Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giy080

https://doi.org/10.1093/gigascience/giy080

A workflow for simplified analysis of ATAC-cap-seq data in R

Cited by: 5
Author(s): Ram Krishna Shrestha, Pingtao Ding, Jonathan D. G. Jones, Dan MacLean
Published: over 6 years ago

Software Mentions 4

bioconductor: csaw
ChIP-Seq Analysis with Windows
Papers that mentioned: 29
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233