10.1107/S2052252519001878

Ice formation and solvent nanoconfinement in protein crystals
Cited by: 9
Author(s): David Moreau, Hakan Atakişi, Robert Thorne
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252514012585

Structure and function study of the complex that synthesizes<i>S</i>-adenosylmethionine
Cited by: 35
Author(s): Ben Murray, S.V. Antonyuk, A. Marina, Sebastiaan van Liempd, Shelly C. Lu, José M. Mato, S.S. Hasnain, Adriana L. Rojas
Software Mentions: 1
Published: about 12 years ago

10.1107/S2052252520004030

Atomic structures determined from digitally defined nanocrystalline regions
Cited by: 8
Author(s): Marcus Gallagher-Jones, Karen C. Bustillo, Colin Ophus, Logan S. Richards, Jim Ciston, Sang-Ho Lee, Andrew M. Minor, José A. Rodríguez
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.670145

The Inhibition of B7H3 by 2-HG Accumulation Is Associated With Downregulation of VEGFA in IDH Mutated Gliomas
Cited by: 3
Author(s): Mengli Zhang, Huaichao Zhang, Minjie Fu, Jingwen Zhang, Cheng Zhang, Yingying Lv, Fengfeng Fan, Jinsen Zhang, Hao Xu, Dan Ye, Hui Yang, Wei Hua, Ying Mao
Software Mentions: 1
Published: over 5 years ago

10.1107/S2052252514021113

Binding site asymmetry in human transthyretin: insights from a joint neutron and X-ray crystallographic analysis using perdeuterated protein
Cited by: 26
Author(s): Melina Haupt, Matthew P. Blakeley, S.J. Fisher, Sax A. Mason, J.B. Cooper, Edward P. Mitchell, V. Trevor Forsyth
Software Mentions: 1
Published: almost 12 years ago

10.1107/S2052252520006855

1.8 Å resolution structure of β-galactosidase with a 200 kV CRYO ARM electron microscope
Cited by: 25
Author(s): Alan Merk, Takuma Fukumura, Xing Zhu, Joseph E. Darling, Reinhard Grisshammer, Jana Ognjenović, Sriram Subramaniam
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2021.629116

Characterization of a Deep Sea Bacillus toyonensis Isolate: Genomic and Pathogenic Features
Cited by: 11
Author(s): Jing-Chang Luo, Heng Long, Jian Zhang, Yan Zhao, Li Sun
Software Mentions: 1
Published: over 5 years ago

10.1107/S2052252519011655

High-throughput structures of protein–ligand complexes at room temperature using serial femtosecond crystallography
Cited by: 33
Author(s): T. Moreno-Chicano, Ali Ebrahim, Danny Axford, M.V. Appleby, John Beale, Amanda K. Chaplin, Duyvesteyn Hme., Reza A. Ghiladi, Shigeki Owada, D.A. Sherrell, R.W. Strange, Hiroshi Sugimoto, Kensuke Tono, J.A.R. Worrall, Robin L. Owen, Hough
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2019.00370

Characterization of the Genome Feature and Toxic Capacity of a Bacillus wiedmannii Isolate From the Hydrothermal Field in Okinawa Trough
Cited by: 11
Author(s): Yan Zhao, Chen Chen, Hanjie Gu, Jian Zhang, Li Sun
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2018.00373

pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System
Cited by: 8
Author(s): Agnieszka Wróbel, Claudio Ottoni, Jack C. Leo, Dirk Linke
Software Mentions: 1
Published: almost 8 years ago

10.1107/S2052252519008285

Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography
Cited by: 24
Author(s): T.P. Halsted, Keitaro Yamashita, Chai Gopalasingam, Rajesh T. Shenoy, Kunio Hirata, Hideo Ago, Go Ueno, Matthew P. Blakeley, Robert R. Eady, S.V. Antonyuk, Masaki Yamamoto, S.S. Hasnain
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2020.550677

Identification and Expression Analysis of the CsMYB Gene Family in Root Knot Nematode-Resistant and Susceptible Cucumbers
Cited by: 9
Author(s): Chunyan Cheng, Qingrong Li, Xing Wang, Ying Li, Chuntao Qian, Ji Li, Qunfeng Lou, Molly M. Jahn, Jinfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2014.00163

Evolution of genomic structural variation and genomic architecture in the adaptive radiations of African cichlid fishes
Cited by: 22
Author(s): Shaohua Fan, Axel Meyer
Software Mentions: 1
Published: about 12 years ago

10.1107/S2052252519014507

Recent trends in crystallography – a current IUCr journals perspective
Cited by: 0
Author(s): Andrew J. Allen
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.36402

Cryo-EM structure of alpha-synuclein fibrils
Cited by: 408
Author(s): Ricardo C. Guerrero-Ferreira, Nicholas M. I. Taylor, Daniel Mona, Philippe Ringler, Matthias E. Lauer, Roland Riek, Markus Britschgi, Henning Stahlberg
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2020.00729

Characteristics and Mutational Hotspots of Plastomes in Debregeasia (Urticaceae)
Cited by: 15
Author(s): Ruonan Wang, Richard I. Milne, Xin Du, Jie Liu, Zeng-Yuan Wu
Software Mentions: 1
Published: about 6 years ago

10.1107/S2052252516014147

Lytic polysaccharide monooxygenases: a crystallographer's view on a new class of biomass-degrading enzymes
Cited by: 77
Author(s): Kristian E. H. Frandsen, Leila Lo Leggio
Software Mentions: 1
Published: almost 10 years ago

10.1107/S205225251900914X

1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector
Cited by: 28
Author(s): A. Tolstikova, Matteo Levantino, Oleksandr Yefanov, V. Hennicke, P. Fischer, Jan Meyer, A. Mozzanica, S. Redford, Eva Crosas, Nadia Opara, Miriam Barthelmeß, J. Lieske, D. Oberthüer, E. Wator, István Mohácsi, Michaël Wulff, B. Schmitt, Henry N. Chapman, A. Meents
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2019.00737

A Survey of Copy Number Variation in the Porcine Genome Detected From Whole-Genome Sequence
Cited by: 16
Author(s): Brittney N Keel, Dan Nonneman, A. K. Lindholm‐Perry, W. T. Oliver, G. A. Rohrer
Software Mentions: 1
Published: about 7 years ago

10.1107/S2052252519005955

Conservation of the structure and function of bacterial tryptophan synthases
Cited by: 10
Author(s): K. Michalska, Jennifer Gale, G. Joachimiak, Changsoo Chang, C. Hatzos-Skintges, B. Nocek, Stephen Johnston, L. Bigelow, Besnik Bajrami, R. Jedrzejczak, Samantha Wellington, Deborah T. Hung, Partha P. Nag, Stewart L. Fisher, M. Endres, Andrzej Joachimiak
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2019.01276

Genome-Wide Identification, Characterization, and Transcript Analysis of the TCP Transcription Factors in Vitis vinifera
Cited by: 23
Author(s): Songtao Jiu, Yan Xu, Jiyuan Wang, Lei Wang, Shiping Wang, Chao Ma, Le Guan, Muhammad Abdullah, Maoxiang Zhao, Wenping Xu, Wenxue Ma, Caixi Zhang
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2018.00281

Genome Wide Identification of Novel Long Non-coding RNAs and Their Potential Associations With Milk Proteins in Chinese Holstein Cows
Cited by: 23
Author(s): Wentao Cai, Cong Li, Shuli Liu, Chixing Zhou, Hongwei Yin, Jiuzhou Song, Qin Zhang, Shengli Zhang
Software Mentions: 1
Published: about 8 years ago

10.1107/S2052252518001124

Intermolecular correlations are necessary to explain diffuse scattering from protein crystals
Cited by: 22
Author(s): Ariana Peck, Frédéric Poitevin, Thomas J Lane
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2021.538733

Genome-Wide Analysis of Dof Genes and Their Response to Abiotic Stress in Rose (Rosa chinensis)
Cited by: 10
Author(s): Hong Nan, Richard A. Ludlow, Min Lü, Hongyu An
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00086

Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.)
Cited by: 14
Author(s): D.S. Kishor, Jeonghwan Seo, Joong Hyoun Chin, Hee‐Jong Koh
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.658148

Mungbean DIRIGENT Gene Subfamilies and Their Expression Profiles Under Salt and Drought Stresses
Cited by: 5
Author(s): Wenying Xu, Tong Liu, Huiying Zhang, Hong Zhu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2019.00980

Identification and Analysis of the GASR Gene Family in Common Wheat (Triticum aestivum L.) and Characterization of TaGASR34, a Gene Associated With Seed Dormancy and Germination
Cited by: 26
Author(s): Xinran Cheng, Shengxing Wang, Dongmei Xu, Liyan Xue, Xinyu Li, Weiwei Xiao, Junhui Cao, Hao Jiang, Xiaoyu Min, Jianfeng Wang, Haiping Zhang, Cheng Chang, Jie Lu, Chunyan Ma
Software Mentions: 1
Published: almost 7 years ago

10.1107/S2052252519006651

Formation of a highly dense tetra-rhenium cluster in a protein crystal and its implications in medical imaging
Cited by: 11
Author(s): Alice Brink, John R. Helliwell
Software Mentions: 1
Published: about 7 years ago

10.1107/S2052252515024161

High-resolution neutron and X-ray diffraction room-temperature studies of an H-FABP–oleic acid complex: study of the internal water cluster and ligand binding by a transferred multipolar electron-density distribution
Cited by: 30
Author(s): Eduardo Howard, B. Guillot, Matthew P. Blakeley, Michael Haertlein, Martine Moulin, A. Mitschler, A. Cousido-Siah, Firas Fadel, Wanda M. Valsecchi, Takashi Tanaka, T. Petrova, Julien Claudot, A. Podjarny
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2020.609184

Genome-Wide Characterization of the HSP20 Gene Family Identifies Potential Members Involved in Temperature Stress Response in Apple
Cited by: 22
Author(s): Feng Yao, Chunhui Song, Hongtao Wang, Shangwei Song, Jian Jiao, Miaomiao Wang, Xianbo Zheng, Tuanhui Bai
Software Mentions: 1
Published: almost 6 years ago

10.1107/S2052252519011692

<i>DeepRes</i>: a new deep-learning- and aspect-based local resolution method for electron-microscopy maps
Cited by: 43
Author(s): Erney Ramírez-Aportela, Javier Mota, Pablo Conesa, José Marı́a Carazo, C.O.S. Sorzano
Software Mentions: 1
Published: almost 7 years ago

10.7150/ijbs.57673

Crystal structure of the MyRF ICA domain with its upstream β-helical stalk reveals the molecular mechanisms underlying its trimerization and self-cleavage
Cited by: 2
Author(s): Pei Wu, Xiangkai Zhen, Bowen Li, Yu Qian, Xiaochen Huang, Ning Shi
Software Mentions: 1
Published: over 5 years ago

10.1084/jem.20191957

Metabolic bifunctionality of Rv0812 couples folate and peptidoglycan biosynthesis in <i>Mycobacterium tuberculosis</i>
Cited by: 4
Author(s): Katherine A. Black, Lei Duan, Lungelo Mandyoli, Bruna Pelegrim Selbach, Weizhen Xu, Sabine Ehrt, James C. Sacchettini, Kyu Y. Rhee
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.737194

StAR-Related Lipid Transfer (START) Domains Across the Rice Pangenome Reveal How Ontogeny Recapitulated Selection Pressures During Rice Domestication
Cited by: 2
Author(s): Sanjeet Kumar Mahtha, Ravi Kiran Purama, Gitanjali Yadav
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2020.590535

Genome-Wide Identification and Comparative Analysis of ARF Family Genes in Three Apiaceae Species
Cited by: 6
Author(s): Qiaoying Pei, Nan Li, Qing Yang, Tong Wu, Shuyan Feng, Xuehuan Feng, Zange Jing, Rong Zhou, Ke Gong, Tong Yu, Zhen Wang, Xiaoming Song
Software Mentions: 1
Published: over 5 years ago

10.1186/s13045-021-01032-2

Recurrent XPO1 mutations alter pathogenesis of chronic lymphocytic leukemia
Cited by: 25
Author(s): J. T. Walker, Zachary A. Hing, Bonnie K. Harrington, J.M. Baumhardt, Hatice Gülçin Özer, Amy Lehman, Brian Giacopelli, Larry Beaver, Katie Williams, Jordan Skinner, Casey B. Cempre, Qingxiang Sun, Sharon Shacham, Benjamin R. Stromberg, Matthew K. Summers, Lynne V. Abruzzo, Laura Z. Rassenti, Thomas J. Kipps, Sameer A. Parikh, Neil E. Kay, Kerry A. Rogers, Jennifer A. Woyach, Vincenzo Coppola, Yuh Min Chook, Christopher C. Oakes, John C. Byrd, Rosa Lapalombella
Software Mentions: 1
Published: over 5 years ago

10.1016/j.ijpddr.2016.02.001

The Ascaris suum nicotinic receptor, ACR-16, as a drug target: Four novel negative allosteric modulators from virtual screening
Cited by: 15
Author(s): Fudan Zheng, Alan P. Robertson, Melanie Abongwa, Edward Yu, R. J. Martin
Software Mentions: 1
Published: over 10 years ago

10.1016/j.jinorgbio.2016.07.013

Use of ferrous iron by metallo-β-lactamases
Cited by: 20
Author(s): Samuel T. Cahill, Hanna Tarhonskaya, Anna M. Rydzik, Emily Flashman, M.A. McDonough, Christopher J. Schofield, Jürgen Brem
Software Mentions: 1
Published: almost 10 years ago

10.3389/fgene.2021.696300

Identification and Expression Analyses of Invertase Genes in Moso Bamboo Reveal Their Potential Drought Stress Functions
Cited by: 4
Author(s): Chenglei Zhu, Kebin Yang, Guangzhu Li, Ying Liu, Zhimin Gao
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jlr.2021.100054

Molecular basis for the interaction of cellular retinol binding protein 2 (CRBP2) with nonretinoid ligands
Cited by: 6
Author(s): J.A. Silvaroli, Jacqueline Plau, Charlie H. Adams, Surajit Banerjee, Made Airanthi K. Widjaja‐Adhi, William S. Blaner, Marcin Golczak
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.584886

Genome-Wide Characterization of HSP90 Gene Family in Cucumber and Their Potential Roles in Response to Abiotic and Biotic Stresses
Cited by: 9
Author(s): Kaijing Zhang, Shuaishuai He, Sui YiHu, Qinghai Gao, Shuangshuang Jia, Xingrong Lu, Jia Li
Software Mentions: 1
Published: over 5 years ago

10.1021/acs.jmedchem.0c00373

Shedding X-ray Light on the Role of Magnesium in the Activity of <i>Mycobacterium tuberculosis</i> Salicylate Synthase (MbtI) for Drug Design
Cited by: 18
Author(s): Matteo Mori, Giovanni Stelitano, Arianna Gelain, Elena Pini, Laurent R. Chiarelli, Josè Camilla Sammartino, Giulio Poli, Tiziano Tuccinardi, Giangiacomo Beretta, Alessio Porta, M. Bellinzoni, Stefania Villa, Fiorella Meneghetti
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2018.00494

Molecular Evolution and Stress and Phytohormone Responsiveness of SUT Genes in Gossypium hirsutum
Cited by: 13
Author(s): Wei Li, Kuan Sun, Zhongying Ren, Chengxiang Song, Xinwu Pei, Yangai Liu, Zhenyu Wang, Kunlun He, Fei Zhang, Xin Zhou, Xiongfeng Ma, Daigang Yang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2019.00632

In Silico Genome-Wide Analysis of the Pear (Pyrus bretschneideri) KNOX Family and the Functional Characterization of PbKNOX1, an Arabidopsis BREVIPEDICELLUS Orthologue Gene, Involved in Cell Wall and Lignin Biosynthesis
Cited by: 23
Author(s): Xi Cheng, Manli Li, Muhammad Abdullah, Guohui Li, Jingyun Zhang, Muhammad Aamir Manzoor, Han Wang, Qing Jin, Tao‐Shan Jiang, Yongping Cai, Dahui Li, Yi Lin
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2019.00812

Complete Genome Sequencing and Comparative Genome Characterization of Lactobacillus johnsonii ZLJ010, a Potential Probiotic With Health-Promoting Properties
Cited by: 32
Author(s): Wei Zhang, Jing Wang, Dongyan Zhang, Hui Liu, Sixin Wang, Yamin Wang, Hai‐Feng Ji
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.jmb.2010.11.039

Structural Basis for Langerin Recognition of Diverse Pathogen and Mammalian Glycans through a Single Binding Site
Cited by: 101
Author(s): H. Feinberg, Maureen E. Taylor, Nahid Razi, Ryan McBride, Yuriy A. Knirel, Sarah A. Graham, Kurt Drickamer, William I. Weis
Software Mentions: 1
Published: over 15 years ago

10.3389/fgene.2019.00665

Comparative Genomic Analysis of Three Salmonid Species Identifies Functional Candidate Genes Involved in Resistance to the Intracellular Bacterium Piscirickettsia salmonis
Cited by: 17
Author(s): José M. Yáñez, Grazyella Massako Yoshida, Alicia Lagarto Parra, Katharina Correa, Agustín Barría, Liane N. Bassini, Kris A. Christensen, María Eugenia López, Roberto Carvalheiro, Jean Paul Lhorente, Rodrigo Pulgar
Software Mentions: 1
Published: about 7 years ago

10.1016/j.jmb.2011.01.029

Structure of Rhomboid Protease in a Lipid Environment
Cited by: 81
Author(s): Kutti R. Vinothkumar
Software Mentions: 1
Published: over 15 years ago

10.7554/eLife.34823

Fidaxomicin jams Mycobacterium tuberculosis RNA polymerase motions needed for initiation via RbpA contacts
Cited by: 71
Author(s): Hande Boyaci, James Chen, Mirjana Lilić, Margaret Palka, Rachel A. Mooney, Robert Landick, Seth A Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: over 8 years ago

10.3389/fnhum.2014.00051

Systematic network lesioning reveals the core white matter scaffold of the human brain
Cited by: 42
Author(s): Andrei Irimia, John D. Van Horn
Software Mentions: 1
Published: over 12 years ago

10.1016/j.jmb.2017.08.010

Structures of Leishmania Fructose-1,6-Bisphosphatase Reveal Species-Specific Differences in the Mechanism of Allosteric Inhibition
Cited by: 9
Author(s): Meng Yuan, Montserrat G. Vásquez-Valdivieso, I.W. McNae, Paul A.M. Michels, Linda A. Fothergill‐Gilmore, Malcolm D. Walkinshaw
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.jmb.2007.09.055

Predicting Protein Function from Structure—The Roles of Short-chain Dehydrogenase/Reductase Enzymes in Bordetella O-antigen Biosynthesis
Cited by: 19
Author(s): Jerry D. King, Nicholas J. Harmer, Andrew Preston, Colin M. Palmer, Martin Rejzek, Robert A. Field, Tom L. Blundell, Duncan J. Maskell
Software Mentions: 1
Published: almost 19 years ago

10.3389/fimmu.2017.01859

Public Clonotypes and Convergent Recombination Characterize the Naïve CD8+ T-Cell Receptor Repertoire of Extremely Preterm Neonates
Cited by: 22
Author(s): Alison J. Carey, Jennifer L. Hope, Yvonne M. Mueller, Adam J Fike, Ogan K. Kumova, David B. H. van Zessen, Eric A.P. Steegers, Mirjam van der Burg, Peter D. Katsikis
Software Mentions: 1
Published: over 8 years ago

10.1016/j.jmb.2017.08.007

Studies on the Interaction of the Histone Demethylase KDM5B with Tricarboxylic Acid Cycle Intermediates
Cited by: 26
Author(s): Hanna Tarhonskaya, Radosław P. Nowak, C. Johansson, A. Szykowska, Anthony Tumber, Rebecca L. Hancock, Pauline A. Lang, Emily Flashman, U. Oppermann, Christopher J. Schofield, Akane Kawamura
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2018.01453

Single-Cell Approach to Influenza-Specific CD8+ T Cell Receptor Repertoires Across Different Age Groups, Tissues, and Following Influenza Virus Infection
Cited by: 62
Author(s): Sneha Sant, Ludivine Grzelak, Zhongfang Wang, Angela Pizzolla, Marios Koutsakos, Jane Crowe, Thomas Loudovaris, Stuart I. Mannering, Glen P. Westall, Linda M. Wakim, Jamie Rossjohn, Stéphanie Gras, Michael J. Richards, Jianqing Xu, Paul G. Thomas, Liyen Loh, Thi H. O. Nguyen, Katherine Kedzierska
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2016.01645

PIMMS (Pragmatic Insertional Mutation Mapping System) Laboratory Methodology a Readily Accessible Tool for Identification of Essential Genes in Streptococcus
Cited by: 3
Author(s): Adam Blanchard, Sharon A. Egan, Richard D. Emes, Andrew Warry, James A. Leigh
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.jmb.2011.10.036

Structure of the Glycosyltransferase EryCIII in Complex with its Activating P450 Homologue EryCII
Cited by: 30
Author(s): Martin C. Moncrieffe, M. J. Fernàndez, Dieter Spiteller, Hideki Matsumura, Ben F. Luisi, Peter F. Leadlay
Software Mentions: 1
Published: over 14 years ago

10.3389/fmicb.2019.00482

Streptomyces tirandamycinicus sp. nov., a Novel Marine Sponge-Derived Actinobacterium With Antibacterial Potential Against Streptococcus agalactiae
Cited by: 34
Author(s): Xiaolong Huang, Fan-Dong Kong, Shilei Zhou, Dong Huang, Jing Zheng, Weiming Zhu
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.696588

A High Starch Diet Alters the Composition of the Intestinal Microbiota of Largemouth Bass Micropterus salmoides, Which May Be Associated With the Development of Enteritis
Cited by: 10
Author(s): Xiaoli Huang, Zhong Liu, Qin Kang, Sha Li, Yun Feng, Yi Geng, Defang Chen, Yangping Ou, Shiyong Yang, Lizi Yin, Wei Luo
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.731711

Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium Xanthomonas citri subsp. citri
Cited by: 4
Author(s): Chang‐Jen Huang, Ting-Li Wu, Po Xing Zheng, Jheng-Yang Ou, Hui-Fang Ni, Yao‐Cheng Lin
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2016.00340

Genomic Insights into a New Citrobacter koseri Strain Revealed Gene Exchanges with the Virulence-Associated Yersinia pestis pPCP1 Plasmid
Cited by: 11
Author(s): Fabrice Armougom, Idir Bitam, Olivier Croce, Vicky Merhej, Lina Barassi, Ti-Thien Nguyen, Bernard La Scola, Didier Raoult
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.55966

A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment
Cited by: 31
Author(s): Xinru Wang, Dimitriya H Garvanska, Isha Nasa, Yumi Ueki, Gang Zhang, Arminja N. Kettenbach, Wolfgang Peti, Jakob Nilsson, Rebecca Page
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.21465

Chlamydia trachomatis-containing vacuole serves as deubiquitination platform to stabilize Mcl-1 and to interfere with host defense
Cited by: 55
Author(s): Annette Fischer, Kelly S. Harrison, Y. Ramirez, Daniela Auer, Suvagata Roy Chowdhury, Bhupesh K. Prusty, Florian Sauer, Zoe Dimond, Caroline Kisker, P. Scott Hefty, Thomas Rudel
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.53530

New approach for membrane protein reconstitution into peptidiscs and basis for their adaptability to different proteins
Cited by: 44
Author(s): Gabriella Angiulli, Harveer Singh Dhupar, Hiroshi Suzuki, Irvinder Singh Wason, Franck Duong, Thomas Walz
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01003

Guarani Virophage, a New Sputnik-Like Isolate From a Brazilian Lake
Cited by: 15
Author(s): Saïd Mougari, Meriem Bekliz, Jônatas Santos Abrahão, Fabrizio Di Pinto, Anthony Levasseur, Bernard La Scola
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.03071

Bacteria From the Multi-Contaminated Tinto River Estuary (SW, Spain) Show High Multi-Resistance to Antibiotics and Point to Paenibacillus spp. as Antibiotic-Resistance-Dissemination Players
Cited by: 11
Author(s): Benedito Eduardo-Correia, Héctor Gabriel Morales-Filloy, José Pascual Abad
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.61056

Antibody escape by polyomavirus capsid mutation facilitates neurovirulence
Cited by: 8
Author(s): Matthew D Lauver, Daniel J. Goetschius, Colleen S. Netherby, Katelyn N Ayers, Ge Jin, Daniel G Haas, Elizabeth Frost, Sung Hyun Cho, Carol M. Bator, Stephanie M. Bywaters, Neil D. Christensen, Susan Hafenstein, Aron E. Lukacher
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.00814

Gut Microbiome Influences the Efficacy of PD-1 Antibody Immunotherapy on MSS-Type Colorectal Cancer via Metabolic Pathway
Cited by: 82
Author(s): Xinjian Xu, Ji Lv, Fang Guo, Jing Li, Yitao Jia, Da Jiang, Na Wang, Chao Zhang, Lingyu Kong, Ya-Bin Liu, Yanni Zhang, Jian Lv, Zhongxin Li
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.36758

Structures reveal opening of the store-operated calcium channel Orai
Cited by: 76
Author(s): Xiaowei Hou, Shana R. Burstein, Stephen B. Long
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2016.00251

Genomic Insight into the Host–Endosymbiont Relationship of Endozoicomonas montiporae CL-33T with its Coral Host
Cited by: 72
Author(s): Jun-Ren Ding, Jia Ho Shiu, Wen Ming Chen, Yin-Ru Chiang, Sen Lin Tang
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2019.02040

Tal1NXtc01 in Xanthomonas translucens pv. cerealis Contributes to Virulence in Bacterial Leaf Streak of Wheat
Cited by: 10
Author(s): Syed Mashab Ali Shah, Fazal Haq, Wenxiu Ma, Xiao Xu, Qianqian Wang, Zhi-Hong Xu, Lifang Zou, Bao‐Ku Zhu, Gongyou Chen
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.598285

Isolation, Identification, and Complete Genome Assembly of an Endophytic Bacillus velezensis YB-130, Potential Biocontrol Agent Against Fusarium graminearum
Cited by: 30
Author(s): Wen Xu, Liyong Zhang, Paul H. Goodwin, Mingcong Xia, Jie Zhang, Qi Wang, Juan Boo Liang, Sun Ru, Chao Wu, Lirong Yang
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.24149

Cryo-EM structure of the ATP-sensitive potassium channel illuminates mechanisms of assembly and gating
Cited by: 155
Author(s): Gregory M. Martin, Craig Yoshioka, Emily A. Rex, Jonathan F. Fay, Qing Xie, Matthew R. Whorton, James Z. Chen, Show Ling Shyng
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.02905

Basal Rot of Narcissus: Understanding Pathogenicity in Fusarium oxysporum f. sp. narcissi
Cited by: 8
Author(s): Andrew Taylor, Andrew D. Armitage, Claire Handy, Alison C. Jackson, Michelle T. Hulin, Richard J. Harrison, John P. Clarkson
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.43959

Structure and mechanism of a Hypr GGDEF enzyme that activates cGAMP signaling to control extracellular metal respiration
Cited by: 25
Author(s): Zachary F. Hallberg, Chi Ho Chan, Todd A. Wright, Philip J. Kranzusch, Kevin W. Doxzen, James J Park, Daniel R. Bond, Ming C. Hammond
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.01994

The Pelagic Bacterium Paraphotobacterium marinum Has the Smallest Complete Genome Within the Family Vibrionaceae
Cited by: 3
Author(s): Zhongdong Huang, Zhen Liu, Zongze Shao
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.21137

Elucidation of a four-site allosteric network in fibroblast growth factor receptor tyrosine kinases
Cited by: 35
Author(s): Huaibin Chen, William M. Marsiglia, Min Kyu Cho, Zhifeng Huang, Jingjing Deng, Steven P. Blais, Weiming Gai, Shibani Bhattacharya, Thomas A. Neubert, Nathaniel J. Traaseth, Moosa Mohammadi
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.02098

A Phylogenomic Study of Acanthamoeba polyphaga Draft Genome Sequences Suggests Genetic Exchanges With Giant Viruses
Cited by: 27
Author(s): Nisrine Chelkha, Anthony Levasseur, Pierre Pontarotti, Didier Raoult, Bernard La Scola, Philippe Colson
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2019.02562

Conversion of a recA-Mediated Non-toxigenic Vibrio cholerae O1 Strain to a Toxigenic Strain Using Chitin-Induced Transformation
Cited by: 10
Author(s): Shrestha Sinha-Ray, Meer T. Alam, Satyabrata Bag, J. Glenn Morris, Afsar Ali
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.43204

The cryo-EM structure of a 12-subunit variant of RNA polymerase I reveals dissociation of the A49-A34.5 heterodimer and rearrangement of subunit A12.2
Cited by: 36
Author(s): Lucas Tafur, Yashar Sadian, Jonas Hanske, René Wetzel, Félix Weis, Christoph W. Müller
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2016.00913

Isolation and Genomic Characterization of ‘Desulfuromonas soudanensis WTL’, a Metal- and Electrode-Respiring Bacterium from Anoxic Deep Subsurface Brine
Cited by: 45
Author(s): Jonathan P. Badalamenti, Zarath M. Summers, Chi Ho Chan, Jeffrey A. Gralnick, Daniel R. Bond
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2020.01948

Effects of Continuous Nitrogen Fertilizer Application on the Diversity and Composition of Rhizosphere Soil Bacteria
Cited by: 49
Author(s): Ning Ren, Yang Wang, Youliang Ye, Yanan Zhao, Yufang Huang, Wen Fu, Xv Chu
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.00790

Comparative Genomics Unravels the Functional Roles of Co-occurring Acidophilic Bacteria in Bioleaching Heaps
Cited by: 12
Author(s): Xian Zhang, Xueduan Liu, Yili Liang, Yunhua Xiao, Liyuan Ma, Xue Guo, Bo Miao, Hongwei Liu, Deliang Peng, Wenkun Huang, Huaqun Yin
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.22520

Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA
Cited by: 101
Author(s): Elizabeth A. Hubin, Allison Fay, Catherine K. Xu, James Bean, Ruth M. Saecker, Michael S. Glickman, Seth A. Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.23905

Elucidation of the anti-autophagy mechanism of the Legionella effector RavZ using semisynthetic LC3 proteins
Cited by: 64
Author(s): Aimin Yang, Supansa Pantoom, Yao‐Wen Wu
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.00869

Dynamics Relationship of Phyllosphere and Rhizosphere Bacterial Communities During the Development of Bothriochloa ischaemum in Copper Tailings
Cited by: 5
Author(s): Tong Jia, Yushan Yao, Ruihong Wang, Tiehang Wu, Bo Chai
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.588117

Comparative Analysis of Physicochemical Properties and Microbial Composition in High-Temperature Daqu With Different Colors
Cited by: 57
Author(s): Lei Deng, Xiang Mao, Dan Liu, Xinqiang Ning, Yi Shen, Bo Chen, Hong-Fang Nie, Dan Huang, Huibo Luo
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02608

Emerging Variants of the Integrative and Conjugant Element ICEMh1 in Livestock Pathogens: Structural Insights, Potential Host Range, and Implications for Bacterial Fitness and Antimicrobial Therapy
Cited by: 6
Author(s): Andrew Cameron, Rahat Zaheer, Tim A. McAllister
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.544785

Combined Methylome, Transcriptome and Proteome Analyses Document Rapid Acclimatization of a Bacterium to Environmental Changes
Cited by: 7
Author(s): Abhishek Srivastava, Jayaseelan Murugaiyan, Juan A. L. García, Daniele De Corte, Matthias Hoetzinger, Murat Eravci, Christoph Weise, Yadhu Kumar, Uwe Roesler, Martin W. Hahn, Hans‐Peter Grossart
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.02539

Characterization of Diversity and Probiotic Efficiency of the Autochthonous Lactic Acid Bacteria in the Fermentation of Selected Raw Fruit and Vegetable Juices
Cited by: 33
Author(s): Xinxing Xu, Dongsheng Luo, Yejun Bao, Xiaojun Liao, Jihong Wu
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.39865

Biosynthesis of histone messenger RNA employs a specific 3' end endonuclease
Cited by: 12
Author(s): Ilaria Pettinati, Pawel Grzechnik, Claudia Ribeiro de Almeida, Jürgen Brem, Michael A. McDonough, Somdutta Dhir, Nick J. Proudfoot, Christopher J. Schofield
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.01747

Genomic Surveillance of Ceftriaxone-Resistant Escherichia coli in Western New York Suggests the Extended-Spectrum β-Lactamase blaCTX-M-27 Is Emerging on Distinct Plasmids in ST38
Cited by: 13
Author(s): Heba H. Mostafa, Andrew Cameron, Samantha M. Taffner, Jun Wang, Adel Malek, Ghinwa Dumyati, Dwight J. Hardy, Nicole Pecora
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.44771

The complete structure of the human TFIIH core complex
Cited by: 82
Author(s): B.J. Greber, Daniel B. Toso, Jie Fang, Eva Nogales
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00254

Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes
Cited by: 37
Author(s): Tom Berben, Lex Overmars, Dimitry Y. Sorokin, Gerard Muyzer
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.610698

Anti-Foc RT4 Activity of a Newly Isolated Streptomyces sp. 5–10 From a Medicinal Plant (Curculigo capitulata)
Cited by: 16
Author(s): Tao Yun, Miaoyi Zhang, Dengbo Zhou, Jing Tao, Xiaoping Zang, Defeng Qi, Yufeng Chen, Kai Li, Yanbin Zhao, Wen Tang, Jiaquan Huang, Wei Wang, Jianghui Xie
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.61503

Structure of the human core transcription-export complex reveals a hub for multivalent interactions
Cited by: 38
Author(s): Thomas Pühringer, Ulrich Hohmann, Laura Fin, Belén Pacheco-Fiallos, Ulla Schellhaas, Julius Brennecke, Clemens Plaschka
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.581802

Mechanism of the Potential Therapeutic Candidate Bacillus subtilis BSXE-1601 Against Shrimp Pathogenic Vibrios and Multifunctional Metabolites Biosynthetic Capability of the Strain as Predicted by Genome Analysis
Cited by: 6
Author(s): Dongdong Wang, Jiahui Li, Guoliang Zhu, Kun Zhao, Wenwen Jiang, Haidong Li, Wenjun Wang, Vikash Kumar, Shuanglin Dong, Weiming Zhu, Xiangli Tian
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.00443

A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins
Cited by: 28
Author(s): Charles Coluzzi, Gérard Guédon, Marie‐Dominique Devignes, Chloé Ambroset, Valentin Loux, Thomas Lacroix, Sophie Payot, Nathalie Leblond‐Bourget
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.01030

Bub3 reads phosphorylated MELT repeats to promote spindle assembly checkpoint signaling
Cited by: 196
Author(s): Ivana Primorac, John R. Weir, Elena Chiroli, Fridolin Groß, Ingrid Hoffmann, Suzan van Gerwen, Andrea Ciliberto, Andrea Musacchio
Software Mentions: 1
Published: almost 13 years ago

10.3389/fmicb.2019.02104

Comparative Genomics and Phylogenomic Analysis of the Genus Salinivibrio
Cited by: 17
Author(s): Rafael R. de la Haba, Clara López-Hermoso, Cristina Sánchez‐Porro, Konstantinos T. Konstantinidis, António Ventosa
Software Mentions: 1
Published: almost 7 years ago