and CD8 Immunohistochemistry Identifies Patients With Stage II and III Colorectal Cancer With Poor Prognosis Who Benefit From Adjuvant Chemotherapy
Cited by: 40
Author(s): Wendy L. Allen, Philip D. Dunne, Simon S. McDade, Enya Scanlon, Maurice B. Loughrey, Helen Coleman, Christopher McCann, Kristy McLaughlin, Zsuzsanna Németh, Najeeb Syed, Puthen V. Jithesh, Ken Arthur, Richard H. Wilson, Vicky M. Coyle, Darragh G. McArt, Graeme I. Murray, Leslie Samuel, Paolo Nuciforo, José Jimenez, Guillem Argilés, Rodrigo Dienstmann, J. Tabernero, Lucia Picariello, Luca Messerini, Stefania Nobili, Enrico Mini, Kieran Sheahan, Elizabeth J. Ryan, Patrick G. Johnston, Sandra Van Schaeybroeck, Mark Lawler, Daniel B. Longley
Software Mentions: 6
Published: over 7 years ago

10.1186/gm496

A robust prognostic signature for hormone-positive node-negative breast cancer
Cited by: 18
Author(s): Obi L. Griffith, François Pépin, Oana Enache, Laura M. Heiser, Eric A. Collisson, Paul T. Spellman, Joe W. Gray
Software Mentions: 6
Published: over 13 years ago

10.1186/s12862-014-0204-1

Strong genetic structure corresponds to small-scale geographic breaks in the Australian alpine grasshopper Kosciuscola tristis
Cited by: 16
Author(s): R. O. Slatyer, M. Nash, Adam D. Miller, Yoshinori Endo, Kate D. L. Umbers, Ary A. Hoffmann
Software Mentions: 6
Published: almost 12 years ago

10.1186/s13068-018-1116-x

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
Cited by: 54
Author(s): Shihui Yang, Jessica M. Vera, Jeff Grass, Giannis Savvakis, Oleg V. Moskvin, Yongqiang Yang, Sean J. McIlwain, Yucai Lyu, Irene Zinonos, Alexander S. Hebert, Joshua J. Coon, Donna M. Bates, Trey K. Sato, Steven D. Brown, Michael E. Himmel, Min Zhang, Robert Landick, Katherine M. Pappas, Yaoping Zhang
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0226813

An investigation of transportation practices in an Ontario swine system using descriptive network analysis
Cited by: 5
Author(s): Dylan John Melmer, Terri L. O’Sullivan, Amy L. Greer, Zvonimir Poljak
Software Mentions: 6
Published: over 6 years ago

10.1016/j.isci.2021.102690

Functional and genomic adaptations of blood monocytes to pregravid obesity during pregnancy
Cited by: 12
Author(s): Suhas Sureshchandra, Nicole Marshall, Norma Mendoza, Allen Jankeel, Michael Z. Zulu, Ilhem Messaoudi
Software Mentions: 6
Published: about 5 years ago

10.1016/j.xpro.2020.100079

Using Chromatin Accessibility to Delineate Therapeutic Subtypes in Pancreatic Cancer Patient-Derived Cell Lines
Cited by: 4
Author(s): Holly Brunton, Ian Garner, Ulla-Maja Bailey, Rosanna Upstill-Goddard, Peter J. Bailey
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pntd.0009633

Identification of potential biomarkers in dengue via integrated bioinformatic analysis
Cited by: 5
Author(s): Lisha Xie, Xin Yin, Jie Bi, Hongyu Luo, Xun‐Jie Cao, Yu-Wen Ma, Ye-Ling Liu, Jianwen Su, Geng-Ling Lin, Xu‐Guang Guo
Software Mentions: 6
Published: almost 5 years ago

10.1177/1747493018799962

A protocol for precise comparisons of small vessel disease lesions between ex vivo magnetic resonance imaging and histopathology
Cited by: 12
Author(s): Cathy Humphreys, Maurits A. Jansen, Susana Muñoz Maniega, V́ıctor González-Castro, Cyril Pernet, Ian J. Deary, Rustam Al-Shahi Salman, Joanna M. Wardlaw, Colin Smith
Software Mentions: 6
Published: almost 8 years ago

10.7717/peerj.8505

Identification and validation of key modules and hub genes associated with the pathological stage of oral squamous cell carcinoma by weighted gene co-expression network analysis
Cited by: 10
Author(s): Xuegang Hu, Genban Sun, Zhiqiang Shi, Hui Ni, Shan Jiang
Software Mentions: 6
Published: over 6 years ago

10.1111/eva.13227

No leading‐edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications
Cited by: 2
Author(s): Yacine Ben Chehida, Roisin Loughnane, Julie Thumloup, Kristin Kaschner, Cristina Garilao, Patricia E. Rosel, Michaël C. Fontaine
Software Mentions: 6
Published: over 5 years ago

10.1186/1743-422X-11-126

Reactive astrogliosis in response to hemorrhagic fever virus: microarray profile of Junin virus-infected human astrocytes
Cited by: 8
Author(s): Olga A. Kolokoltsova, Nadezhda E. Yun, Slobodan Paessler
Software Mentions: 6
Published: almost 12 years ago

10.1186/s12864-020-07015-w

Tracing key genes associated with the Pinctada margaritifera albino phenotype from juvenile to cultured pearl harvest stages using multiple whole transcriptome sequencing
Cited by: 5
Author(s): Pauline Auffret, Jérémy Le Luyer, Manaarii Sham Koua, Virgile Quillien, Chin‐Long Ky
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.7020

Numerical response of predators to large variations of grassland vole abundance and long‐term community changes
Cited by: 3
Author(s): Patrick Giraudoux, Aurélien Levret, Eve Afonso, Michaël Cœurdassier, Geoffroy Couval
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0043846

Long-Term Field Data and Climate-Habitat Models Show That Orangutan Persistence Depends on Effective Forest Management and Greenhouse Gas Mitigation
Cited by: 20
Author(s): Stephen D. Gregory, Barry W. Brook, Benoît Goossens, Marc Ancrenaz, Rayner Alfred, Laurentius Ambu, Damien A. Fordham
Software Mentions: 6
Published: almost 14 years ago

10.1371/journal.pone.0256868

Ensemble ecological niche modeling of West Nile virus probability in Florida
Cited by: 10
Author(s): Sean P. Beeman, Andrea Morrison, Thomas R. Unnasch, Robert S. Unnasch
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0211869

Influence of body size, topography, food availability and tree-fall gaps on space use by yellow-footed tortoises (Chelonoidis denticulatus) in Central Amazonia
Cited by: 4
Author(s): Anna Carolina Faria Moreira Gomes Tavares, Thaís Q. Morcatty, Jansen Zuanon, William E. Magnusson
Software Mentions: 6
Published: over 7 years ago

10.3389/fpsyg.2020.601574

Coronavirus Disease Stress Among Italian Healthcare Workers: The Role of Coping Humor
Cited by: 32
Author(s): Carla Canestrari, Ramona Bongelli, Alessandra Fermani, Ilaria Riccioni, Alessia Bertolazzi, Morena Muzi, Roberto Burro
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1008804

Activation of cryptic splicing in bovine WDR19 is associated with reduced semen quality and male fertility
Cited by: 24
Author(s): Maya Hiltpold, Guanglin Niu, Naveen Kumar Kadri, Danang Crysnanto, Zih-Hua Fang, Mirjam Spengeler, F. Schmitz‐Hsu, Christian Fuerst, Hermann Schwarzenbacher, Franz R. Seefried, Frauke Seehusen, Ulrich Witschi, Angelika Schnieke, R. Fries, Heinrich Bollwein, Krzysztof Flisikowski, Hubert Pausch
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0144590

The Potential Influence of Bumble Bee Visitation on Foraging Behaviors and Assemblages of Honey Bees on Squash Flowers in Highland Agricultural Ecosystems
Cited by: 5
Author(s): Zhenghua Xie, Dongdong Pan, Jonathan Teichroew, Jiandong An
Software Mentions: 6
Published: over 10 years ago

10.1016/j.xcrm.2021.100267

Cabozantinib and dasatinib synergize to induce tumor regression in non-clear cell renal cell carcinoma
Cited by: 2
Author(s): Hui Wen Lue, Daniel S. Derrick, Soumya Rao, Ahna Van Gaest, Larry C. Cheng, Jennifer Podolak, Samantha Lawson, Changhui Xue, Devin Garg, Ralph E. White, Christopher W. Ryan, Justin M. Drake, Anna Ritz, Laura M. Heiser, George V. Thomas
Software Mentions: 6
Published: about 5 years ago

10.1186/s13326-019-0212-6

Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes
Cited by: 6
Author(s): Mercedes Arguello-Casteleiro, Robert Stevens, Julio Des-Diz, Chris Wroe, M.J. Fernandez-Prieto, Nava Maroto, Diego Maseda-Fernandez, George Demetriou, Simon Peters, P. J. W. Noble, Phil Jones, Joanna Dukes‐McEwan, Alan Radford, John Keane, Goran Nenadić
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pntd.0008179

Predicting disease risk areas through co-production of spatial models: The example of Kyasanur Forest Disease in India’s forest landscapes
Cited by: 26
Author(s): Bethan V. Purse, Narayanaswamy Darshan, Gudadappa S. Kasabi, F. Gerard, Abhishek Samrat, Charles George, Abi Tamim Vanak, Meera Anna Oommen, Mujeeb Rahman, Sarah J. Burthe, Juliette Young, Prashanth Nuggehalli Srinivas, Stefanie Schäfer, Peter A. Henrys, Vijay K. Sandhya, Mohammed Mudassar Chanda, Manoj Murhekar, S.L. Hoti, Shivani K. Kiran
Software Mentions: 6
Published: about 6 years ago

10.1186/s12864-020-07013-y

Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework
Cited by: 3
Author(s): Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee
Software Mentions: 6
Published: over 5 years ago

10.3390/ijerph18168656

Traditional Gender Differences Create Gaps in the Effect of COVID-19 on Psychological Distress of Japanese Workers
Cited by: 10
Author(s): Tomoyuki Kobayashi, Masaharu Maeda, Yui Takebayashi, Hideki Sato
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-82156-w

Cerebrum, liver, and muscle regulatory networks uncover maternal nutrition effects in developmental programming of beef cattle during early pregnancy
Cited by: 23
Author(s): Wellison J. S. Diniz, Matthew S Crouse, Robert A. Cushman, Kyle J McLean, J. S. Caton, Carl R Dahlen, Lawrence P. Reynolds, Alison K Ward
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0237272

Passenger-surface microbiome interactions in the subway of Mexico City
Cited by: 10
Author(s): Daniela Vargas-Robles, Carolina Gonzalez-Cedillo, Apolinar M. Hernández, Luis David Alcaraz, Mariana Peimbert
Software Mentions: 6
Published: almost 6 years ago

10.1007/s00604-018-3195-6

A smartphone readout system for gold nanoparticle-based lateral flow assays: application to monitoring of digoxigenin
Cited by: 46
Author(s): Christoph Ruppert, Navneet Phogat, Stefan Laufer, Matthias Kohl, Hans‐Peter Deigner
Software Mentions: 6
Published: over 7 years ago

10.3897/BDJ.7.e31511

rMyCoPortal - an R package to interface with the Mycology Collections Portal
Cited by: 3
Author(s): Franz‐Sebastian Krah, Scott T. Bates, Andrew N. Miller
Software Mentions: 6
Published: over 7 years ago

10.1186/s12866-019-1672-7

An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR
Cited by: 26
Author(s): Shi-Qi An, Miguel A. Valvano, Yu Yi, Jeremy S. Webb, Guillermo López–Campos
Software Mentions: 6
Published: over 6 years ago

10.1186/s12859-019-2780-y

Focused multidimensional scaling: interactive visualization for exploration of high-dimensional data
Cited by: 11
Author(s): Lea Urpa, Simon Anders
Software Mentions: 6
Published: about 7 years ago

10.1186/1471-2105-9-86

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Cited by: 75
Author(s): Frédéric Chalmel, Michael Primig
Software Mentions: 6
Published: over 18 years ago

10.7554/eLife.58931

Recurrent evolution of high virulence in isolated populations of a DNA virus
Cited by: 11
Author(s): Tom Hill, Robert L. Unckless
Software Mentions: 6
Published: over 5 years ago

10.3389/fphar.2021.692442

Development, Testing, Parameterisation and Calibration of a Human PBPK Model for the Plasticiser, Di-(2-propylheptyl) Phthalate (DPHP) Using in Silico, in vitro and Human Biomonitoring Data
Cited by: 6
Author(s): Kevin McNally, Craig Sams, Alex Hogg, Annie Lumen, George Loizou
Software Mentions: 6
Published: almost 5 years ago

10.3389/fphar.2019.01394

Development, Testing, Parameterization, and Calibration of a Human Physiologically Based Pharmacokinetic Model for the Plasticizer, Hexamoll® Diisononyl-Cyclohexane-1, 2-Dicarboxylate Using In Silico, In Vitro, and Human Biomonitoring Data
Cited by: 9
Author(s): Kevin McNally, Craig Sams, George Loizou
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0028966

Understanding and Classifying Metabolite Space and Metabolite-Likeness
Cited by: 55
Author(s): Julio E. Peironcely, Theo H. Reijmers, L Coulier, Andreas Bender, Thomas Hankemeier
Software Mentions: 6
Published: over 14 years ago

10.3390/pharmaceutics11050224

Application of Pharmacometrics in Pharmacotherapy: Open-Source Software for Vancomycin Therapeutic Drug Management
Cited by: 14
Author(s): Soo Hyeon Bae, Dong‐Seok Yim, Hyemi Lee, Ae-Ryoung Park, J. Chan Kwon, Satoshi Hirata, Seunghoon Han
Software Mentions: 6
Published: about 7 years ago

10.1038/s41398-021-01447-y

Essential genes from genome-wide screenings as a resource for neuropsychiatric disorders gene discovery
Cited by: 2
Author(s): Wei Zhang, Joao L De Quevedo, Gabriel R. Fries
Software Mentions: 6
Published: about 5 years ago

10.1186/s13229-019-0287-z

A meta-analysis of two high-risk prospective cohort studies reveals autism-specific transcriptional changes to chromatin, autoimmune, and environmental response genes in umbilical cord blood
Cited by: 12
Author(s): Charles E. Mordaunt, Bo Y. Park, Kelly M. Bakulski, Jason I. Feinberg, Lisa Croen, Christine Ladd‐Acosta, Craig J. Newschaffer, Heather E. Volk, Sally J Ozonoff, Irva Hertz‐Picciotto, Janine M. LaSalle, Rebecca Jean Schmidt, M. Daniele Fallin
Software Mentions: 6
Published: over 6 years ago

10.1098/rsob.160183

Prediction and validation of protein–protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach
Cited by: 10
Author(s): Ashley J. Waardenberg, Homan Bernou, Mohamed Salim, Richard P. Harvey, Romaric Bouveret
Software Mentions: 6
Published: almost 10 years ago

10.3389/fpls.2021.589093

Eunuchs or Females? Causes and Consequences of Gynodioecy on Morphology, Ploidy, and Ecology of Stellaria graminea L. (Caryophyllaceae)
Cited by: 1
Author(s): Jaromír Kučera, Marek Svitok, Eliška Gbúrová Štubňová, Lenka Mártonfiová, Clément Lafon‐Placette, Marek Slovák
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2018.01888

Infection-Induced Changes Within the Endocytic Recycling Compartment Suggest a Roadmap of Human Cytomegalovirus Egress
Cited by: 16
Author(s): William L. Close, James Glassbrook, Stephen J. Gurczynski, Philip E. Pellett
Software Mentions: 6
Published: almost 8 years ago

10.1136/bmj.m3249

Clinical characteristics of children and young people admitted to hospital with covid-19 in United Kingdom: prospective multicentre observational cohort study
Cited by: 445
Author(s): Olivia Swann, Karl Holden, Lance Turtle, Louisa Pollock, Cameron J Fairfield, Thomas M Drake, Sohan Seth, Conor Egan, Hayley Hardwick, Sophie Halpin, Michelle Girvan, Chloe Donohue, Mark G Pritchard, Latifa Patel, Shamez Ladhani, Louise Sigfrid, Ian Sinha, Piero Olliaro, Jonathan S Nguyen‐Van‐Tam, Peter Horby, Laura Merson, Gail Carson, Jake Dunning, Peter Openshaw, J Kenneth Baillie, Ewen M Harrison, Annemarie B Docherty, Malcolm G Semple
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12903-021-01832-5

The effects of removing dead bacteria by propidium monoazide on the profile of salivary microbiome
Cited by: 5
Author(s): Qidi Ren, Fangqiao Wei, Chao Yuan, Ce Zhu, Qian Zhang, Junkang Quan, Xiangyu Sun, Shuguo Zheng
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12859-016-1083-9

flowVS: channel-specific variance stabilization in flow cytometry
Cited by: 15
Author(s): Ariful Azad, Bartek Rajwa, Alex Pothen
Software Mentions: 6
Published: almost 10 years ago

10.1186/s13059-020-02128-7

Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis
Cited by: 15
Author(s): Félix Raimundo, Céline Vallot, Jean-Philippe Vert
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13059-019-1837-6

DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data
Cited by: 162
Author(s): Cédric Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana X. Garmire
Software Mentions: 6
Published: over 6 years ago

10.3389/fgene.2020.570255

A Review of Integrative Imputation for Multi-Omics Datasets
Cited by: 48
Author(s): Meng Song, Jonathan Greenbaum, Joseph Luttrell, Weihua Zhou, Chong Wu, Hui Shen, Ping Gong, Chaoyang Zhang, Hong Wen Deng
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.2736

Shortcuts in biodiversity research: What determines the performance of higher taxa as surrogates for species?
Cited by: 29
Author(s): Neil Rosser
Software Mentions: 6
Published: over 9 years ago

10.1002/evl3.254

Ageing as “early-life inertia”: Disentangling life-history trade-offs along a lifetime of an individual
Cited by: 9
Author(s): Hanne Carlsson, Edward Ivimey‐Cook, Elizabeth M. L. Duxbury, Nathan Edden, Kris Sales, Alexei A. Maklakov
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12968-015-0217-y

Mapping tissue inhomogeneity in acute myocarditis: a novel analytical approach to quantitative myocardial edema imaging by T2-mapping
Cited by: 51
Author(s): Bettina Baeßler, Frank Schaarschmidt, Anastasia Dick, Christian Stehning, Bernhard Schnackenburg, Guido Michels, David Maintz, Alexander C. Bunck
Software Mentions: 6
Published: over 10 years ago

10.1186/s12864-016-2718-y

Ribosome quality control is a central protection mechanism for yeast exposed to deoxynivalenol and trichothecin
Cited by: 11
Author(s): Karl G. Kugler, Zeljkica Jandric, Reinhard Beyer, Eva Klopf, Walter Glaser, Marc Lemmens, Mehrdad Shams, Klaus Mayer, Gerhard Adam, Christoph Schüller
Software Mentions: 6
Published: about 10 years ago

10.3389/fendo.2019.00664

Functional and Symptomatic Individuality in the Response to Levothyroxine Treatment
Cited by: 13
Author(s): Rudolf Hoermann, Midgley Jem, Rolf Larisch, Johannes W. Dietrich
Software Mentions: 6
Published: almost 7 years ago

10.3390/plants10061033

Metabolic Alterations in Pisum sativum Roots during Plant Growth and Arbuscular Mycorrhiza Development
Cited by: 13
Author(s): O. Y. Shtark, Roman Puzanskiy, G. S. Avdeeva, Vladislav V. Yemelyanov, А. Л. Шаварда, Daria A. Romanyuk, Marina S. Kliukova, А. А. Кирпичникова, И. А. Тихонович, Vladimir A. Zhukov, М. Ф. Шишова
Software Mentions: 6
Published: about 5 years ago