Scientific Papers with Software Mentions

10.1371/journal.pone.0088669

Generalization of Clustering Coefficients to Signed Correlation Networks
Cited by: 46
Author(s): Giulio Costantini, Marco Perugini
Software Mentions: 4
Published: over 12 years ago

Influence of Sampling Site and other Environmental Factors on the Bacterial Community Composition of Domestic Washing Machines
Cited by: 20
Author(s): Susanne Jacksch, Dominik Kaiser, Severin Weis, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert
Software Mentions: 4
Published: over 6 years ago

10.1186/s12876-020-01512-8

Changes in plasma bile acids are associated with gallbladder stones and polyps
Cited by: 11
Author(s): Linshi Wu, Wang Yin-ping, Sibo Zhu, Xiao Bao, Fu Zhuo, Timing Zhen, Zhiqing Yuan, Qiwei Li, Zheng Deng, J. Z. Sun, Tao Chen
Software Mentions: 4
Published: almost 6 years ago

10.1107/S2052252515006740

Serial snapshot crystallography for materials science with SwissFEL
Cited by: 18
Author(s): Catherine Dejoie, Stef Smeets, Christian Baerlocher, Nobumichi Tamura, Philip Pattison, R. Abela, Lynne B. McCusker
Software Mentions: 4
Published: over 11 years ago

10.7717/peerj.7501

Improvement of subsoil physicochemical and microbial properties by short-term fallow practices
Cited by: 4
Author(s): Guangyu Li, Walter Timo de Vries, Cifang Wu, Hongyu Zheng
Software Mentions: 4
Published: almost 7 years ago

10.1002/mpr.1803

Comparison of major depression diagnostic classification probability using the SCID, CIDI, and MINI diagnostic interviews among women in pregnancy or postpartum: An individual participant data meta‐analysis
Cited by: 31
Author(s): Brooke Levis, Dean McMillan, Ying Sun, Chen He, Danielle B Rice, Ankur Krishnan, Yin Wu, Marleine Azar, Tatiana A. Sanchez, Matthew J. Chiovitti, Parash Mani Bhandari, Dipika Neupane, Nazanin Saadat, Kira E. Riehm, Mahrukh Imran, Jill Boruff, Pim Cuijpers, Simon Gilbody, John P. A. Ioannidis, . ., Scott B. Patten, Ian Shrier, Roy C. Ziegelstein, Liane Comeau, Nicholas Mitchell, Marcello Tonelli, Simone N. Vigod, Franca Aceti, Rubén Alvarado, Cosme Alvarado‐Esquivel, Muideen O. Bakare, Jacqueline Barnes, Cheryl Tatano Beck, Carola Bindt, Philip Boyce, Adomas Bunevičius, Tiago Castro e Couto, Linda H. Chaudron, Humberto Corrêa, Felipe Pinheiro de Figueiredo, Valsamma Eapen, Michelle Fernandes, Bárbara Figueiredo, Jane Fisher, Lluïsa García-Esteve, Lisa Giardinelli, Nadine Helle, Louise M. Howard, Dina Khalifa, Jane Kohlhoff, Laima Kusminskas, Zoltán Kozinszky, Lorenzo Lelli, Angeliki Leonardou, Beth A. Lewis, Michael Maes, Valentina Meuti, Sandra Nakić Radoš, Purificación Navarro García, Daisuke Nishi, Daniel Okitundu Luwa E-Andjafono, Emma Robertson-Blackmore, Tamsen Rochat, Heather Rowe, Bonnie W.M. Siu, Alkistis Skalkidou, Alan Stein, Robert C. Stewart, Kuan Pin Su, Inger Sundström‐Poromaa, Meri Tadinac, S. Darius Tandon, Iva Alexandra Barbosa Tendais, Pavaani Thiagayson, Annamária Töreki, Anna Torres‐Giménez, Thach Tran, Kylee Trevillion, Katherine Turner, Johann M. Vega‐Dienstmaier, Karen Wynter, Kimberly A. Yonkers, Andrea Benedetti, Brett D. Thombs
Software Mentions: 4
Published: almost 7 years ago

10.2196/13772

Factors Determining Patients’ Choice Between Mobile Health and Telemedicine: Predictive Analytics Assessment
Cited by: 25
Author(s): Saif Khairat, Songzi Liu, Tanzila Zaman, Barbara Edson, Robert Gianforcaro
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-20414-0

Taxonomy of anaerobic digestion microbiome reveals biases associated with the applied high throughput sequencing strategies
Cited by: 53
Author(s): Stefano Campanaro, Laura Treu, Panagiotis Kougias, Xinyu Zhu, Irini Angelidaki
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pgen.1006464

Alternative Splicing within and between Drosophila Species, Sexes, Tissues, and Developmental Stages
Cited by: 52
Author(s): Lauren Gibilisco, Qi Zhou, Shivani Mahajan, Doris Bachtrog
Software Mentions: 4
Published: over 9 years ago

10.3390/metabo7030034

Natural Product Discovery Using Planes of Principal Component Analysis in R (PoPCAR)
Cited by: 22
Author(s): Shaurya Chanana, Chris S. Thomas, D. C. Braun, Yunfei Hou, Thomas P. Wyche, Tim S. Bugni
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pcbi.1000792

Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC)
Cited by: 74
Author(s): James A. Eddy, Leroy Hood, Nathan D. Price, Donald Geman
Software Mentions: 4
Published: about 16 years ago

10.1038/s41598-020-59415-3

Incentive motivation improves numerosity discrimination: Insights from pupillometry combined with drift-diffusion modelling
Cited by: 10
Author(s): Annika Dix, Shu‐Chen Li
Software Mentions: 4
Published: over 6 years ago

10.3390/nu12113309

Association between Breastfeeding and DNA Methylation over the Life Course: Findings from the Avon Longitudinal Study of Parents and Children (ALSPAC)
Cited by: 9
Author(s): Fernando Pires Hartwig, George Davey Smith, Andrew Simpkin, César G. Victora, Caroline L Relton, Doretta Caramaschi
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-71798-x

Semi-automated identification of biological control agent using artificial intelligence
Cited by: 2
Author(s): Jhih‐Rong Liao, Hsiao‐Chin Lee, Ming‐Chih Chiu, Chiun‐Cheng Ko
Software Mentions: 4
Published: almost 6 years ago

10.2196/13620

Search and Match Task: Development of a Taskified Match-3 Puzzle Game to Assess and Practice Visual Search
Cited by: 13
Author(s): Alvin Chesham, Stephan M. Gerber, Narayan Schütz, Hugo Saner, Klemens Gutbrod, René M. Müri, Tobias Nef, Prabitha Urwyler
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0067720

Factors Determining Forest Diversity and Biomass on a Tropical Volcano, Mt. Rinjani, Lombok, Indonesia
Cited by: 26
Author(s): Gbadamassi G.O. Dossa, Ekananda Paudel, Junichi Fujinuma, Haiying Yu, Wanlop Chutipong, Zuoqiang Yuan, Sherryl L. Paz, Rhett D. Harrison
Software Mentions: 4
Published: about 13 years ago

10.1534/g3.120.401497

Comparative Genomic Analyses and a Novel Linkage Map for Cisco (Coregonus artedi) Provide Insights into Chromosomal Evolution and Rediploidization Across Salmonids
Cited by: 13
Author(s): Danielle M. Blumstein, Matthew A. Campbell, Matthew C. Hale, Ben J. G. Sutherland, Garrett J. McKinney, Wendylee Stott, Wesley A. Larson
Software Mentions: 4
Published: about 6 years ago

10.3389/fnagi.2019.00099

Newly Developed TV-Based Cognitive Training Games Improve Car Driving Skills, Cognitive Functions, and Mood in Healthy Older Adults: Evidence From a Randomized Controlled Trial
Cited by: 24
Author(s): Rui Nouchi, Akiko Kobayashi, Haruka Nouchi, Ryuta Kawashima
Software Mentions: 4
Published: over 7 years ago

10.1186/s12884-020-03150-0

Spiral artery blood flow during pregnancy: a systematic review and meta-analysis
Cited by: 6
Author(s): V. Schiffer, Laura Evers, Sander de Haas, Chahinda Ghossein‐Doha, Salwan Al‐Nasiry, Marc E. A. Spaanderman
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.3001306

Dynamic landscape of protein occupancy across the Escherichia coli chromosome
Cited by: 18
Author(s): Peter L. Freddolino, Haley M. Amemiya, Thomas J. Goss, Saeed Tavazoie
Software Mentions: 4
Published: about 5 years ago

10.1186/s12888-018-1769-9

Prevalence of acute stress disorder among road traffic accident survivors: a meta-analysis
Cited by: 42
Author(s): Wenjie Dai, Aizhong Liu, Atipatsa Chiwanda Kaminga, Jing Deng, Zhi-Wei Lai, Jianzhou Yang, Shi Wu Wen
Software Mentions: 4
Published: about 8 years ago

10.1186/s12859-017-1586-z

MOST: most-similar ligand based approach to target prediction
Cited by: 25
Author(s): Tao Huang, Hong Mi, Chengyuan Lin, Ling Zhao, Linda L. D. Zhong, Fengbin Liu, Ge Zhang, Aiping Lu, Zhaoxiang Bian
Software Mentions: 4
Published: over 9 years ago

10.7554/eLife.60197

Effects of domestication on the gut microbiota parallel those of human industrialization
Cited by: 37
Author(s): Aspen T. Reese, Katia S. Chadaideh, Caroline E. Diggins, Laura D. Schell, Mark Beckel, Peggy Callahan, Roberta Ryan, Melissa Emery Thompson, Rachel N. Carmody
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1009216

Topology-preserving smoothing of retinotopic maps
Cited by: 3
Author(s): Yanshuai Tu, Duyan Ta, Zhong-Lin Lü, Yalin Wang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12891-021-04414-2

Risk analysis of pulmonary metastasis of chondrosarcoma by establishing and validating a new clinical prediction model: a clinical study based on SEER database
Cited by: 16
Author(s): Wenle Li, Shengtao Dong, Haosheng Wang, Rilige Wu, Huitao Wu, Zhi-Ri Tang, Junyan Zhang, Zhaohui Hu, Chengliang Yin
Software Mentions: 4
Published: about 5 years ago

10.1101/mcs.a002444

Resistance-promoting effects of ependymoma treatment revealed through genomic analysis of multiple recurrences in a single patient
Cited by: 15
Author(s): Christopher A. Miller, Sonika Dahiya, Tiandao Li, Robert S. Fulton, Matthew D. Smyth, Gavin P. Dunn, Joshua B. Rubin, Elaine R. Mardis
Software Mentions: 4
Published: over 8 years ago

10.3390/microorganisms9040816

CaptureSeq: Hybridization-Based Enrichment of cpn60 Gene Fragments Reveals the Community Structures of Synthetic and Natural Microbial Ecosystems
Cited by: 8
Author(s): Matthew G. Links, Tim J. Dumonceaux, Erin McCarthy, Sean M. Hemmingsen, Edward Topp, Jennifer Town
Software Mentions: 4
Published: over 5 years ago

10.1001/jamaoncol.2018.0174

Long-term Accuracy of Breast Cancer Risk Assessment Combining Classic Risk Factors and Breast Density
Cited by: 134
Author(s): Adam R. Brentnall, Jack Cuzick, Diana S.M. Buist, Erin J. Aiello Bowles
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-018-0550-0

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
Cited by: 67
Author(s): Johannes Alneberg, Christofer M. G. Karlsson, Anna-Maria Divne, Claudia Bergin, Félix Homa, Markus V. Lindh, Luisa W. Hugerth, Thijs J. G. Ettema, Stefan Bertilsson, Anders F. Andersson, Jarone Pinhassi
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2018.00280

Physiological and Metagenomic Characterizations of the Synergistic Relationships between Ammonia- and Nitrite-Oxidizing Bacteria in Freshwater Nitrification
Cited by: 14
Author(s): Mingwei Cai, Siu-Kin Ng, Chee Kent Lim, Hsu Feng Lu, Yangyang Jia, Patrick K. H. Lee
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-017-06214-y

Genotype-environment interaction on human cognitive function conditioned on the status of breastfeeding and maternal smoking around birth
Cited by: 9
Author(s): Sang Lee, W. M. Shalanee P. Weerasinghe, J. H. J. van der Werf
Software Mentions: 4
Published: about 9 years ago

10.1099/mgen.0.000039

Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case
Cited by: 9
Author(s): Steven T. Pullan, Talima Pearson, Jennie Latham, Joanne Mason, Barry Atkinson, Nigel Silman, Chung K. Marston, Jason W. Sahl, Dawn N. Birdsell, Alex R. Hoffmaster, Paul Keim, Richard Vipond
Software Mentions: 4
Published: almost 11 years ago

10.1038/s41598-021-92155-6

Radiomics side experiments and DAFIT approach in identifying pulmonary hypertension using Cardiac MRI derived radiomics based machine learning models
Cited by: 10
Author(s): Sarv Priya, Tanya Aggarwal, Caitlin Ward, Girish Bathla, Mathews Jacob, Alicia K. Gerke, Eric A. Hoffman, Prashant Nagpal
Software Mentions: 4
Published: about 5 years ago

10.1093/hmg/ddy206

Genome-wide survey of parent-of-origin effects on DNA methylation identifies candidate imprinted loci in humans
Cited by: 20
Author(s): Gabriel Cuéllar-Partida, Charles Laurin, Susan M. Ring, Tom R. Gaunt, Allan F. McRae, Peter M. Visscher, Grant W. Montgomery, Nicholas G. Martin, Gibran Hemani, Matthew Suderman, Caroline L Relton, George Davey Smith, David M. Evans
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-019-48673-5

Elevation of ambient temperature is associated with an increased risk of herpes zoster: a time-series analysis
Cited by: 5
Author(s): Yoon Jung Choi, Youn‐Hee Lim, Kyung-Shin Lee, Yun Chul Hong
Software Mentions: 4
Published: almost 7 years ago

10.3389/fninf.2017.00063

Running Neuroimaging Applications on Amazon Web Services: How, When, and at What Cost?
Cited by: 15
Author(s): Tara M. Madhyastha, Natalie Koh, Trevor K. M. Day, Moisés Hernández-Fernández, Austin Kelley, Daniel J. Peterson, S.Thiraviya Regina Rajan, Karl A. Woelfer, Jonathan Wolf, Thomas J. Grabowski
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0131504

A Comparative Transcriptome Analysis between Wild and Albino Yellow Catfish (Pelteobagrus fulvidraco)
Cited by: 31
Author(s): Ming Zou, Xiaoting Zhang, Ze-Chao Shi, Li Lin, Gang Ouyang, Guirong Zhang, Huan Zheng, Kai-Jian Wei, Wei Ji
Software Mentions: 4
Published: about 11 years ago

10.3389/fmicb.2021.626671

Impacts of Urbanization Undermine Nestedness of the Plant–Arbuscular Mycorrhizal Fungal Network
Cited by: 1
Author(s): Litao Lin, Yun Chen, Guoce Xu, Yuxin Zhang, Shuang Zhang, Keping Ma
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.13079

Host plants and Wolbachia shape the population genetics of sympatric herbivore populations
Cited by: 11
Author(s): Zhen F. Fu, Amanda R. Meier, Brendan Epstein, Alan O. Bergland, Carmen I. Castillo Carrillo, William C. Cooper, Regina K. Cruzado, David Horton, Andrew S. Jensen, Joanna L. Kelley, Arash Rashed, Stuart R. Reitz, Silvia I. Rondon, Jenita Thinakaran, Erik J. Wenninger, Carrie H. Wohleb, David W. Crowder, William E. Snyder
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0164688

Recalibration of the ACC/AHA Risk Score in Two Population-Based German Cohorts
Cited by: 22
Author(s): Tonia de las Heras Gala, Marie Henrike Geisel, Annette Peters, Barbara Thorand, Jens Baumert, Nils Lehmann, Karl‐Heinz Jöckel, Susanne Moebus, Raimund Erbel, Christine Meisinger, Amir A. Mahabadi, Wolfgang Köenig
Software Mentions: 4
Published: almost 10 years ago

10.7554/eLife.66749

Murine muscle stem cell response to perturbations of the neuromuscular junction are attenuated with aging
Cited by: 11
Author(s): Jacqueline Larouche, Mahir Mohiuddin, Jeongmoon J. Choi, Peter Ulintz, Paula Fraczek, Kaitlyn Sabin, Sethuramasundaram Pitchiaya, Sarah J Kurpiers, Jesus A. Castor-Macias, Wenxuan Liu, Robert Louis Hastings, Lemuel A. Brown, James F. Markworth, Kanishka de Silva, Benjamin Levi, Sofía D. Merajver, Gregorio Valdez, Joe V. Chakkalakal, Young C. Jang, Susan V. Brooks, Carlos A. Aguilar
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1008775

Transcriptomic stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology
Cited by: 26
Author(s): Nikhil Milind, Christoph Preuß, Annat Haber, Guruprasad Ananda, Shubhabrata Mukherjee, John Cai, Sarah Shapley, Benjamin A. Logsdon, Paul K. Crane, Gregory W. Carter
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2019.01400

Complete Assembly of the Genome of an Acidovorax citrulli Strain Reveals a Naturally Occurring Plasmid in This Species
Cited by: 11
Author(s): Rongzhi Yang, Diego Santos-García, Francisco Pérez‐Montaño, Gustavo Mateus da Silva, Mei Zhao, Irene Jiménez‐Guerrero, Tally Rosenberg, Gong Chen, Inbar Plaschkes, Shai Morin, R. R. Walcott, Saul Burdman
Software Mentions: 4
Published: about 7 years ago

10.1186/s12916-021-01963-0

Variation in hypertension clinical practice guidelines: a global comparison
Cited by: 15
Author(s): Richu Philip, Thomas Beaney, Nick Appelbaum, Carmen Rodríguez Gonzálvez, Charlotte Koldeweij, Amelia Kataria Golestaneh, Jonathan Clarke
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0247257

Multi-omic analysis of stroke recurrence in African Americans from the Vitamin Intervention for Stroke Prevention (VISP) clinical trial
Cited by: 3
Author(s): Nicole M. Davis Armstrong, Kelsey J. Spragley, Weimin Chen, Fang‐Chi Hsu, Michael S. Brewer, Patrick J. Horn, Stephen R. Williams, Michèle M. Sale, Bradford B. Worrall, Keith L. Keene
Software Mentions: 4
Published: over 5 years ago

10.1001/jamanetworkopen.2021.11329

Real-World Survival Outcomes Associated With First-Line Immunotherapy, Targeted Therapy, and Combination Therapy for Metastatic Clear Cell Renal Cell Carcinoma
Cited by: 15
Author(s): Nicholas H. Chakiryan, Da David Jiang, Kyle Gillis, Elizabeth Green, Ali Hajiran, Lee A. Hugar, Logan Zemp, Jingsong Zhang, Rohit Jain, Jad Chahoud, Philippe E. Spiess, Wade J. Sexton, Scott M. Gilbert, Brandon Manley
Software Mentions: 4
Published: about 5 years ago

10.3389/frai.2020.00023

PECLIDES Neuro: A Personalisable Clinical Decision Support System for Neurological Diseases
Cited by: 12
Author(s): Tamara Müller, Píetro Lió
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0024982

SNPpy - Database Management for SNP Data from Genome Wide Association Studies
Cited by: 10
Author(s): Faheem Mitha, Herodotos Herodotou, Nedyalko Borisov, Chen Jiang, Josh Yoder, Kouros Owzar
Software Mentions: 4
Published: almost 15 years ago

10.1371/journal.pone.0210672

Identification of new regulators through transcriptome analysis that regulate anthocyanin biosynthesis in apple leaves at low temperatures
Cited by: 28
Author(s): Tingting Song, Keting Li, Ting Wu, Yi Wang, Xinzhong Zhang, Xuefeng Xu, Yuncong Yao, Zhenhai Han
Software Mentions: 4
Published: over 7 years ago

10.12688/wellcomeopenres.10210.2

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data
Cited by: 17
Author(s): Aravind Venkatesan, Jee-Hyub Kim, Francesco Talo, Michele Ide-Smith, Julien Gobeill, Jacob Carter, Riza Theresa Batista-Navarro, Sophia Ananiadou, Patrick Ruch, Johanna McEntyre
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0157739

Ancient Haplotypes at the 15q24.2 Microdeletion Region Are Linked to Brain Expression of MAN2C1 and Children's Intelligence
Cited by: 2
Author(s): Alejandro Cáceres, Tõnu Esko, Irene Pappa, Armand Gutiérrez, Maria-José Lopez-Espinosa, Sabrina Llop, Mariona Bustamante, Henning Tiemeier, Andres Metspalu, Peter K. Joshi, James F. Wilsonx, Judith Reina-Castillón, Jean Shin, Zdenka Pausová, Tomáš Paus, Jordi Sunyer, Luis A. Pérez‐Jurado, Juan R. González
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0169172

Associations of Radiomic Data Extracted from Static and Respiratory-Gated CT Scans with Disease Recurrence in Lung Cancer Patients Treated with SBRT
Cited by: 82
Author(s): Elizabeth Huynh, Thibaud Coroller, Vivek Narayan, Vishesh Agrawal, John Romano, Idalid Franco, Chintan Parmar, Ying Hou, Raymond H. Mak, Hugo J.W.L. Aerts
Software Mentions: 4
Published: over 9 years ago

10.3390/s19204402

A Physical Model-Based Observer Framework for Nonlinear Constrained State Estimation Applied to Battery State Estimation
Cited by: 8
Author(s): Jonathan Brembeck
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-018-31072-7

Transcriptional shifts account for divergent resource allocation in feed efficient broiler chickens
Cited by: 12
Author(s): Henry Reyer, Barbara U. Metzler‐Zebeli, Nares Trakooljul, Michael Oster, Eduard Muráni, Siriluck Ponsuksili, Frieder Hadlich, Klaus Wimmers
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmolb.2021.617176

BIO-GATS: A Tool for Automated GPCR Template Selection Through a Biophysical Approach for Homology Modeling
Cited by: 3
Author(s): Amara Jabeen, Ramya Vijayram, Shoba Ranganathan
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.49305

Evolution of C4 photosynthesis predicted by constraint-based modelling
Cited by: 42
Author(s): Mary Ann Blätke, Andrea Bräutigam
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.01763

Feeding Bugs to Bugs: Edible Insects Modify the Human Gut Microbiome in an in vitro Fermentation Model
Cited by: 14
Author(s): Wayne Young, Sai Krishna Arojju, M.R. McNeill, Elizabeth A. Rettedal, Jessica Gathercole, N.L. Bell, Penny R. Payne
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0128465

Connecting Anxiety and Genomic Copy Number Variation: A Genome-Wide Analysis in CD-1 Mice
Cited by: 6
Author(s): Julia Brenndörfer, André Altmann, Regina Widner-Andrä, Benno Pütz, Darina Czamara, Erik Tilch, Tony Kam‐Thong, Peter Weber, Monika Rex‐Haffner, Thomas Bettecken, Andrea Bultmann, Bertram Müller‐Myhsok, Elisabeth Binder, Rainer Landgraf, Ludwig Czibere
Software Mentions: 4
Published: about 11 years ago

10.3390/ijerph16183435

A Multi-Center Competing Risks Model and Its Absolute Risk Calculation Approach
Cited by: 1
Author(s): Wang Jin-tao, Zhongshang Yuan, Yi Liu, Fuzhong Xue
Software Mentions: 4
Published: almost 7 years ago

10.1002/lno.11361

The global Microcystis interactome
Cited by: 51
Author(s): Katherine V. Cook, Chuang Li, Haiyuan Cai, Lee R. Krumholz, K. David Hambright, Hans W. Paerl, Morgan M. Steffen, Alan E. Wilson, Michele A. Burford, Hans‐Peter Grossart, David P. Hamilton, Helong Jiang, Assaf Sukenik, Delphine Latour, Elisabeth I. Meyer, Judit Padisák, Boqiang Qin, Richard M. Zamor, Guangwei Zhu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008222

Genome Complexity Browser: Visualization and quantification of genome variability
Cited by: 1
Author(s): Alexander I. Manolov, Dmitry N. Konanov, Dmitry E. Fedorov, Ivan Osmolovsky, Rinat Vereshchagin, Elena N. Ilina
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1009745

The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution
Cited by: 9
Author(s): Matthew H. Van Dam, Analyn Cabras, James Henderson, Andrew J. Rominger, Cynthia Pérez Estrada, Arina D. Omer, Olga Dudchenko, E Aiden, Athena Lam
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.41853

Vocal and locomotor coordination develops in association with the autonomic nervous system
Cited by: 15
Author(s): Morgan L. Gustison, Jeremy I. Borjon, Daniel Yasumasa Takahashi, Asif A. Ghazanfar
Software Mentions: 4
Published: about 7 years ago

10.3390/s20123604

Towards a Secure Thermal-Energy Aware Routing Protocol in Wireless Body Area Network Based on Blockchain Technology
Cited by: 60
Author(s): Zeinab Shahbazi, Yung-Cheol Byun
Software Mentions: 4
Published: about 6 years ago

10.1172/jci.insight.143289

LncRNA DRAIR is downregulated in diabetic monocytes and modulates inflammatory phenotype via epigenetic mechanisms
Cited by: 15
Author(s): Marpadga A. Reddy, Vishnu Amaram, Sadhan Das, Vinay Singh Tanwar, Rituparna Ganguly, Mei Wang, Linda Lanting, Lingxiao Zhang, Maryam Abdollahi, Zhuo Chen, Xiwei Wu, Sridevi Devaraj, Rama Natarajan
Software Mentions: 4
Published: over 5 years ago

10.3389/fneur.2019.00512

Serial S100B Sampling Detects Intracranial Lesion Development in Patients on Extracorporeal Membrane Oxygenation
Cited by: 7
Author(s): Alexander Fletcher‐Sandersjöö, Caroline Lindblad, Eric Peter Thelin, Jiri Bartek, Marko Sallisalmi, Adrian Elmi-Terander, Mikael Svensson, Bo‐Michael Bellander, Lars Broman
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0234050

Characterizing the microbiome of ectoparasitic louse flies feeding on migratory raptors
Cited by: 4
Author(s): Rebecca A. McCabe, Joseph P. Receveur, Jennifer L. Houtz, Kayli L. Thomas, M. Eric Benbow, Jennifer L. Pechal, John R. Wallace
Software Mentions: 4
Published: about 6 years ago

10.3390/cancers11060822

Dissecting the Prognostic Significance and Functional Role of Progranulin in Chronic Lymphocytic Leukemia
Cited by: 4
Author(s): Lena Schulze-Edinghausen, Claudia Dürr, Selcen Öztürk, Manuela Zucknick, Axel Benner, Verena Kalter, S. Öhl, Viola Close, Patrick Wuchter, Stephan Stilgenbauer, Peter Lichter, Martina Seiffert
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.40162

Motion sensing superpixels (MOSES) is a systematic computational framework to quantify and discover cellular motion phenotypes
Cited by: 8
Author(s): Felix Zhou, Carlos Ruiz‐Puig, Richard Owen, Michael J. White, Jens Rittscher, Xin Lü
Software Mentions: 4
Published: over 7 years ago

10.1002/1878-0261.12490

Solid pseudopapillary neoplasms of the pancreas are dependent on the Wnt pathway
Cited by: 14
Author(s): Pier Selenica, Nitya Raj, Rahul Kumar, David Brown, Oriol Arqués, Diane Lauren Reidy, David S. Klimstra, Matija Snuderl, Jonathan Serrano, Héctor G. Pálmer, Britta Weigelt, Jorge S. Reis‐Filho, Maurizio Scaltriti
Software Mentions: 4
Published: about 7 years ago

10.1007/s00442-019-04410-3

Do phase-dependent life history traits in cyclic voles persist in a common environment?
Cited by: 2
Author(s): Janne Sundell, Hannu Ylönen, Marko Haapakoski
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0246501

Mental health stigma and professional help-seeking attitudes a comparison between Cuba and Germany
Cited by: 6
Author(s): Laura Nohr, Alexis Lorenzo Ruíz, Juan Emilio Sandoval Ferrer, Ulrike Buhlmann
Software Mentions: 4
Published: over 5 years ago

10.1186/s12711-017-0368-4

ShinyGPAS: interactive genomic prediction accuracy simulator based on deterministic formulas
Cited by: 8
Author(s): Gota Morota
Software Mentions: 4
Published: over 8 years ago

10.1111/eva.12176

New host and lineage diversity of avian haemosporidia in the northern Andes
Cited by: 52
Author(s): Ryan J. Harrigan, Raúl Ernesto Sedano-Cruz, Anthony Chasar, Jaime A. Chaves, Jennifer T. Nguyen, Alexis Whitaker, Thomas B. Smith
Software Mentions: 4
Published: about 12 years ago

10.1038/s41598-021-85052-5

The holding temperature of blood during a delay to processing can affect serum and plasma protein measurements
Cited by: 8
Author(s): Milton Ashworth, Benjamin Small, Lucy Oldfield, A.G. Evans, William Greenhalf, Christopher Halloran, Eithne Costello
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.00063

Comparative Genomics of Completely Sequenced Lactobacillus helveticus Genomes Provides Insights into Strain-Specific Genes and Resolves Metagenomics Data Down to the Strain Level
Cited by: 47
Author(s): Michael Schmid, Jonathan Muri, Damianos P. Melidis, Adithi R. Varadarajan, Vincent Somerville, Adrian Wicki, Aline Moser, M Bourqui, Claudia Wenzel, Elisabeth Eugster‐Meier, Juerg E. Frey, Stefan Irmler, Christian H. Ahrens
Software Mentions: 4
Published: over 8 years ago

10.1155/2014/393280

High-dimensional additive hazards regression for oral squamous cell carcinoma using microarray data: a comparative study.
Cited by: 5
Author(s): Omid Hamidi, Leili Tapak, Aarefeh Jafarzadeh Kohneloo, Majid Sadeghifar
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0225096

Diagnostic accuracy of SOX11 immunohistochemistry in mantle cell lymphoma: A meta-analysis
Cited by: 4
Author(s): Woojoo Lee, Eun Hee Shin, Bo‐Hyung Kim, Hyunchul Kim
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0223514

Diagnostic accuracy of midkine on hepatocellular carcinoma: A meta-analysis
Cited by: 8
Author(s): Bo-Han Zhang, Bo Li, Lingxiang Kong, Lvnan Yan, Jiayin Yang
Software Mentions: 4
Published: almost 7 years ago

10.3390/cells10092300

Quasar: Easy Machine Learning for Biospectroscopy
Cited by: 39
Author(s): Marko Toplak, Stuart Read, Christophe Sandt, Ferenc Borondics
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0130741

Characterisation of Brachycephalic Obstructive Airway Syndrome in French Bulldogs Using Whole-Body Barometric Plethysmography
Cited by: 61
Author(s): Nai‐Chieh Liu, David R. Sargan, Vicki Adams, Jane Ladlow
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-020-62574-y

Changes in Reef Fish Community Structure Following the Deepwater Horizon Oil Spill
Cited by: 19
Author(s): Justin P. Lewis, Joseph H. Tarnecki, Steven B. Garner, David Chagaris, William F. Patterson
Software Mentions: 4
Published: over 6 years ago

10.1186/s13073-021-00853-7

Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis
Cited by: 20
Author(s): Damian R. Plichta, Juhi Somani, Matthieu Pichaud, Zachary S Wallace, Ana D. Fernandes, Cory A. Perugino, Harri Lähdesmäki, John H. Stone, Hera Vlamakis, Daniel C. Chung, Dinesh Khanna, Shiv Pillai, Ramnik J. Xavier
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-15-176

QMachine: commodity supercomputing in web browsers
Cited by: 17
Author(s): Sean R. Wilkinson, Jonas S. Almeida
Software Mentions: 4
Published: about 12 years ago

10.1093/molbev/msw004

Environmental Correlation Analysis for Genes Associated with Protection against Malaria
Cited by: 20
Author(s): Margaret J. Mackinnon, Carolyne Ndila, Sophie Uyoga, Alex Macharia, Robert W. Snow, Gavin Band, Anna Rautanen, Kirk A. Rockett, Dominic P. Kwiatkowski, Thomas N. Williams
Software Mentions: 4
Published: over 10 years ago

10.1002/ece3.6760

Ten strategies for a successful transition to remote learning: Lessons learned with a flipped course
Cited by: 14
Author(s): Ana E. Garcia‐Vedrenne, Chloé Orland, Kimberly M. Ballare, Beth Shapiro, Robert K. Wayne
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.ppat.1006348

HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation
Cited by: 32
Author(s): Yoshiaki Nakano, Naoko Misawa, Guillermo Juarez-Fernandez, Miyu Moriwaki, Shinji Nakaoka, Takaaki Funo, Eri Yamada, Andrew Soper, Rokusuke Yoshikawa, Diako Ebrahimi, Yuuya Tachiki, Shingo Iwami, Reuben S. Harris, Yoshio Koyanagi, Kei Sato
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-020-6672-3

De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly
Cited by: 19
Author(s): Anthony Bayega, Haïg Djambazian, Konstantina T. Tsoumani, Maria‐Eleni Gregoriou, Efthimia Sagri, Elena Drosopoulou, Penelope Mavragani-Tsipidou, Kristina Giorda, George Tsiamis, Kostas Bourtzis, Spyridon Oikonomopoulos, Ken Dewar, Deanna M. Church, Alexie Papanicolaou, Kostas D. Mathiopoulos, Jiannis Ragoussis
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2288-13-62

Predicting hemoglobin levels in whole blood donors using transition models and mixed effects models
Cited by: 14
Author(s): Kazem Nasserinejad, Wim de Kort, M. L. Baart, Arnošt Komárek, Joost van Rosmalen, Emmanuel Lesaffre
Software Mentions: 4
Published: over 13 years ago

10.1128/mSystems.00003-16

Differential Functional Constraints Cause Strain-Level Endemism in Polynucleobacter Populations
Cited by: 18
Author(s): Naseer Sangwan, Iratxe Zarraonaindia, Jarrad Hampton-Marcell, Herbert Ssegane, Tifani W. Eshoo, Geeta Rijal, M. Cristina Negri, Jack A. Gilbert
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-020-75333-w

Expression of NF-κB associated lncRNAs in schizophrenia
Cited by: 13
Author(s): Amin Safa, Elham Badrlou, Shahram Arsang‐Jang, Arezou Sayad, Mohammad Taheri, Soudeh Ghafouri‐Fard
Software Mentions: 4
Published: almost 6 years ago

10.1161/CIRCULATIONAHA.118.034856

Association Between Ambient Air Pollution and Cardiac Morpho-Functional Phenotypes
Cited by: 61
Author(s): Nay Aung, Mihir M. Sanghvi, Filip Zemrak, Aaron M. Lee, Jackie A. Cooper, José Miguel Paiva, Ross Thomson, Kenneth Fung, Mohammed Y Khanji, Elena Lukaschuk, Valentina Carapella, Young Jin Kim, Patricia B. Munroe, Stefan K. Piechnik, Stefan Neubauer, Steffen E. Petersen
Software Mentions: 4
Published: over 7 years ago

10.1038/srep45840

Microbial Biogeography and Core Microbiota of the Rat Digestive Tract
Cited by: 105
Author(s): Dongyao Li, Haiqin Chen, Bingyong Mao, Qin Yang, Jianxin Zhao, Zhennan Gu, Hao Zhang, Yong Q. Chen, Wei Chen
Software Mentions: 4
Published: over 9 years ago

10.1186/s13015-016-0069-5

Bitpacking techniques for indexing genomes: I. Hash tables
Cited by: 2
Author(s): Thomas D. Wu
Software Mentions: 4
Published: over 10 years ago

10.2196/27214

Google Trends for Pain Search Terms in the World’s Most Populated Regions Before and After the First Recorded COVID-19 Case: Infodemiological Study
Cited by: 13
Author(s): Istvan S. Szilagyi, Torsten Ullrich, Kordula Lang-Illievich, Christoph Klivinyi, Gregor Alexander Schittek, Holger Simonis, Helmar Bornemann‐Cimenti
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008197

Novel protective and risk loci in hip dysplasia in German Shepherds
Cited by: 8
Author(s): Lea Mikkola, Saila Holopainen, Anu K. Lappalainen, Tiina Pessa‐Morikawa, Thomas Pulikotial Augustine, Meharji Arumilli, Marjo K. Hytönen, Osmo Hakosalo, Hannes Lohi, Antti Iivanainen
Software Mentions: 4
Published: about 7 years ago

10.1186/s12935-020-01264-1

Nine glycolysis-related gene signature predicting the survival of patients with endometrial adenocarcinoma
Cited by: 26
Author(s): Jinhui Liu, Siyue Li, Feng Gao, Hua Meng, Song Nie, Rui Sun, Jing Yang, Wenjun Cheng
Software Mentions: 4
Published: about 6 years ago