10.1186/s12915-017-0352-z

The landscape of sex-differential transcriptome and its consequent selection in human adults
Cited by: 180
Author(s): Moran Gershoni, Shmuel Pietrokovski
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-016-2888-7

Comparison of pre-processing methods for multiplex bead-based immunoassays
Cited by: 13
Author(s): Tanja K. Rausch, Arne Schillert, Andreas Ziegler, Angelika Lüking, Hans‐Dieter Zucht, Peter Schulz‐Knappe
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12915-020-00779-3

Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
Cited by: 15
Author(s): Helen Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony Adamson, Craig Taylor, Julia Ding, Vasanthi Priyadarshini Gaddi, Yao Fu, Patrick M. Gaffney, Gisela Orozco, Richard B Warren, Steve Eyre
Software Mentions: 4
Published: over 6 years ago

10.1186/s12915-021-01104-2

A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis
Cited by: 7
Author(s): Ena Šečić, Silvia Zanini, Daniel Wibberg, Lukas Jelonek, Tobias Busche, Jörn Kalinowski, Sabrine Nasfi, Jennifer Thielmann, Jafargholi Imani, Jens Steinbrenner, Karl‐Heinz Kogel
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12915-019-0626-8

Transcriptome, proteome and draft genome of Euglena gracilis
Cited by: 88
Author(s): ThankGod Echezona Ebenezer, Martin Zoltner, Alana Burrell, Anna Nenarokova, Anna M. G. Novák Vanclová, Binod Prasad, Petr Soukal, Carlos Santana-Molina, Ellis C. O’Neill, Nerissa N. Nankissoor, Nithya Vadakedath, Viktor Daiker, Samson O. Obado, Sara Silva Pereira, Andrew P. Jackson, Damien P. Devos, Julius Lukeš, Michael Lebert, Sue Vaughan, Vladimı́r Hampl, Mark Carrington, Michael L. Ginger, Joel B. Dacks, Steven L. Kelly, Mark C. Field
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-21222-2

Prime and Boost Vaccination Elicit a Distinct Innate Myeloid Cell Immune Response
Cited by: 26
Author(s): Jean-Louis Palgen, Nicolas Tchitchek, Jamila Elhmouzi-Younes, Simon Delandre, Inana Namet, Pierre Rosenbaum, Nathalie Dereuddre‐Bosquet, Frédéric Martinon, Antonio Cosma, Yves Lévy, Roger Le Grand, Anne-Sophie Beignon
Software Mentions: 4
Published: over 8 years ago

10.3389/fpls.2020.555071

Inheritance of Rootstock Effects in Avocado (Persea americana Mill.) cv. Hass
Cited by: 19
Author(s): Paula H. Reyes-Herrera, Laura Muñoz-Baena, Valeria Velásquez-Zapata, Laura Patiño, Oscar A. Delgado-Paz, Cipriano A. Díaz-Diez, Alejandro A. Navas-Arboleda, Andrés J. Cortés
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.654657

Discovery and Verification of an Immune-Related Gene Pairs Signature for Predicting Prognosis in Head and Neck Squamous Cell Carcinoma
Cited by: 0
Author(s): Jiarong He, Xinqi Fang, Mingming Han
Software Mentions: 4
Published: about 5 years ago

10.1186/s12920-018-0320-7

Efficient strategy for the molecular diagnosis of intractable early-onset epilepsy using targeted gene sequencing
Cited by: 41
Author(s): John Hoon Rim, Se Hee Kim, In Sik Hwang, Soon Sung Kwon, Jieun Kim, Hyun Woo Kim, Min Jung Cho, Ara Ko, Song Ee Youn, Kim Ji-Hun, Young Mock Lee, Hee Jung Chung, Joon Soo Lee, Heung Dong Kim, Jong Rak Choi, Seung Tae Lee, Hoon Chul Kang
Software Mentions: 4
Published: over 8 years ago

10.1186/s12936-019-3038-x

Changing plasma cytokine, chemokine and growth factor profiles upon differing malaria transmission intensities
Cited by: 6
Author(s): Ruth Aguilar, Joseph J. Campo, Silvia Chicuecue, Pau Cisteró, Alba Català, Leopoldina Luís, Itziar Ubillos, Beatriz Galatas, Pedro Aíde, Caterina Guinovart, Gemma Moncunill, Carlota Dobaño
Software Mentions: 4
Published: over 6 years ago

10.1186/s12898-016-0104-x

A century of morphological variation in Cyprinidae fishes
Cited by: 19
Author(s): Stephen J. Jacquemin, Mark Pyron
Software Mentions: 4
Published: almost 10 years ago

10.1037/met0000337

Power contours: Optimising sample size and precision in experimental psychology and human neuroscience.
Cited by: 96
Author(s): Daniel H. Baker, Greta Vilidaitė, Freya Lygo, Anika Smith, Tessa R. Flack, André Gouws, Timothy J. Andrews
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-020-3484-z

Short paired-end reads trump long single-end reads for expression analysis
Cited by: 13
Author(s): Adam H. Freedman, John Gaspar, Timothy B. Sackton
Software Mentions: 4
Published: over 6 years ago

10.1186/s12885-020-07513-w

Ovarian cancer cells direct monocyte differentiation through a non-canonical pathway
Cited by: 5
Author(s): Kaitlin C. Fogg, Andrew Miller, Ying Liu, Will Flanigan, Alyssa Walker, Amy O'Shea, Christina Kendziorski, Pamela K. Kreeger
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12859-020-3450-9

Data-based RNA-seq simulations by binomial thinning
Cited by: 19
Author(s): David Gerard
Software Mentions: 4
Published: about 6 years ago

10.1186/s13287-019-1245-6

DNA methylation dynamic of bone marrow hematopoietic stem cells after allogeneic transplantation
Cited by: 13
Author(s): Stefania Trino, Pietro Zoppoli, Angelo Michele Carella, Ilaria Laurenzana, Alessandro Weisz, Domenico Memoli, Giovanni Calice, Francesco La Rocca, Vittorio Simeon, Lucia Savino, Luigi Del Vecchio, Pellegrino Musto, Antonella Caivano, Luciana De Luca
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-019-2623-x

MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations
Cited by: 2
Author(s): Aleksandra Perz, Cory B. Giles, Chase A. Brown, Hunter Porter, Xiavan Roopnarinesingh, Jonathan D. Wren
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-93616-8

MicroRNA-378a-3p is overexpressed in psoriasis and modulates cell cycle arrest in keratinocytes via targeting BMP2 gene
Cited by: 7
Author(s): Wipasiri Soonthornchai, Pattarin Tangtanatakul, Kornvalee Meesilpavikkai, Virgil A. S. H. Dalm, Patipark Kueanjinda, Jongkonnee Wongpiyabovorn
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.00861

Sample Processing Methods Impacts on Rumen Microbiome
Cited by: 10
Author(s): Gonzalo Martínez Fernández, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2018.03183

Iron Regulation in Clostridioides difficile
Cited by: 42
Author(s): Mareike Berges, Annika-Marisa Michel, Christian Lassek, Aaron M. Nuss, Michael Beckstette, Petra Dersch, Katharina Riedel, Susanne Sievers, Dörte Becher, Andreas Otto, Sandra Maaß, Manfred Rohde, Denitsa Eckweiler, José Manuel Borrero‐de Acuña, Martina Jahn, Meina Neumann‐Schaal, Dieter Jahn
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2016.02125

Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System
Cited by: 36
Author(s): Aaron A. Best, Amanda Porter, Susan M. Fraley, Gregory S. Fraley
Software Mentions: 4
Published: over 9 years ago

10.1007/s00253-019-09904-x

Effect of ethanol supplementation on the transcriptional landscape of bionanocellulose producer Komagataeibacter xylinus E25
Cited by: 30
Author(s): Małgorzata Ryngajłło, Paulina Jacek, Izabela Cielecka, Halina Kalinowska, Stanisław Bielecki
Software Mentions: 4
Published: about 7 years ago

10.1111/tgis.12657

CityJSON in QGIS: Development of an open‐source plugin
Cited by: 13
Author(s): Stelios Vitalis, Ken Arroyo Ohori, J.E. Stoter
Software Mentions: 4
Published: about 6 years ago

10.1186/s42523-021-00076-6

Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets
Cited by: 23
Author(s): Kasun H. Bodawatta, Inga Freiberga, Kateřina Pužejová, Kateřina Sam, Michael Poulsen, Knud A. Jønsson
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0252987

Morus alba: Host reaction for Meloidogyne javanica, biological nematicides assessment and study of these relationships with yield and quality of leaves, cocoon and health of the silkworm
Cited by: 0
Author(s): Santino Aleandro da Silva, Renata da Rosa, Rachel Colauto Milanezi Aguiar, Cristianne Cordeiro Nascimento, Andressa Cristina Zamboni Machado
Software Mentions: 4
Published: about 5 years ago

10.1177/0272989X17696997

A Procedure for Deriving Formulas to Convert Transition Rates to Probabilities for Multistate Markov Models
Cited by: 20
Author(s): Emrys A. Jones, David Epstein, Leticia García-Mochón
Software Mentions: 4
Published: over 9 years ago

10.1098/rsob.200253

The role of antioxidants in restoring MAPK 14 and a DNA damage marker level following autophagy suppression
Cited by: 3
Author(s): Abdalla Elbialy
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22010275

The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function
Cited by: 8
Author(s): Yashwanth Subbannayya, Markus Haug, Sneha M. Pinto, Varshasnata Mohanty, Hany Zakaria Meås, Trude Helen Flo, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.586820

Tumor Derived SIGLEC Family Genes May Play Roles in Tumor Genesis, Progression, and Immune Microenvironment Regulation
Cited by: 14
Author(s): Chen Zheng, Ming Yu, Lei Guo, Bo Zhang, Shuang Liu, Wentao Zhang, Bing Zhou, Jiuliang Yan, Qianni Ma, Zhixu Yang, Xiao Ye, Yongfeng Xu, Hui Li, Qing–Hai Ye
Software Mentions: 4
Published: over 5 years ago

10.15252/embj.2020105784

ALK ligand ALKAL2 potentiates MYCN‐driven neuroblastoma in the absence of <i>ALK</i> mutation
Cited by: 30
Author(s): Marcus Borenäs, Ganesh Umapathy, Wei-Yun Lai, Dan E. Lind, Barbara Witek, Jikui Guan, Patricia Mendoza-García, Tafheem Masudi, A. Claeys, Tzu-Po Chuang, Abeer El Wakil, Badrul Arefin, Susanne Fransson, Jan Koster, Mathias Johansson, Jennie Gaarder, Jimmy Van den Eynden, Bengt Hållberg, Ruth Palmer
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0197170

Context-dependent consumer control in New England tidal wetlands
Cited by: 3
Author(s): Alexandria C. Moore
Software Mentions: 4
Published: about 8 years ago

10.3389/fvets.2021.703473

Economic Considerations for Advancement Through the Progressive Control Pathway: Cost–Benefit Analysis of an FMD Disease-Free Zone in Punjab Province, Pakistan
Cited by: 1
Author(s): Nicholas A. Lyons, M. Afzal, Farrukh Toirov, A. Irshad, C.J.M. Bartels, Jonathan Rushton
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12864-019-5444-4

The plastid and mitochondrial genomes of Eucalyptus grandis
Cited by: 31
Author(s): Desré Pinard, Alexander Andrew Myburg, Eshchar Mizrachi
Software Mentions: 4
Published: over 7 years ago

10.1038/s42003-020-01233-4

A gene prioritization method based on a swine multi-omics knowledgebase and a deep learning model
Cited by: 28
Author(s): Yuhua Fu, Jingya Xu, Zhenshuang Tang, Lu Wang, Yin Ding, Yu Fan, Dongdong Zhang, Fei Deng, Yanping Zhang, Haohao Zhang, Haiyan Wang, Wenhui Xing, Lilin Yin, Shilin Zhu, Mengjin Zhu, Mei Yu, Xinyun Li, Xiaolei Liu, Xiaohui Yuan, Zhao Song
Software Mentions: 4
Published: almost 6 years ago

10.3390/foods10092061

Comparison of Automated Extraction Techniques for Volatile Analysis of Whole Milk Powder
Cited by: 17
Author(s): Ziqiang Cheng, David T. Mannion, Maurice G. O’Sullivan, Song Miao, Joseph P. Kerry, Kieran N. Kilcawley
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41419-017-0173-6

Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation
Cited by: 22
Author(s): Yanjian Li, Yi He, Zhengyu Liang, Yang Wang, Fengling Chen, Mohamed Nadhir Djekidel, Guipeng Li, Xu Zhang, Shuqin Xiang, Zejun Wang, Juntao Gao, Michael Q. Zhang, Chen Yang
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-72818-6

Detection of genomic alterations in breast cancer with circulating tumour DNA sequencing
Cited by: 6
Author(s): Dimitrios Kleftogiannis, David Ho, Jun Xian Liew, Polly Poon, Anna Gan, Raymond Ng, Benita Kiat‐Tee Tan, Kiang Hiong Tay, Swee Ho Lim, Gek San Tan, Chih Chuan Shih, Tony Kiat-Hon Lim, Ann Siew‐Gek Lee, Iain Beehuat Tan, Yoon Sim Yap, Sarah Ng
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-73515-0

Preliminary insights into the impact of primary radiochemotherapy on the salivary microbiome in head and neck squamous cell carcinoma
Cited by: 15
Author(s): Christina Kumpitsch, Christine Moissl-Eichinger, Jakob Pock, Dietmar Thurnher, Axel Wolf
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12967-021-02870-x

High copy number variations, particular transcription factors, and low immunity contribute to the stemness of prostate cancer cells
Cited by: 9
Author(s): Zao Dai, Ping Liu
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2021.633396

The Sputum Microbiome in Pulmonary Tuberculosis and Its Association With Disease Manifestations: A Cross-Sectional Study
Cited by: 8
Author(s): Monica R. Ticlla, Jerry Hella, Hellen Hiza, Mohamed Sasamalo, Francis Mhimbira, Liliana K. Rutaihwa, Sara Droz, Sarah Schaller, Klaus Reither, Markus Hilty, Iñaki Comas, Christian Beisel, Christoph D. Schmid, Lukas Fenner, Sébastien Gagneux
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0253989

Evaluating extraction methods to study canine urine microbiota
Cited by: 7
Author(s): Ryan Mrofchak, Christopher Madden, Morgan V. Evans, Vanessa L. Hale
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9010030

New Insights into the Ecology and Physiology of Methanomassiliicoccales from Terrestrial and Aquatic Environments
Cited by: 17
Author(s): Marc Cozannet, Guillaume Borrel, Erwan G. Roussel, Yann Moalic, Maxime Allioux, Sanvoisin Amandine, Laurent Toffin, Karine Alain
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1007133

Genome wide comparison of Ethiopian Leishmania donovani strains reveals differences potentially related to parasite survival
Cited by: 38
Author(s): Arie Zackay, James A. Cotton, Mandy Sanders, Asrat Hailu, Abedelmajeed Nasereddin, Alon Warburg, Charles L. Jaffe
Software Mentions: 4
Published: over 8 years ago

10.1186/s12859-018-2081-x

Control procedures and estimators of the false discovery rate and their application in low-dimensional settings: an empirical investigation
Cited by: 18
Author(s): Regina Brinster, Anna Köttgen, Bamidele O. Tayo, Martin Schumacher, Peggy Sekula
Software Mentions: 4
Published: over 8 years ago

10.3390/insects12020097

Anopheles gambiae Genome Conservation as a Resource for Rational Gene Drive Target Site Selection
Cited by: 8
Author(s): Nace Kranjc, Andrea Crisanti, Tony Nolan, Federica Bernardini
Software Mentions: 4
Published: over 5 years ago

10.1002/fsn3.1312

Functional approach and agro‐climatic information to improve the estimation of olive oil fatty acid content from near‐infrared data
Cited by: 5
Author(s): María Isabel Sánchez‐Rodríguez, Elena Sánchez‐López, Alberto Marinas, Francisco J. Urbano, José M. Caridad
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.8917

Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma
Cited by: 131
Author(s): Ikhlak Ahmed, Thasni Karedath, Simeon Andrews, Iman K. Al-Azwani, Yasmin Ali Mohamoud, Denis Querleu, Arash Rafii, Joel A. Malek
Software Mentions: 4
Published: over 10 years ago

10.3390/ijms21165847

Deep Learning Modeling of Androgen Receptor Responses to Prostate Cancer Therapies
Cited by: 11
Author(s): Oliver Snow, Nada Lallous, Martin Ester, Artem Cherkasov
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2020.615122

The Price of the Induced Defense Against Pests: A Meta-Analysis
Cited by: 19
Author(s): Alejandro Dorado García, Manuel Martínez, Isabel Dı́az, M. Estrella Santamaría
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms19103265

Distinct Signatures of Host Defense Suppression by Plant-Feeding Mites
Cited by: 19
Author(s): Bernardus C. J. Schimmel, Juan M. Alba, Nicky Wybouw, Joris J. Glas, Tomas Meijer, Robert C. Schuurink, Merijn R. Kant
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-33671-w

Disentangling direct and indirect effects of water availability, vegetation, and topography on avian diversity
Cited by: 12
Author(s): Vladimír Remeš, Lenka Harmáčková
Software Mentions: 4
Published: almost 8 years ago

10.7554/eLife.56554

Cytotoxic T cells swarm by homotypic chemokine signalling
Cited by: 32
Author(s): Jorge Luis Galeano Niño, Sophie V. Pageon, Szun S. Tay, Feyza Colakoglu, Daryan Kempe, Jack D. Hywood, Jessica K Mazalo, James Cremasco, Matt Govendir, Laura F. Dagley, Ku‐Lung Hsu, Simone Rizzetto, Jerzy Zieba, Gregory Rice, Victoria Prior, Geraldine M. O’Neill, Richard J. Williams, David R. Nisbet, Belinda Kramer, Andrew I. Webb, Fabio Luciani, Mark Read, Maté Biro
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-65535-7

Liver colour scoring index, carotenoids and lipid content assessment as a proxy for lumpfish (Cyclopterus lumpus L.) health and welfare condition
Cited by: 15
Author(s): Kirstin Eliasen, Esbern J. Patursson, Bruce J. McAdam, Enrique J. del Pino, Bernat Morro, Mónica B. Betancor, Johanna L. Baily, Sónia Rey
Software Mentions: 4
Published: about 6 years ago

10.1186/s12284-020-00404-5

Phenotyping Root Systems in a Set of Japonica Rice Accessions: Can Structural Traits Predict the Response to Drought?
Cited by: 15
Author(s): P. H. R. Guimarães, Isabela Pereira de Lima, Adriano Pereira de Castro, Anna Cristina Lanna, P. G. S. Melo, Marcel De Raı̈ssac
Software Mentions: 4
Published: almost 6 years ago

10.1038/sdata.2018.154

Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments
Cited by: 73
Author(s): Paul M. Berube, Steven J. Biller, Thomas Hackl, Brandon M. Satinsky, Jamie W. Becker, Rogier Braakman, Sara B. Collins, Libusha Kelly, Jessie W Berta-Thompson, Allison Coe, Kristin Bergauer, Heather A. Bouman, Thomas J. Browning, Daniele De Corte, Christel Hassler, Yotam Hulata, Jeremy E. Jacquot, Elizabeth W. Maas, Thomas Reinthaler, Eva Sintes, Taichi Yokokawa, Debbie Lindell, Ramunas Stepanauskas, Sallie W. Chisholm
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2021.684233

Maternal Antibiotic Treatment Disrupts the Intestinal Microbiota and Intestinal Development in Neonatal Mice
Cited by: 8
Author(s): Chung-Ming Chen, Hsiu Chu Chou, Yu Yang
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.8885

Reduced fish diversity despite increased fish biomass in a Gulf of California Marine Protected Area
Cited by: 5
Author(s): Georgina Ramírez‐Ortiz, Héctor Reyes‐Bonilla, Eduardo F. Balart, Damien Olivier, Leonardo Huato‐Soberanis, Fiorenza Micheli, Graham J. Edgar
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-40883-1

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315
Cited by: 13
Author(s): Jonna Teikari, Rafael Vicentini Popin, Songjun Hou, Matti Wahlsten, Wolfgang R. Hess, Kaarina Sivonen
Software Mentions: 4
Published: over 7 years ago

10.1186/s12866-021-02159-5

Azithromycin and the microbiota of cystic fibrosis sputum
Cited by: 10
Author(s): Nicole Acosta, Christina S. Thornton, Michael G. Surette, Ranjani Somayaji, Laura Rossi, Harvey Rabin, Michael D. Parkins
Software Mentions: 4
Published: over 5 years ago

10.1186/s13073-021-00944-5

Transfer learning between preclinical models and human tumors identifies a conserved NK cell activation signature in anti-CTLA-4 responsive tumors
Cited by: 10
Author(s): Emily F. Davis-Marcisak, Allison A. Fitzgerald, Michael Kessler, Ludmila Danilova, Elizabeth M. Jaffee, Neeha Zaidi, Louis M. Weiner, Elana J. Fertig
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12911-020-01373-x

Computational analysis to repurpose drugs for COVID-19 based on transcriptional response of host cells to SARS-CoV-2
Cited by: 18
Author(s): Fuhai Li, Andrew P. Michelson, Randi E. Foraker, Ming Zhan, Philip R. O. Payne
Software Mentions: 4
Published: over 5 years ago

10.1111/acel.12479

Characterization of the direct targets of <scp>FOXO</scp> transcription factors throughout evolution
Cited by: 158
Author(s): Ashley E. Webb, Anshul Kundaje, Anne Brunet
Software Mentions: 4
Published: over 10 years ago

10.2196/21222

Predictive Models for Neonatal Follow-Up Serum Bilirubin: Model Development and Validation
Cited by: 2
Author(s): Joseph H. Chou
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2019.00347

Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches
Cited by: 49
Author(s): Logan M. Peoples, Eleanna Grammatopoulou, Michelle Pombrol, Xu Xin, Oladayo Osuntokun, Jessica M. Blanton, Eric E. Allen, Clifton C. Nunnally, Jeffrey C. Drazen, Daniel J. Mayor, Douglas H. Bartlett
Software Mentions: 4
Published: over 7 years ago

10.15252/msb.20209946

The transcriptome dynamics of single cells during the cell cycle
Cited by: 28
Author(s): Daniel Schwabe, Sara Formichetti, Jan Philipp Junker, Martin Falcke, Nikolaus Rajewsky
Software Mentions: 4
Published: almost 6 years ago

10.1136/annrheumdis-2020-217646

Unique expansion of IL-21+ Tfh and Tph cells under control of ICOS identifies Sjögren’s syndrome with ectopic germinal centres and MALT lymphoma
Cited by: 75
Author(s): Elena Pontarini, William Murray-Brown, Cristina Croia, Davide Lucchesi, James Conway, Felice Rivellese, Liliane Fossati-Jimack, Elisa Astorri, Edoardo Prediletto, Elisa Corsiero, Francesca Romana Delvecchio, Rachel Coleby, Eva Gelbhardt, Aurora Bono, Chiara Baldini, Ilaria Puxeddu, Piero Ruscitti, Roberto Giacomelli, Francesca Barone, Benjamin A Fisher, Simon Bowman, Serena Colafrancesco, Roberta Priori, Nurhan Sutcliffe, S. J. Challacombe, Gianluca Carlesso, Anwar R. Tappuni, Costantino Pitzalis, Michèle Bombardieri
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.13087

Transcription-coupled genetic instability marks acute lymphoblastic leukemia structural variation hotspots
Cited by: 33
Author(s): Merja Heinäniemi, Tapio Vuorenmaa, Susanna Teppo, Minna U. Kaikkonen, Maria Bouvy-Liivrand, Juha Mehtonen, Henri Niskanen, Vasilios Zachariadis, Saara Laukkanen, Thomas Liuksiala, Kaisa Teittinen, Olli Lohi
Software Mentions: 4
Published: about 10 years ago

10.7554/eLife.36666

Neolithic and medieval virus genomes reveal complex evolution of hepatitis B
Cited by: 94
Author(s): Ben Krause‐Kyora, Julian Susat, Felix M. Key, Denise Kühnert, Esther Bosse, Alexander Immel, Christoph Rinne, Sabin-Christin Kornell, Diego Yepes, Sören Franzenburg, Henrike O. Heyne, Thomas Meier, Sandra Lösch, Harald Meller, Susanne Friederich, Nicole Nicklisch, Kurt W. Alt, Stefan Schreiber, Andreas Tholey, Alexander Herbig, Almut Nebel, Johannes Krause
Software Mentions: 4
Published: over 8 years ago

10.1186/s12870-014-0276-5

Populus tremula (European aspen) shows no evidence of sexual dimorphism
Cited by: 46
Author(s): Kathryn M. Robinson, Nicolas Delhomme, Niklas Mähler, Bastian Schiffthaler, Jenny Önskog, Benedicte Riber Albrectsen, Pär K. Ingvarsson, Torgeir R. Hvidsten, Stefan Jansson, Nathaniel R. Street
Software Mentions: 4
Published: almost 12 years ago

10.3389/fmicb.2021.639997

Identifying the Specific Root Microbiome of the Hyperaccumulator Noccaea brachypetala Growing in Non-metalliferous Soils
Cited by: 0
Author(s): Soledad Martos, John Danku, Laura Pérez‐Martín, Mercè Llugany, Catalina Cabot, Charlotte Poschenrieder
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-8-146

Analysis of probe level patterns in Affymetrix microarray data
Cited by: 15
Author(s): A. Cambon, Abdelnaby Khalyfa, Nigel G. F. Cooper, Caryn M. Thompson
Software Mentions: 4
Published: over 19 years ago

10.3390/s121115159

Ubiquitous Monitoring of Electrical Household Appliances
Cited by: 21
Author(s): Jaime Lloret, Elsa M. Macías, Álvaro Suárez, Raquel Lacuesta
Software Mentions: 4
Published: almost 14 years ago

10.1038/s41597-021-01017-3

Chromosome-scale genome sequencing, assembly and annotation of six genomes from subfamily Leishmaniinae
Cited by: 5
Author(s): Hatim Almutairi, Michael D. Urbaniak, Michelle Bates, Narissara Jariyapan, Godwin Kwakye-Nuako, Vanete Thomaz Soccol, Waleed S. Al-Salem, Rod J. Dillon, Paul A. Bates, Derek Gatherer
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0141719

Potential Compounds for Oral Cancer Treatment: Resveratrol, Nimbolide, Lovastatin, Bortezomib, Vorinostat, Berberine, Pterostilbene, Deguelin, Andrographolide, and Colchicine
Cited by: 37
Author(s): Saurabh Bundela, Anjana Sharma, Prakash S. Bisen
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0237749

A systematic review of fuzzing based on machine learning techniques
Cited by: 26
Author(s): Yan Wang, Peng Jia, Luping Liu, Cheng Huang, Zhonglin Liu
Software Mentions: 4
Published: almost 6 years ago

10.1007/s10552-021-01453-x

Prostate cancer survival in sub-Saharan Africa by age, stage at diagnosis, and human development index: a population-based registry study
Cited by: 10
Author(s): Tobias Paul Seraphin, Walburga Yvonne Joko‐Fru, Shyam Shunker Manraj, Eric Chokunonga, Nontuthuzelo Somdyala, Anne Korir, Guy N’da, Anne Finesse, Henry Wabinga, Mathewos Assefa, Freddy Gnangnon, Rasmus Hvass Hansen, Nathan Buziba, Biying Liu, Eva Johanna Kantelhardt, Donald Maxwell Parkin
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0226207

Individual variation in migratory movements of chinstrap penguins leads to widespread occupancy of ice-free winter habitats over the continental shelf and deep ocean basins of the Southern Ocean
Cited by: 14
Author(s): Jefferson T. Hinke, María M. Santos, Małgorzata Korczak−Abshire, Gennadi Milinevsky, George M. Watters
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0215465

FDG PET based prediction of response in head and neck cancer treatment: Assessment of new quantitative imaging features
Cited by: 18
Author(s): Reinhard Beichel, Ethan Ulrich, Brian J. Smith, Christian Bauer, Bruce P. Brown, Thomas L. Casavant, John Sunderland, Michael M. Graham, John M. Buatti
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-90431-z

Polymerized albumin restores impaired hemodynamics in endotoxemia and polymicrobial sepsis
Cited by: 5
Author(s): Donald Belcher, Alexander T. Williams, Andre F. Palmer, Pedro Cabrales
Software Mentions: 4
Published: about 5 years ago

10.15252/embr.201948882

Mitochondrial protein biogenesis in the synapse is supported by local translation
Cited by: 56
Author(s): Bożena Kuźniewska, Dominik Cysewski, Michał Wasilewski, Paulina Sakowska, Jacek Miłek, Tomasz M. Kuliński, M. Winiarski, Paweł Kozielewicz, Ewelina Knapska, Michał Dadlez, Agnieszka Chacińska, Andrzej Dziembowski, Magdalena Dziembowska
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0187625

RNA-Seq analysis reveals insight into enhanced rice Xa7-mediated bacterial blight resistance at high temperature
Cited by: 46
Author(s): Stephen P. Cohen, Hongxia Liu, Cristiana T. Argueso, Andy Pereira, Casiana Vera Cruz, Valérie Verdier, Jan E. Leach
Software Mentions: 4
Published: almost 9 years ago

10.1126/sciimmunol.abe1670

MAIT cell activation and dynamics associated with COVID-19 disease severity
Cited by: 138
Author(s): Tiphaine Parrot, Jean‐Baptiste Gorin, Andrea Ponzetta, Kimia T. Maleki, Tobias Kammann, Johanna Emgård, André Perez‐Potti, Takuya Sekine, Olga Rivera‐Ballesteros, Sara Gredmark‐Russ, Olav Rooyackers, Elin Folkesson, Lars Eriksson, Anna Norrby‐Teglund, Hans‐Gustaf Ljunggren, Niklas K. Björkström, Soo Aleman, Marcus Buggert, Jonas Klingström, Kristoffer Strålin, Johan K. Sandberg
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-63764-4

SEER and Gene Expression Data Analysis Deciphers Racial Disparity Patterns in Prostate Cancer Mortality and the Public Health Implication
Cited by: 7
Author(s): Wensheng Zhang, Yan Dong, Oliver Sartor, Erik K. Flemington, Kun Zhang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0249583

Innovation indicators based on firm websites—Which website characteristics predict firm-level innovation activity?
Cited by: 8
Author(s): Janna Axenbeck, Patrick Breithaupt
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.50901

A genetic, genomic, and computational resource for exploring neural circuit function
Cited by: 151
Author(s): Fred P. Davis, Aljoscha Nern, Serge Picard, Michael B. Reiser, Gerald M. Rubin, Sean R. Eddy, Gilbert L. Henry
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pbio.2000942

The Global Distribution and Drivers of Alien Bird Species Richness
Cited by: 124
Author(s): Ellie E. Dyer, Phillip Cassey, David W. Redding, Ben Collen, Victoria R. Franks, Kevin J. Gaston, Kate E. Jones, Salit Kark, C. David L. Orme, Tim M. Blackburn
Software Mentions: 4
Published: over 9 years ago

10.1007/s10278-018-0081-z

IoT in Radiology: Using Raspberry Pi to Automatically Log Telephone Calls in the Reading Room
Cited by: 9
Author(s): Po-Hao Chen, Nathan M. Cross
Software Mentions: 4
Published: over 8 years ago

10.1186/s40064-016-1675-x

Epidemic model for information diffusion in web forums: experiments in marketing exchange and political dialog
Cited by: 51
Author(s): Jiyoung Woo, Hsinchun Chen
Software Mentions: 4
Published: over 10 years ago

10.1186/s12864-018-4632-y

Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils
Cited by: 18
Author(s): Marcella Sabino, Victor Adriano Okstoft Carmelo, Gianluca Mazzoni, Katia Cappelli, Stefano Capomaccio, Paolo Ajmone‐Marsan, Andrea Verini-Supplizi, Massimo Trabalza‐Marinucci, Haja N. Kadarmideen
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.266

Analyzing machupo virus-receptor binding by molecular dynamics simulations
Cited by: 9
Author(s): Austin G. Meyer, Sara L. Sawyer, Andrew D. Ellington, Claus O. Wilke
Software Mentions: 4
Published: over 12 years ago

10.1186/1471-2105-15-76

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
Cited by: 185
Author(s): Simon Roux, Jérémy Tournayre, Antoine Mahul, Didier Debroas, François Enault
Software Mentions: 4
Published: over 12 years ago

10.7554/eLife.62456

Salivary and plasmatic oxytocin are not reliable trait markers of the physiology of the oxytocin system in humans
Cited by: 38
Author(s): Daniel Martins, Anthony S. Gabay, Mitul A. Mehta, Yannis Paloyelis
Software Mentions: 4
Published: over 5 years ago

10.1016/j.stem.2020.06.020

Inflammatory Signals Induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration
Cited by: 251
Author(s): Jinwook Choi, Jong-Eun Park, Georgia Tsagkogeorga, Motoko Yanagita, Bon‐Kyoung Koo, Namshik Han, Joo Hyeon Lee
Software Mentions: 4
Published: almost 6 years ago

10.1093/gigascience/gix061

A recurrence-based approach for validating structural variation using long-read sequencing technology
Cited by: 20
Author(s): Xuefang Zhao, Alexandra M. Weber, Ryan E. Mills
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0144359

Beyond Axillary Lymph Node Metastasis, BMI and Menopausal Status Are Prognostic Determinants for Triple-Negative Breast Cancer Treated by Neoadjuvant Chemotherapy
Cited by: 25
Author(s): Hélène Bonsang-Kitzis, Léonor Chaltier, Lisa Belin, Alexia Savignoni, Roman Rouzier, Marie‐Paule Sablin, Florence Lerebours, François-Clément Bidard, Paul Cottu, Xavier Sastre-Garau, Marick Laé, Jean‐Yves Pierga, Fabien Reyal
Software Mentions: 4
Published: over 10 years ago

10.18632/aging.103442

TCF7L2 rs290487 C allele aberrantly enhances hepatic gluconeogenesis through allele-specific changes in transcription and chromatin binding
Cited by: 4
Author(s): Xueyou Zhang, Panpan Ye, Haitao Huang, Baohong Wang, Fengqin Dong, Qi Ling
Software Mentions: 4
Published: about 6 years ago

10.1111/tpj.14466

Multi‐targeting of viral RNAs with synthetic <i>trans</i>‐acting small interfering RNAs enhances plant antiviral resistance
Cited by: 32
Author(s): Alberto Carbonell, Purificación Lisón, José‐Antonio Daròs
Software Mentions: 4
Published: almost 7 years ago

10.3389/fnins.2021.626723

Beta and Theta Oscillations Correlate With Subjective Time During Musical Improvisation in Ecological and Controlled Settings: A Single Subject Study
Cited by: 5
Author(s): Nicolas Farrugia, Alix Lamouroux, Christophe Rocher, Jules Bouvet, Giulia Lioi
Software Mentions: 4
Published: about 5 years ago

10.12688/f1000research.9037.2

SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes
Cited by: 74
Author(s): Felix Krueger, Simon Andrews
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pcbi.1008061

Protein sequence optimization with a pairwise decomposable penalty for buried unsatisfied hydrogen bonds
Cited by: 16
Author(s): Brian Coventry, David Baker
Software Mentions: 4
Published: over 5 years ago