Scientific Papers with Software Mentions

10.3390/nu9121307

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization
Cited by: 14
Author(s): Hideaki Shima, Shizuka Masuda, Yasuhiro Date, Amiu Shino, Yuuri Tsuboi, Mizuho Kajikawa, Yoshihiro Inoué, Taisei Kanamoto, Jun Kikuchi
Software Mentions: 4
Published: over 8 years ago

10.3390/vetsci5030077

Estimating the Size of Dog Populations in Tanzania to Inform Rabies Control
Cited by: 20
Author(s): Maganga Sambo, Katie Hampson, Joel Changalucha, Sarah Cleaveland, Tiziana Lembo, Kennedy Lushasi, Eberhard Mbunda, Zacharia Mtema, Lwitiko Sikana, Paul C. D. Johnson
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-021-84647-2

Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)
Cited by: 8
Author(s): Timothy I. Shaw, Li Dong, Liqing Tian, Chenxi Qian, Yu Liu, Bensheng Ju, Anthony A. High, Kanisha Kavdia, Vishwajeeth Pagala, Bridget Shaner, Deqing Pei, John Easton, Laura J. Janke, Shaina N. Porter, Xiaotu Ma, Cheng Cheng, Shondra M. Pruett-Miller, John K. Choi, Jiyang Yu, Junmin Peng, Wei Gu, A. Thomas Look, James R. Downing, Jinghui Zhang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82976-w

Integrated analysis identifies oxidative stress genes associated with progression and prognosis in gastric cancer
Cited by: 29
Author(s): Zhengyuan Wu, Lin Wang, Zhenpei Wen, Jun Yao
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0225899

Diversity of a cytokinin dehydrogenase gene in wild and cultivated barley
Cited by: 3
Author(s): Beata I. Czajkowska, Conor M. Finlay, Glynis Jones, Terence A. Brown
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.65582

Neural correlates of ingroup bias for prosociality in rats
Cited by: 25
Author(s): Inbal Ben-Ami Bartal, Jocelyn Breton, Huanjie Sheng, Kimberly L.P. Long, Stella Chen, Aline Halliday, Justin W. Kenney, Anne L. Wheeler, Paul W. Frankland, Carrie Shilyansky, Karl Deisseroth, Dacher Keltner, Daniela Kaufer
Software Mentions: 4
Published: about 5 years ago

10.3390/ijerph18094836

Categorizing IQOS-Related Twitter Discussions
Cited by: 5
Author(s): Joshua Barker, Julia Vassey, Julia Chen-Sankey, Jon-Patrick Allem, Tess Boley Cruz, Jennifer B. Unger
Software Mentions: 4
Published: over 5 years ago

10.3390/genes11070736

Growth Trajectories in Genetic Subtypes of Prader–Willi Syndrome
Cited by: 4
Author(s): Daisy A. Shepherd, Niels Vos, Susan M Reid, David E. Godler, Angela Guzys, Margarita Moreno‐Betancur, David J. Amor
Software Mentions: 4
Published: about 6 years ago

10.3390/ijerph16203966

Spatial-Temporal Variation of Bacterial Communities in Sediments in Lake Chaohu, a Large, Shallow Eutrophic Lake in China
Cited by: 16
Author(s): Lei Zhang, Yu Cheng, Guang Gao, Jiahu Jiang
Software Mentions: 4
Published: almost 7 years ago

10.3389/fbioe.2015.00028

G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods
Cited by: 8
Author(s): Andrea Manconi, Elias Manca, Marco Moscatelli, Matteo Gnocchi, Alessandro Orro, Giuliano Armano, Luciano Milanesi
Software Mentions: 4
Published: over 11 years ago

10.7554/eLife.66749

Murine muscle stem cell response to perturbations of the neuromuscular junction are attenuated with aging
Cited by: 11
Author(s): Jacqueline Larouche, Mahir Mohiuddin, Jeongmoon J. Choi, Peter Ulintz, Paula Fraczek, Kaitlyn Sabin, Sethuramasundaram Pitchiaya, Sarah J Kurpiers, Jesus A. Castor-Macias, Wenxuan Liu, Robert Louis Hastings, Lemuel A. Brown, James F. Markworth, Kanishka de Silva, Benjamin Levi, Sofía D. Merajver, Gregorio Valdez, Joe V. Chakkalakal, Young C. Jang, Susan V. Brooks, Carlos A. Aguilar
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2012.00252

Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat
Cited by: 86
Author(s): Steven J. Biller, Annika C. Mosier, George F. Wells, Christopher A. Francis
Software Mentions: 4
Published: over 14 years ago

10.1534/g3.116.026914

Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in<i>Glycine soja</i>, the Wild Progenitor of Cultivated Soybeans
Cited by: 39
Author(s): Justin Anderson, Thomas J. Y. Kono, Robert M. Stupar, Michael B. Kantar, Peter L. Morrell
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2105-9-295

Systems biology driven software design for the research enterprise
Cited by: 18
Author(s): John P. Boyle, Christopher C. Cavnor, Sarah Killcoyne, Ilya Shmulevich
Software Mentions: 4
Published: about 18 years ago

10.1371/journal.pone.0236628

Soundscape of green turtle foraging habitats in Fiji, South Pacific
Cited by: 6
Author(s): Elena Papale, Shritika S. Prakash, Shubha S. Singh, A. Batibasaga, Giuseppa Buscaino, Susanna Piovano
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-81507-x

Multiple bacteria associated with the more dysbiotic genitourinary microbiomes in patients with type 2 diabetes mellitus
Cited by: 6
Author(s): Hua Zha, Fengping Liu, Zongxin Ling, Kevin Chang, Jiezuan Yang, Lanjuan Li
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22157834

Individual DNA Methylation Pattern Shifts in Nanoparticles-Exposed Workers Analyzed in Four Consecutive Years
Cited by: 6
Author(s): Andrea Rössnerová, K. Hoňková, Irena Chvojková, Daniela Pelclová, Vladimı́r Ždı́mal, Jaroslav A. Hubacek, Lucie Lischková, Štěpánka Vlčková, Jakub Ondráček, Štěpánka Dvořáčková, Jan Topinka, Pavel Rössner
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-43881-5

Comprehensive and Systematic Analysis of Gene Expression Patterns Associated with Body Mass Index
Cited by: 13
Author(s): Paule V. Joseph, Rosario B. Jaime-Lara, Yupeng Wang, Lichen Xiang, Wendy A. Henderson
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-48916-5

An epigenome-wide analysis of cord blood DNA methylation reveals sex-specific effect of exposure to bisphenol A
Cited by: 25
Author(s): Ryuichi Miura, Atsuko Araki, Machiko Minatoya, Kunio Miyake, Mei Lien Chen, Sumitaka Kobayashi, Chihiro Miyashita, Jun Yamamoto, Tomohiro Matsumura, Mayumi Ishizuka, Takeo Kubota, Reiko Kishi
Software Mentions: 4
Published: almost 7 years ago

10.1186/1755-8794-8-S2-S13

SeedsGraph: an efficient assembler for next-generation sequencing data
Cited by: 2
Author(s): Chuyu Wang, Maozu Guo, Xiaoyan Liu, Yang Liu, Quan Zou
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-020-58711-2

Nucleus accumbens pathways control cell-specific gene expression in the medial prefrontal cortex
Cited by: 5
Author(s): Takatoshi Hikida, Shuhei Yao, Tom Macpherson, Ayumi Fukakusa, Maki Morita, Haruhide Kimura, Keisuke Hirai, Tatsuya Ando, Hiroyoshi Toyoshiba, Akira Sawa
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-50224-x

Network-based method for drug target discovery at the isoform level
Cited by: 6
Author(s): Ma Jun, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Linna Liu, Peng Dai
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-021-95268-0

Potential of rice landraces with strong culms as genetic resources for improving lodging resistance against super typhoons
Cited by: 4
Author(s): Taishin Nomura, Yosuke Seki, Makoto Matsuoka, Kenji Yano, Koki Chigira, Shunsuke Adachi, Francisco J Piñera-Chávez, Matthew Reynolds, Shuichi Ohkubo, Taiichiro Ookawa
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-017-08109-4

Cross-scale habitat structure driven by coral species composition on tropical reefs
Cited by: 35
Author(s): Laura E. Richardson, Nicholas A. J. Graham, Andrew S. Hoey
Software Mentions: 4
Published: about 9 years ago

10.3390/genes11121444

Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes
Cited by: 6
Author(s): Nazeefa Fatima, Anna Petri, Ulf Gyllensten, Lars Feuk, Adam Ameur
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82731-1

Mating system evolution and genetic structure of diploid sexual populations of Cyrtomium falcatum in Japan
Cited by: 0
Author(s): Ryōsuke Imai, Yoshiaki Tsuda, Atsushi Ebihara, Sadamu Matsumoto, Ayumi Tezuka, Atsushi J. Nagano, Ryo Ootsuki, Yasuyuki Watano
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-09566-7

Comparison of musculoskeletal networks of the primate forelimb
Cited by: 13
Author(s): Júlia Molnár, Borja Esteve‐Altava, Campbell Rolian, Rui Diogo
Software Mentions: 4
Published: almost 9 years ago

10.1186/1471-2164-15-474

The human miRNA repertoire of different blood compounds
Cited by: 56
Author(s): Petra Leidinger, Christina Backes, Benjamin Meder, Eckart Meese, Andreas Keller
Software Mentions: 4
Published: about 12 years ago

10.1038/s41598-017-04300-9

Altered miRNA expression network in locus coeruleus of depressed suicide subjects
Cited by: 59
Author(s): Bhaskar Roy, Qingzhong Wang, M. Palkóvits, Gábor Faludi, Yogesh K. Dwivedi
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-017-17337-7

Ensemble Modeling Approach Targeting Heterogeneous RNA-Seq data: Application to Melanoma Pseudogenes
Cited by: 2
Author(s): Enrico Capobianco, Camilo Valdes, Samanta Sarti, Zhijie Jiang, Laura Poliseno, Nicolas F. Tsinoremas
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.64204

Single-PanIN-seq unveils that ARID1A deficiency promotes pancreatic tumorigenesis by attenuating KRAS-induced senescence
Cited by: 5
Author(s): Shou Liu, Wenjian Cao, Yichi Niu, Jiayi Luo, Yanhua Zhao, Zheng Hu, Chenghang Zong
Software Mentions: 4
Published: about 5 years ago

10.3390/jcm8101663

Revealing Associations between Diagnosis Patterns and Acupoint Prescriptions Using Medical Data Extracted from Case Reports
Cited by: 13
Author(s): Cheol Han Kim, Da Eun Yoon, Ye-Seul Lee, Won Jai Jung, Joo Hee Kim, Younbyoung Chae
Software Mentions: 4
Published: almost 7 years ago

10.1186/1471-2229-14-169

RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications
Cited by: 190
Author(s): Lei Wang, Chenlong Cao, Qibin Ma, Qiaoying Zeng, Haifeng Wang, Zhihao Cheng, Genfeng Zhu, Ji Qi, Hong Mā, Hai Nian, Yingxiang Wang
Software Mentions: 4
Published: over 12 years ago

10.1038/srep43315

An inflammatory gene signature distinguishes neurofibroma Schwann cells and macrophages from cells in the normal peripheral nervous system
Cited by: 35
Author(s): Kwangmin Choi, Kakajan Komurov, Jonathan S. Fletcher, Edwin Jousma, José A. Cancelas, Jianqiang Wu, Nancy Ratner
Software Mentions: 4
Published: over 9 years ago

10.2196/14861

An Internet-Based Psychological Intervention With a Serious Game to Improve Vitality, Psychological and Physical Condition, and Immune Function in Healthy Male Adults: Randomized Controlled Trial
Cited by: 3
Author(s): Lemmy Schakel, Dieuwke S. Veldhuijzen, Henriët van Middendorp, Corine Prins, Anne M H F Drittij, Frank Vrieling, Leo G. Visser, Tom H. M. Ottenhoff, Simone A. Joosten, Andrea Evers
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-92155-6

Radiomics side experiments and DAFIT approach in identifying pulmonary hypertension using Cardiac MRI derived radiomics based machine learning models
Cited by: 10
Author(s): Sarv Priya, Tanya Aggarwal, Caitlin Ward, Girish Bathla, Mathews Jacob, Alicia K. Gerke, Eric A. Hoffman, Prashant Nagpal
Software Mentions: 4
Published: about 5 years ago

10.1038/s42003-020-01413-2

A haplotype-led approach to increase the precision of wheat breeding
Cited by: 62
Author(s): Jemima Brinton, Ricardo H. Ramírez-González, James Simmonds, Luzie U. Wingen, Simon Orford, Simon Griffiths, Wheat Genome, Georg Haberer, Manuel Spannagl, Sean Walkowiak, Curtis Pozniak, Cristóbal Uauy
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.29156

Major transcriptional changes observed in the Fulani, an ethnic group less susceptible to malaria
Cited by: 33
Author(s): Jaclyn Quin, Ioana Bujila, Mariama Chérif, Guillaume S. Sanou, Ying Qu, Manijeh Vafa Homann, Anna Rolicka, Sodiomon B. Sirima, Mary A. O’Connell, Andreas Lennartsson, Marita Troye‐Blomberg, Issa Nébié, Ann‐Kristin Östlund Farrants
Software Mentions: 4
Published: almost 9 years ago

10.3389/fvets.2021.611132

Livestock Network Analysis for Rhodesiense Human African Trypanosomiasis Control in Uganda
Cited by: 1
Author(s): Walter Okello, C. Amongi, Dennis Muhanguzi, Ewan T. MacLeod, Charles Waiswa, Alexandra Shaw, Susan C. Welburn
Software Mentions: 4
Published: about 5 years ago

10.1111/acel.13073

Global metabolic profiling to model biological processes of aging in twins
Cited by: 29
Author(s): Bryan Bunning, Kévin Contrepois, Brittany Lee‐McMullen, Gopal Krishna Dhondalay, Wenming Zhang, Dana Tupa, Olivia Raeber, Manisha Desai, Kari Nadeau, M Snyder
Software Mentions: 4
Published: over 6 years ago

10.1002/mpr.1811

The Alcohol Dependence Scale and DSM‐5 alcohol use disorder: Severity ratings correspond insufficiently in older patients
Cited by: 4
Author(s): Anna Mejldal, Kjeld Andersen, Randi Bilberg, Barbara Braun, Michael P. Bogenschutz, Gerhard Bühringer, Anette Søgaard Nielsen, Silke Behrendt
Software Mentions: 4
Published: over 6 years ago

10.3389/frma.2021.742311

Exploring Topics in Bibliometric Research Through Citation Networks and Semantic Analysis
Cited by: 37
Author(s): Cristian Mejía, Mengjia Wu, Yi Zhang, Yuya Kajikawa
Software Mentions: 4
Published: almost 5 years ago

10.1016/j.tine.2019.02.004

Whole-brain white matter organization, intelligence, and educational attainment
Cited by: 33
Author(s): Joe Bathelt, Gaia Scerif, Anna C. Nobre, Duncan E. Astle
Software Mentions: 4
Published: about 7 years ago

10.3389/fpsyg.2019.02448

The Differential Role of Central and Bridge Symptoms in Deactivating Psychopathological Networks
Cited by: 37
Author(s): Daniel Castro, Filipa Ferreira, Inês de Castro, Ana Rita Rodrigues, Marta Correia, Josefina Ribeiro, Tiago Ferreira
Software Mentions: 4
Published: almost 7 years ago

10.1080/20002297.2021.1946316

Microbial characteristics across different tongue coating types in a healthy population
Cited by: 5
Author(s): Hairong Chen, Qingwei Li, Min Li, Sheng Liu, Chensi Yao, Zixiong Wang, Zhixin Zhao, Ping Liu, Fan Yang, Xinjian Li, Jun Wang, Yi-Xin Zeng, Xiaolin Tong
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-75333-w

Expression of NF-κB associated lncRNAs in schizophrenia
Cited by: 13
Author(s): Amin Safa, Elham Badrlou, Shahram Arsang‐Jang, Arezou Sayad, Mohammad Taheri, Soudeh Ghafouri‐Fard
Software Mentions: 4
Published: almost 6 years ago

10.3389/fcimb.2016.00193

Genome-Wide Transcriptional and Post-transcriptional Regulation of Innate Immune and Defense Responses of Bovine Mammary Gland to Staphylococcus aureus
Cited by: 41
Author(s): Lingzhao Fang, Yali Hou, Jinpeng An, Bingjie Li, Mengyuan Song, Xiao Wang, Peter Sørensen, Yichun Dong, Chao Liu, Yachun Wang, Huabin Zhu, Shengli Zhang, Ying Yu
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-017-1790-x

Bayesian Unidimensional Scaling for visualizing uncertainty in high dimensional datasets with latent ordering of observations
Cited by: 13
Author(s): Linh P. Nguyen, Susan Holmes
Software Mentions: 4
Published: almost 9 years ago

10.1534/g3.119.400934

Sexual Selection Does Not Increase the Rate of Compensatory Adaptation to a Mutation Influencing a Secondary Sexual Trait in<i>Drosophila melanogaster</i>
Cited by: 1
Author(s): Christopher H. Chandler, Anna Mammel, Ian Dworkin
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2019.00235

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs
Cited by: 49
Author(s): Cristiane P. G. Calixto, Nikoleta A. Τzioutziou, Allan B. James, Csaba Hornyik, Wenbin Guo, Runxuan Zhang, Hugh G. Nimmo, John W. Brown
Software Mentions: 4
Published: over 7 years ago

10.1002/hep.26414

Proteome‐wide analyses of human hepatocytes during differentiation and dedifferentiation
Cited by: 108
Author(s): Cliff Rowe, Dave T. Gerrard, Roz Jenkins, Andrew Berry, Kesta Durkin, Lars Sundström, Chris Goldring, B. Kevin Park, Neil R. Kitteringham, Karen Piper Hanley, Neil A. Hanley
Software Mentions: 4
Published: about 13 years ago

10.1038/s41598-020-61633-8

MicroRNA hsa-mir-3923 serves as a diagnostic and prognostic biomarker for gastric carcinoma
Cited by: 11
Author(s): Xiaohui Yang, Ze Zhang, Lichao Zhang, Li Zhou
Software Mentions: 4
Published: over 6 years ago

10.1155/2021/3766659

Multiomics Differences in Lung Squamous Cell Carcinoma Patients with High Radiosensitivity Index Compared with Those with Low Radiosensitivity Index
Cited by: 2
Author(s): You Wei Du, Shengtao Yuan, Xibing Zhuang, Qi Zhang, Tiankui Qiao
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.04235

Polycomb- and REST-associated histone deacetylases are independent pathways toward a mature neuronal phenotype
Cited by: 43
Author(s): James C. McGann, Jon A. Oyer, Saurabh Garg, Huilan Yao, Jun Li, Xin Feng, Lujian Liao, John R. Yates, Gail Mandel
Software Mentions: 4
Published: almost 12 years ago

10.1007/s11135-016-0401-7

Partial least squares path modeling using ordinal categorical indicators
Cited by: 78
Author(s): Florian Schuberth, Jörg Henseler, Theo K. Dijkstra
Software Mentions: 4
Published: almost 10 years ago

10.3389/fneur.2020.00773

Computer Modeling of Clot Retrieval—Circle of Willis
Cited by: 6
Author(s): Thanh G. Phan, Henry Ma, Mayank Goyal, James Hilton, Matthew D. Sinnott, Velandai Srikanth, Richard Beare
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/6057948

Identification and Verification of a 17 Immune-Related Gene Pair Prognostic Signature for Colon Cancer
Cited by: 3
Author(s): Qianshi Zhang, Zhen Feng, Yongnian Zhang, Shasha Shi, Yu Zhang, Shuo Ren
Software Mentions: 4
Published: about 5 years ago

10.5334/joc.188

Investigating Reading Comprehension in Adolescents with Intellectual Disabilities: Evaluating the Simple View of Reading
Cited by: 3
Author(s): Karin Nilsson, Henrik Danielsson, Åsa Elwér, David Messer, Lucy A. Henry, Stefan Samuelsson
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.2005359

Comparative genomics and the nature of placozoan species
Cited by: 63
Author(s): Michael Eitel, Warren R. Francis, Frédérique Varoqueaux, Jean Daraspe, Hans-Jürgen Osigus, Stefan Krebs, Sergio Vargas, Helmut Blum, Gray A. Williams, Bernd Schierwater, Gert Wörheide
Software Mentions: 4
Published: about 8 years ago

10.3390/ijerph16183435

A Multi-Center Competing Risks Model and Its Absolute Risk Calculation Approach
Cited by: 1
Author(s): Wang Jin-tao, Zhongshang Yuan, Yi Liu, Fuzhong Xue
Software Mentions: 4
Published: almost 7 years ago

10.18632/oncotarget.15068

Genome-scale analysis identifies GJB2 and ERO1LB as prognosis markers in patients with pancreatic cancer
Cited by: 39
Author(s): Tao Zhu, Yuanfeng Gao, Yixin Chen, Zhibin Wang, Ji‐Ye Yin, Xiao‐Yuan Mao, Xi Li, Wei Zhang, Hong‐Hao Zhou, Zhao‐Qian Liu
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2016.00434

Restructuring of Epibacterial Communities on Fucus vesiculosus forma mytili in Response to Elevated pCO2 and Increased Temperature Levels
Cited by: 26
Author(s): Birte Mensch, Sven C. Neulinger, Angelika Graiff, Andreas Pansch, Sven Künzel, Martin Fischer, Ruth A. Schmitz
Software Mentions: 4
Published: over 10 years ago

10.1111/hex.12545

Closing the patient experience chasm: A two-level validation of the Consumer Quality Index Inpatient Hospital Care
Cited by: 9
Author(s): Alina Smirnova, Kiki M. J. M. H. Lombarts, Onyebuchi A. Arah, Cees van der Vleuten
Software Mentions: 4
Published: over 9 years ago

10.1007/s00330-017-5031-5

Optimising preoperative risk stratification tools for prostate cancer using mpMRI
Cited by: 17
Author(s): Lars Anders Rokne Reisæter, Jurgen J. Fütterer, Are Losnegård, Yngve Nygård, Jan Ankar Monssen, Karsten Gravdal, Ole J. Halvorsen, Lars A. Akslen, Martin Biermann, Svein A. Haukaas, Jarle Rørvik, Christian Beisland
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12885-020-07716-1

The R-enantiomer of ketorolac reduces ovarian cancer tumor burden in vivo
Cited by: 10
Author(s): Martha M. Grimes, S. Ray Kenney, Dayna Dominguez, Kathryn J. Brayer, Yi Guo, Angela Wandinger‐Ness, Laurie G. Hudson
Software Mentions: 4
Published: over 5 years ago

10.1080/19336896.2021.1924557

Transcriptomic analysis of zebrafish prion protein mutants supports conserved cross-species function of the cellular prion protein
Cited by: 1
Author(s): Niall M. Pollock, Patricia L.A. Leighton, Gavin J. Neil, W. Ted Allison
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0216679

Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel
Cited by: 8
Author(s): Fatma Zohra Djazouli Alim, Elena V. Romanova, Yea Ling Tay, Ahmad Yamin bin Abdul Rahman, Kok‐Gan Chan, Kar‐Wai Hong, Mark F. Rogers, Bruce R. Southey, Michael Greenwood, André Souza Mecawi, Mohammad Rais Mustafa, Nicole Mahy, Colin Campbell, José Antunes‐Rodrigues, Jonathan V. Sweedler, David Murphy, Charles C.T. Hindmarch
Software Mentions: 4
Published: about 7 years ago

10.1042/BSR20211241

Multi-omic analyses of hepatocellular carcinoma to determine immunological characteristics and key nodes in gene-expression network
Cited by: 3
Author(s): Zhihui Wang, Shuijun Zhang
Software Mentions: 4
Published: about 5 years ago

10.1002/emmm.201201974

Alteration of the micro <scp>RNA</scp> network during the progression of Alzheimer's disease
Cited by: 393
Author(s): Pierre Lau, Koen Bossers, Rekin’s Janky, Evgenia Salta, Carlo Sala Frigerio, Shahar Barbash, Roy Rothman, Annerieke Sierksma, Amantha Thathiah, David Greenberg, Aikaterini S. Papadopoulou, Tilmann Achsel, Torik Ayoubi, Hermona Soreq, Joost Verhaagen, Dick F. Swaab, Stein Aerts, Bart De Strooper
Software Mentions: 4
Published: almost 13 years ago

10.1186/s12885-015-1179-z

Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma
Cited by: 57
Author(s): Yibin Hao, Wei Wu, Fachun Shi, Rodrigo Juliani Siqueira Dalmolin, Ming Yan, Fei Tian, Xiaobing Chen, Guoyong Chen, Wei Cao
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0194021

Loneliness in schizophrenia: Construct clarification, measurement, and clinical relevance
Cited by: 73
Author(s): Graham M.L. Eglit, Barton W. Palmer, Averria Sirkin Martin, Xin Tu, Dilip V. Jeste
Software Mentions: 4
Published: over 8 years ago

10.1002/cam4.4104

Improving the overall survival prognosis prediction accuracy: A 9‐gene signature in CRC patients
Cited by: 6
Author(s): Wenbo Zheng, Yijia Lu, Xiaochuang Feng, Chuanxin Yang, Ling Qiu, Haijun Deng, Qi Xue, Kai Sun
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.3000908

Modeling flexible behavior in childhood to adulthood shows age-dependent learning mechanisms and less optimal learning in autism in each age group
Cited by: 33
Author(s): Daisy Crawley, Lei Zhang, Emily J. H. Jones, Jumana Ahmad, Bethany Oakley, Antonia San José Cáceres, Tony Charman, Jan K. Buitelaar, Declan Murphy, Christopher H. Chatham, H.E.M. den Ouden, Eva Loth
Software Mentions: 4
Published: almost 6 years ago

10.1093/jxb/eru250

Soil coring at multiple field environments can directly quantify variation in deep root traits to select wheat genotypes for breeding
Cited by: 119
Author(s): Anton Wasson, G. J. Rebetzke, John A. Kirkegaard, Jack Christopher, R. A. Richards, Michelle Watt
Software Mentions: 4
Published: about 12 years ago

10.3389/fpls.2018.00049

Non-parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen
Cited by: 28
Author(s): Coraline R. Praz, Fabrizio Menardo, Mark D. Robinson, Marion Müller, Thomas Wicker, Salim Bourras, Beat Keller
Software Mentions: 4
Published: over 8 years ago

10.1186/s12859-018-2217-z

Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data
Cited by: 175
Author(s): Shuonan Chen, Jessica C. Mar
Software Mentions: 4
Published: about 8 years ago

10.7717/peerj.11074

Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-12-58

Taxon ordering in phylogenetic trees: a workbench test
Cited by: 4
Author(s): Francesco Cerutti, Luigi Bertolotti, Tony L. Goldberg, Mario Giacobini
Software Mentions: 4
Published: over 15 years ago

10.3389/fmicb.2018.00063

Comparative Genomics of Completely Sequenced Lactobacillus helveticus Genomes Provides Insights into Strain-Specific Genes and Resolves Metagenomics Data Down to the Strain Level
Cited by: 47
Author(s): Michael Schmid, Jonathan Muri, Damianos P. Melidis, Adithi R. Varadarajan, Vincent Somerville, Adrian Wicki, Aline Moser, M Bourqui, Claudia Wenzel, Elisabeth Eugster‐Meier, Juerg E. Frey, Stefan Irmler, Christian H. Ahrens
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0243704

Cyberchondria in the age of COVID-19
Cited by: 53
Author(s): Nataša Jokić‐Begić, Anita Lauri Korajlija, Una Mikac
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0254200

Contextualizing goal preferences in fear-avoidance models. Looking at fatigue as a disabling symptom in fibromyalgia patients
Cited by: 5
Author(s): Cecilia Peñacoba, Irene López‐Gómez, María Ángeles Pastor-Mira, Sofía López-Roig, Carmen Écija
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2017.01430

Transcriptomic Analysis Reveals Candidate Genes for Female Sterility in Pomegranate Flowers
Cited by: 32
Author(s): Lina Chen, Jie Zhang, Haoxian Li, Juan Niu, Hui Xue, Beibei Liu, Qi Wang, Xiang Luo, Fuhong Zhang, Dan Zhao, Shangyin Cao
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0248622

Mapping urban greenspace use from mobile phone GPS data
Cited by: 12
Author(s): Meghann Mears, Paul J Brindley, Paul D. Barrows, Miles Richardson, Ravi Maheswaran
Software Mentions: 4
Published: about 5 years ago

10.3389/fpsyg.2019.02081

Training Participants to Focus on Critical Facial Features Does Not Decrease Own-Group Bias
Cited by: 6
Author(s): Tania Wittwer, Colin Tredoux, Jacques Py, Pierre‐Vincent Paubel
Software Mentions: 4
Published: almost 7 years ago

10.3389/fnagi.2019.00099

Newly Developed TV-Based Cognitive Training Games Improve Car Driving Skills, Cognitive Functions, and Mood in Healthy Older Adults: Evidence From a Randomized Controlled Trial
Cited by: 24
Author(s): Rui Nouchi, Akiko Kobayashi, Haruka Nouchi, Ryuta Kawashima
Software Mentions: 4
Published: over 7 years ago

10.1016/j.mex.2020.100941

A novel item-allocation procedure for the three-form planned missing data design
Cited by: 2
Author(s): Kyle M. Lang, E. Whitney G. Moore, Elizabeth Grandfield
Software Mentions: 4
Published: over 6 years ago

10.1192/bjo.2020.93

Interpersonal theory of suicide: prospective examination
Cited by: 17
Author(s): Thomas Forkmann, Heide Glaesmer, Laura Paashaus, Dajana Rath, Antje Schönfelder, Katharina Stengler, Georg Juckel, Hans‐Jörg Assion, Tobias Teismann
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1006520

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: almost 8 years ago

10.1017/S0950268820002782

Chasing the ghost of infection past: identifying thresholds of change during the COVID-19 infection in Spain
Cited by: 11
Author(s): Luis Santamarı́a, Joaquín Hortal
Software Mentions: 4
Published: over 6 years ago

10.1186/s40793-020-00363-w

Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems – focus on the pelagic environment
Cited by: 3
Author(s): Antoine Bagnaro, Federico Baltar, G. Brownstein, William G. Lee, Sergio E. Morales, Daniel W. Pritchard, Christopher D. Hepburn
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0127292

Age Specific Survival Rates of Steller Sea Lions at Rookeries with Divergent Population Trends in the Russian Far East
Cited by: 17
Author(s): Alexey Altukhov, Russel D. Andrews, Donald G. Calkins, Thomas S. Gelatt, Eliezer Gurarie, Thomas R. Loughlin, Evgeny Mamaev, В. С. Никулин, Peter A. Permyakov, Sergey D. Ryazanov, Vladimir V. Vertyankin, Vladimir N. Burkanov
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-021-97337-w

DNA metabarcoding reveals the dietary composition in the endangered black-faced spoonbill
Cited by: 3
Author(s): Pei‐Yu Huang, Emily Shui Kei Poon, Anson Tsz Chun Wong, Ivy Wai Yan So, Yik-Hei Sung, Simon Yung Wa Sin
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1008120

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
Cited by: 62
Author(s): Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina J. Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1006451

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals
Cited by: 9
Author(s): Iksoo Huh, Isabel Mendizabal, Taesung Park, Soojin V. Yi
Software Mentions: 4
Published: almost 8 years ago

10.1186/s41927-019-0078-3

Abstracts of scientific contributions to GCOM 2019
Cited by: 0
Author(s):
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0168168

Vegetation Productivity in Natural vs. Cultivated Systems along Water Availability Gradients in the Dry Subtropics
Cited by: 4
Author(s): Germán Baldi, Marcos Texeira, Francisco Murray, Estéban G. Jobbágy
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0022022

Origin and Evolution of TRIM Proteins: New Insights from the Complete TRIM Repertoire of Zebrafish and Pufferfish
Cited by: 94
Author(s): Pierre Boudinot, Lieke M. van der Aa, Luc Jouneau, Louis Du Pasquier, Pierre Pontarotti, Valérie Briolat, Abdenour Benmansour, Jean‐Pierre Levraud
Software Mentions: 4
Published: about 15 years ago