10.1371/journal.pcbi.1006090

DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP
Cited by: 12
Author(s): Sneha Mitra, Anushua Biswas, Leelavati Narlikar
Software Mentions: 4
Published: over 8 years ago

10.1155/2017/7691937

IPF-LASSO: Integrative <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M1"><mml:mrow><mml:msub><mml:mrow><mml:mi>L</mml:mi></mml:mrow><mml:mrow><mml:mn fontstyle="italic">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math>-Penalized Regression with Penalty Factors for Prediction Based on Multi-Omics Data
Cited by: 66
Author(s): Anne‐Laure Boulesteix, Riccardo De Bin, Xiaoyu Jiang, Mathias Fuchs
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-82547-z

An evaluation of approaches for rare variant association analyses of binary traits in related samples
Cited by: 4
Author(s): Ming-Huei Chen, Achilleas Pitsillides, Qiong Yang
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-019-2659-y

IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis
Cited by: 2
Author(s): Mohieddin Jafari, Payman Nickchi, Soheil Jahangiri, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pntd.0008235

Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis
Cited by: 11
Author(s): Marcela Suárez-Esquivel, Gabriela Hernández-Mora, Nazareth Ruíz-Villalobos, Elías Barquero-Calvo, Carlos Chacón-Díaz, Jason T. Ladner, Gerardo Oviedo-Sánchez, Jeffrey T. Foster, Norman Rojas‐Campos, Esteban Chaves-Olarte, Nicholas R. Thomson, Edgardo Moreno, Caterina Guzmán-Verri
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-72045-z

A data-driven medication score predicts 10-year mortality among aging adults
Cited by: 3
Author(s): Paavo Häppölä, Aki S. Havulinna, Tõnis Tasa, Nina Mars, Markus Perola, Mikko Kallela, Lili Milani, Seppo Koskinen, Veikko Salomaa, Benjamin M. Neale, Aarno Palotie, Mark J. Daly, Samuli Ripatti
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pbio.1002146

The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism
Cited by: 45
Author(s): Gergő Gógl, Kyle D. Schneider, Brian J. Yeh, Alam Nashida, Alex N Nguyen Ba, Alan M. Moses, Csaba Hetényi, Attila Reményi, Eric L. Weiss
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-020-61394-4

Janzen-Connell effects shape gene flow patterns and realized fitness in the tropical dioecious tree Spondias purpurea (ANACARDIACEAE)
Cited by: 7
Author(s): E. Jacob Cristóbal‐Pérez, Eric J. Fuchs, Ulises Olivares-Pinto, Maurício Quesada
Software Mentions: 4
Published: over 6 years ago

10.1155/2021/6533049

Effect of Aberrant Long Noncoding RNA on the Prognosis of Clear Cell Renal Cell Carcinoma
Cited by: 1
Author(s): Han Wu, Haixiao Wu, Peng Sun, Dezhi Zhu, Min Ma, Wentao Fan
Software Mentions: 4
Published: almost 5 years ago

10.1155/2017/1421409

Probing for Sparse and Fast Variable Selection with Model-Based Boosting
Cited by: 23
Author(s): Janek Thomas, Tobias Hepp, Andreas Mayr, Bernd Bischl
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0167259

Effects of Recreation on Animals Revealed as Widespread through a Global Systematic Review
Cited by: 153
Author(s): Courtney L. Larson, Sarah E. Reed, Adina M. Merenlender, Kevin R. Crooks
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-017-07975-2

Signs of innate immune activation and premature immunosenescence in psoriasis patients
Cited by: 30
Author(s): Liisi Šahmatova, Elena Sügis, Marina Šunina, Helen Hermann, Ele Prans, Maire Pihlap, Kristi Abram, Ana Rebane, Hedi Peterson, Pärt Peterson, Külli Kingo, Kai Kisand
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12864-017-4186-4

The gene SMART study: method, study design, and preliminary findings
Cited by: 45
Author(s): Xu Yan, Nir Eynon, Ioannis Papadimitriou, Jujiao Kuang, Fiona Munson, Oren Tirosh, Lannie O’Keefe, Lyn R. Griffiths, Kevin J. Ashton, Nuala M. Byrne, Yannis Pitsiladis, David Bishop
Software Mentions: 4
Published: almost 9 years ago

10.7554/eLife.15477

Increasing Notch signaling antagonizes PRC2-mediated silencing to promote reprograming of germ cells into neurons
Cited by: 31
Author(s): Stefanie Seelk, Irene Adrian‐Kalchhauser, Balázs Hargitai, Martina Hajdůšková, Silvia Gutnik, Baris Tursun, Rafal Ciosk
Software Mentions: 4
Published: almost 10 years ago

10.1186/1471-2288-13-28

Dealing with missing data in the Center for Epidemiologic Studies Depression self-report scale: a study based on the French E3N cohort
Cited by: 17
Author(s): Noémie Resseguier, Hélène Verdoux, Roch Giorgi, Françoise Clavel‐Chapelon, Xavier Paolettí
Software Mentions: 4
Published: over 13 years ago

10.1038/hdy.2016.103

Detection of genetic incompatibilities in non-model systems using simple genetic markers: hybrid breakdown in the haplodiploid spider mite Tetranychus evansi
Cited by: 21
Author(s): Bram Knegt, Tomos Potter, Nicole A Pearson, Yuuji Sato, Heike Staudacher, Bernardus C. J. Schimmel, E. Toby Kiers, Martijn Egas
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0257226

Comparing the reliability of relative bird abundance indices from standardized surveys and community science data at finer resolutions
Cited by: 4
Author(s): Mei-Ling E. Feng, Judy Che‐Castaldo
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0201791

Spatial patterns and predictor variables vary among different types of primary producers and consumers in eelgrass (Zostera marina) beds
Cited by: 6
Author(s): Mizuho Namba, Masahiro Nakaoka
Software Mentions: 4
Published: almost 8 years ago

10.1155/2020/2123787

Identification of lncRNA and mRNA Biomarkers in Osteoarthritic Degenerative Meniscus by Weighted Gene Coexpression Network and Competing Endogenous RNA Network Analysis
Cited by: 4
Author(s): Jun Zhao, Yu Su, Jianfei Jiao, Zhengchun Wang, Xiangchun Fang, Xuefeng He, Xiaofeng Zhang, Zhao Liu, Xilin Xu
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2020.560229

A Molecular Subtype Model for Liver HBV-Related Hepatocellular Carcinoma Patients Based on Immune-Related Genes
Cited by: 5
Author(s): Qiyao Zhang, Xiao Yu, Qingyuan Zheng, Yuting He, Wenzhi Guo
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0047500

Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation
Cited by: 88
Author(s): Tesfaye Wubet, Sabina Christ, Ingo Schöning, Steffen Boch, Melanie Gawlich, Beatrix Schnabel, Markus Fischer, François Buscot
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12014-021-09318-w

Circulating proteins associated with allergy development in infants—an exploratory analysis
Cited by: 5
Author(s): Marit Stockfelt, Mun‐Gwan Hong, Bill Hesselmar, Ingegerd Adlerberth, Agnes E. Wold, Jochen M. Schwenk, Anna‐Carin Lundell, Anna Rudin
Software Mentions: 4
Published: over 5 years ago

10.3390/cells9091938

Detecting Interactive Gene Groups for Single-Cell RNA-Seq Data Based on Co-Expression Network Analysis and Subgraph Learning
Cited by: 10
Author(s): Xiucai Ye, Weihang Zhang, Yasunori Futamura, Tetsuya Sakurai
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1007488

Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process
Cited by: 9
Author(s): Jifan Shi, Tiejun Li, Luonan Chen, Kazuyuki Aihara
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0221498

The effect of overnight consolidation in the perceptual learning of non-native tonal contrasts
Cited by: 14
Author(s): Zhen Qin, Caicai Zhang
Software Mentions: 4
Published: over 6 years ago

10.1111/geb.12991

Seasonal drivers of understorey temperature buffering in temperate deciduous forests across Europe
Cited by: 92
Author(s): Florian Zellweger, David A. Coomes, Jonathan Lenoir, Leen Depauw, Sybryn L. Maes, Monika Wulf, K. J. Kirby, Jörg Brunet, Martin Kopecký, František Máliš, Wolfgang Schmidt, Steffi Heinrichs, J. den Ouden, Bogdan Jaroszewicz, Gauthier Buyse, Fabien Spicher, Kris Verheyen, Pieter De Frenne
Software Mentions: 4
Published: almost 7 years ago

10.1128/mBio.02500-18

Determination of the Global Pattern of Gene Expression in Yeast Cells by Intracellular Levels of Guanine Nucleotides
Cited by: 8
Author(s): Andrew Hesketh, Marta Vergnano, Stephen G. Oliver
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0182814

Honey bee (Apis mellifera) colony health and pathogen composition in migratory beekeeping operations involved in California almond pollination
Cited by: 53
Author(s): William Glenny, Ian Cavigli, Katie F. Daughenbaugh, Rosemarie Radford, Susan E. Kegley, Michelle L. Flenniken
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13059-019-1869-y

Characterizing the interplay between gene nucleotide composition bias and splicing
Cited by: 16
Author(s): Sébastien Lemaire, Nicolas Fontrodona, Fabien Aubé, Jean‐Baptiste Claude, Hélène Polvèche, Laurent Modolo, Cyril F. Bourgeois, Franck Mortreux, Didier Auboeuf
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0238034

An evaluation of bird and bat mortality at wind turbines in the Northeastern United States
Cited by: 12
Author(s): Daniel Choi, Thomas Wittig, Bryan M. Kluever
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12916-018-1039-1

Performance of InSilicoVA for assigning causes of death to verbal autopsies: multisite validation study using clinical diagnostic gold standards
Cited by: 19
Author(s): Abraham D. Flaxman, Jonathan Joseph, Christopher J L Murray, Ian Riley, Alan D. López
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pgen.1007123

Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish
Cited by: 4
Author(s): Napo K. M. Cheung, Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Harumi Fukushima, Shinichi Morishita, Hiroyuki Takeda
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.66662

Homo-oligomerization of the human adenosine A2A receptor is driven by the intrinsically disordered C-terminus
Cited by: 9
Author(s): Khanh D. Nguyen, Michael Vigers, Eric Sefah, Susanna Seppälä, Jennifer Paige Hoover, Nicole S. Schonenbach, Blake Mertz, Michelle O’Malley, Songi Han
Software Mentions: 4
Published: about 5 years ago

10.3390/s21093239

Proposal of an Economy of Things Architecture and an Approach Comparing Cryptocurrencies
Cited by: 0
Author(s): Bruno Machado Agostinho, Mário A. R. Dantas, Alex Sandro Roschildt Pinto
Software Mentions: 4
Published: over 5 years ago

10.1016/j.ygcen.2017.09.025

Effects of thyroid hormone manipulation on pre-nuptial molt, luteinizing hormone and testicular growth in male white-crowned sparrows (Zonotrichia leuchophrys gambelii)
Cited by: 26
Author(s): Jonathan H. Pérez, Simone Meddle, John C. Wingfield
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-52478-x

Ligand-Induced Conformational Dynamics of A Tyramine Receptor from Sitophilus oryzae
Cited by: 14
Author(s): Mac Kevin E. Braza, Jerrica Dominique N. Gazmen, Eizadora T. Yu, Ricky B. Nellas
Software Mentions: 4
Published: over 6 years ago

10.1099/mgen.0.000426

Symbiosis islands of Loteae-nodulating Mesorhizobium comprise three radiating lineages with concordant nod gene complements and nodulation host-range groupings
Cited by: 4
Author(s): Benjamin J. Perry, John T. Sullivan, Elena Colombi, Riley Murphy, Joshua P. Ramsay, Clive W. Ronson
Software Mentions: 4
Published: almost 6 years ago

10.3390/molecules25245934

CGMD Platform: Integrated Web Servers for the Preparation, Running, and Analysis of Coarse-Grained Molecular Dynamics Simulations
Cited by: 13
Author(s): Alessandro Marchetto, Zeineb Si Chaib, Claudia Rossi, Rui P. P. L. Ribeiro, Sergio Pantano, Giulia Rossetti, Alejandro Giorgetti
Software Mentions: 4
Published: over 5 years ago

10.1186/s13148-020-00898-2

Integrated epigenetic biomarkers in circulating cell-free DNA as a robust classifier for pancreatic cancer
Cited by: 28
Author(s): Feng Cao, Ailin Wei, Xiaofan Hu, Yijing He, Jun Zhang, Lin Xia, Kailing Tu, Jue Yuan, Ziheng Guo, Hongying Liu, Dan Xie, Ang Li
Software Mentions: 4
Published: about 6 years ago

10.3390/s19214724

The Advent of the Internet of Things in Airfield Lightning Systems: Paving the Way from a Legacy Environment to an Open World
Cited by: 2
Author(s): Enrico Buzzoni, Fabio Forlani, Carlo Giannelli, Matteo Mazzotti, Stefano Parisotto, Alessandro Pomponio, Cesare Stefanelli
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0171046

Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration
Cited by: 79
Author(s): Kwanjeera Wanichthanarak, Sili Fan, Dmitry Grapov, Dinesh Kumar Barupal, Oliver Fiehn
Software Mentions: 4
Published: over 9 years ago

10.3389/fonc.2021.705547

Construction of Novel Methylation-Driven Gene Model and Investigation of PARVB Function in Glioblastoma
Cited by: 3
Author(s): Wanli Yu, Pengfei Wu, Fang Wang, Miao Li, Bo Han, Zhiqun Jiang
Software Mentions: 4
Published: almost 5 years ago

10.3390/s18113868

A Practical Evaluation on RSA and ECC-Based Cipher Suites for IoT High-Security Energy-Efficient Fog and Mist Computing Devices
Cited by: 83
Author(s): Manuel Suárez-Albela, Paula Fraga‐Lamas, Tiago M. Fernández‐Caramés
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21082966

Differential Expression and Function of Bicellular Tight Junctions in Skin and Oral Wound Healing
Cited by: 20
Author(s): Trevor R. Leonardo, Junhe Shi, Dandan Chen, Harsh M. Trivedi, Lin Chen
Software Mentions: 4
Published: over 6 years ago

10.1111/1365-2435.13354

Immune state is associated with natural dietary variation in wild mice<i>Mus musculus domesticus</i>
Cited by: 11
Author(s): Christopher H. Taylor, Stuart Young, Jonathan Fenn, Angela L. Lamb, Ann Lowe, Benoit Poulin, Andrew D. C. MacColl, Janette E. Bradley
Software Mentions: 4
Published: about 7 years ago

10.3390/nu13061937

Characterizing the Effects of Calcium and Prebiotic Fiber on Human Gut Microbiota Composition and Function Using a Randomized Crossover Design—A Feasibility Study
Cited by: 8
Author(s): Lara Yoon, Karin B. Michels
Software Mentions: 4
Published: about 5 years ago

10.3390/nu13010205

Parenteral Fish-Oil Containing Lipid Emulsions Limit Initial Lipopolysaccharide-Induced Host Immune Responses in Preterm Pigs
Cited by: 5
Author(s): William Yakah, David Ramiro-Cortijo, Pratibha Singh, J. Howard Brown, Barbara J. Stoll, Madhulika Kulkarni, Berthe C Oosterloo, Doug Burrin, Krishna Rao Maddipati, Raina N. Fichorova, Steven D. Freedman, Camilia R. Martin
Software Mentions: 4
Published: over 5 years ago

10.1155/2017/6896390

Gene Expression Profiling of the Optic Nerve Head of Patients with Primary Open-Angle Glaucoma
Cited by: 4
Author(s): Xinrong Wang, KeWei Gong, Haiyan Li, Cong Yi Wang, Chaoyi Qu, Hui Li
Software Mentions: 4
Published: over 9 years ago

10.3389/fonc.2021.701500

Development and Validation of a Radiosensitivity Prediction Model for Lower Grade Glioma Based on Spike-and-Slab Lasso
Cited by: 3
Author(s): Zixuan Du, Shang Cai, Derui Yan, Huijun Li, Xinyan Zhang, Wei Yang, Jianping Cao, Nengjun Yi, Zaixiang Tang
Software Mentions: 4
Published: about 5 years ago

10.3390/ijerph16111981

Development of a WebGIS-Based Analysis Tool for Human Health Protection from the Impacts of Prescribed Fire Smoke in Southeastern USA
Cited by: 7
Author(s): Yongtao Hu, Ha Ai, M. Talat Odman, A. Vaidyanathan, Armistead G. Russell
Software Mentions: 4
Published: about 7 years ago

10.1186/2049-2618-2-7

Bacterial communities on classroom surfaces vary with human contact
Cited by: 121
Author(s): James F. Meadow, Adam E. Altrichter, Steven W. Kembel, Maxwell Moriyama, Timothy K. O’Connor, A. M. Womack, Glen Brown, Jessica L. Green, B. J. M. Bohannan
Software Mentions: 4
Published: over 12 years ago

10.3390/ijms21093262

Whole-Genome Deep Sequencing Reveals Host-Driven in-planta Evolution of Columnea Latent Viroid (CLVd) Quasi-Species Populations
Cited by: 5
Author(s): Parichate Tangkanchanapas, Annelies Haegeman, Tom Ruttink, Monica Höfte, Kris De Jonghe
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0246869

Uniting against a common enemy: Perceived outgroup threat elicits ingroup cohesion in chimpanzees
Cited by: 8
Author(s): James Brooks, Ena Onishi, Isabelle R. Clark, Manuel Bohn, Shinya Yamamoto
Software Mentions: 4
Published: over 5 years ago

10.3390/ani10112123

Social Network Analysis of Agonistic Behaviour and Its Association with Economically Important Traits in Pigs
Cited by: 8
Author(s): Saif Agha, E. Fábrega, Raquel Quintanilla, Juan Pablo Sánchez
Software Mentions: 4
Published: over 5 years ago

10.3390/ani10010144

Characterization of Anaerobic Rumen Fungal Community Composition in Yak, Tibetan Sheep and Small Tail Han Sheep Grazing on the Qinghai-Tibetan Plateau
Cited by: 16
Author(s): Wei Guo, Weiwei Wang, Sisi Bi, Ruijun Long, Farman Ullah, Muhammad Shafiq, Mi Zhou, Ying Zhang
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-020-06789-3

Distinctions between sex and time in patterns of DNA methylation across puberty
Cited by: 11
Author(s): Sarah R. Moore, Kathryn L. Humphreys, Natalie L. Colich, Elena Goetz Davis, David Lin, Julia L. MacIsaac, Michæl S. Kobor, Ian H. Gotlib
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2105-13-82

Readjoiner: a fast and memory efficient string graph-based sequence assembler
Cited by: 50
Author(s): Giorgio Gonnella, Stefan Kurtz
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0104504

Identification of Significant Features by the Global Mean Rank Test
Cited by: 17
Author(s): Martin Klammer, J. Nikolaj Dybowski, Daniel Hoffmann, Christoph Schaab
Software Mentions: 4
Published: almost 12 years ago

10.3390/jof5040095

9th Trends in Medical Mycology Held on 11–14 October 2019, Nice, France, Organized under the Auspices of EORTC-IDG and ECMM
Cited by: 14
Author(s): Jean Pierre Gangneux, Olivier Lortholary, Oliver A. Cornely, Livio Pagano
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pgen.1007498

Cyclin G and the Polycomb Repressive complexes PRC1 and PR-DUB cooperate for developmental stability
Cited by: 7
Author(s): Delphine Dardalhon-Cuménal, Jérôme Deraze, Camille Dupont, Valérie Ribeiro, Anne Coléno-Costes, Juliette Pouch, Stéphane Le Crom, Hélène Thomassin, Vincent Debat, Neel B. Randsholt, Frédérique Peronnet
Software Mentions: 4
Published: about 8 years ago

10.1016/j.artmed.2020.101930

Using topological data analysis and pseudo time series to infer temporal phenotypes from electronic health records
Cited by: 14
Author(s): Arianna Dagliati, Nophar Geifman, Niels Peek, John H. Holmes, Lucia Sacchi, Riccardo Bellazzi, Seyed Erfan Sajjadi, Allan Tucker
Software Mentions: 4
Published: about 6 years ago

10.1099/mgen.0.000153

Development and implementation of multilocus sequence typing to study the diversity of the yeast Kluyveromyces marxianus in Italian cheeses
Cited by: 13
Author(s): Fabrizia Tittarelli, Javier A. Varela, Loughlin Gethins, Catherine Stanton, R. Paul Ross, Giovanna Suzzi, L. Grazia, Rosanna Tofalo, John P. Morrissey
Software Mentions: 4
Published: over 8 years ago

10.1186/s13059-021-02438-4

CoCoA-diff: counterfactual inference for single-cell gene expression analysis
Cited by: 6
Author(s): Yongjin Park, M Kellis
Software Mentions: 4
Published: almost 5 years ago

10.1128/mSphere.00936-20

Randomized Controlled Trial of Oral Vancomycin Treatment in Clostridioides difficile-Colonized Patients
Cited by: 18
Author(s): Skye Fishbein, Tiffany Hink, Kimberly A. Reske, Candice Cass, Emily Struttmann, Zainab Hassan Iqbal, Sondra Seiler, Jennie H. Kwon, Carey‐Ann D. Burnham, Gautam Dantas, Erik R. Dubberke
Software Mentions: 4
Published: over 5 years ago

10.3389/fvets.2018.00123

Cross-Fostering Implications for Pig Mortality, Welfare and Performance
Cited by: 43
Author(s): Julia Adriana Calderón Díaz, Edgar García Manzanilla, Alessia Diana, Laura Boyle
Software Mentions: 4
Published: about 8 years ago

10.1186/1471-2105-13-294

Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction
Cited by: 25
Author(s): Antonio M. Mora, Ian Donaldson
Software Mentions: 4
Published: over 13 years ago

10.1128/mSphere.00730-19

Gut Microbiomes of the Eastern Oyster ( <i>Crassostrea virginica</i> ) and the Blue Mussel ( <i>Mytilus edulis</i> ): Temporal Variation and the Influence of Marine Aggregate-Associated Microbial Communities
Cited by: 43
Author(s): Melissa L. Pierce, J. Evan Ward
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pbio.3000705

Vascularized human cortical organoids (vOrganoids) model cortical development in vivo
Cited by: 178
Author(s): Yingchao Shi, Le Sun, Mengdi Wang, Jianwei Liu, Shaobo Zhong, Rui Li, Peng Li, Dadong Guo, Fang Ai, Ruiguo Chen, Woo Ping Ge, Qian Wu, Xiaoqun Wang
Software Mentions: 4
Published: about 6 years ago

10.1093/gigascience/giy005

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline
Cited by: 9
Author(s): Anil Thanki, Nicola Soranzo, Wilfried Haerty, Robert P. Davey
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.1881

High richness of ectomycorrhizal fungi and low host specificity in a coastal sand dune ecosystem revealed by network analysis
Cited by: 21
Author(s): Alice Roy‐Bolduc, Étienne Laliberté, Mohamed Hijri
Software Mentions: 4
Published: over 10 years ago

10.1002/ece3.6560

Plant species identity drives soil microbial community structures that persist under a following crop
Cited by: 19
Author(s): Aaron Fox, Andreas Lüscher, Franco Widmer
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: over 5 years ago

10.1016/j.gpb.2018.10.006

I3: A Self-organising Learning Workflow for Intuitive Integrative Interpretation of Complex Genetic Data
Cited by: 1
Author(s): Yun Tan, Lulu Jiang, Kankan Wang, Hai Fang
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41396-021-00953-7

Nutrient complexity triggers transitions between solitary and colonial growth in bacterial populations
Cited by: 30
Author(s): Glen D’Souza, Vanessa R. Povolo, Johannes M. Keegstra, Roman Stocker, Martin Ackermann
Software Mentions: 4
Published: over 5 years ago

10.1186/s12931-018-0950-5

Microbial dysbiosis and mortality during mechanical ventilation: a prospective observational study
Cited by: 56
Author(s): Daphnée Lamarche, Jennie Johnstone, Nicole Zytaruk, France Clarke, Lori Hand, Dessi Loukov, Jake C. Szamosi, Laura Rossi, L. Patrick Schenck, Chris P. Verschoor, Ellen McDonald, Maureen O. Meade, John C. Marshall, Dawn M. E. Bowdish, Tim Karachi, Diane Heels‐Ansdell, Deborah J. Cook, Michael G. Surette
Software Mentions: 4
Published: over 7 years ago

10.3390/plants9010052

Changes in an Arbuscular Mycorrhizal Fungi Community Along an Environmental Gradient
Cited by: 29
Author(s): Larissa Vieira, Danielle Karla Alves da Silva, Indra Elena Costa Escobar, Julyana Maria da Silva, Ingrid Andrêssa de Moura, Fritz Oehl, Gladstone Alves da Silva
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0214965

Differences in Tsimane children’s growth outcomes and associated determinants as estimated by WHO standards vs. within-population references
Cited by: 13
Author(s): Mary C. Martin, Aaron D. Blackwell, Hillard Kaplan, Michael Gurven
Software Mentions: 4
Published: over 7 years ago

10.1186/s40104-020-00498-3

Dietary Bacillus spp. enhanced growth and disease resistance of weaned pigs by modulating intestinal microbiota and systemic immunity
Cited by: 34
Author(s): Yijie He, Cynthia Jinno, Kwang‐Wook Kim, Zhaohai Wu, Bin Tan, Xunde Li, Rose Whelan, Yanhong Liu
Software Mentions: 4
Published: almost 6 years ago

10.3390/metabo10060220

Non-Targeted Metabolite Profiles and Sensory Properties Elucidate Commonalities and Differences of Wines Made with the Same Variety but Different Cultivar Clones
Cited by: 6
Author(s): Álvaro Cuadros-Inostroza, Claudio Verdugo-Alegría, Lothar Willmitzer, Yerko Moreno-Simunovic, José G. Vallarino
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0118113

The Impact of Predation by Marine Mammals on Patagonian Toothfish Longline Fisheries
Cited by: 27
Author(s): Marta Söffker, Phil Trathan, J. Moir Clark, Martin A. Collins, Mark Belchier, Richard Scott
Software Mentions: 4
Published: over 11 years ago

10.1186/s13071-021-04579-8

Blood meal source and mixed blood-feeding influence gut bacterial community composition in Aedes aegypti
Cited by: 14
Author(s): Ephantus J. Muturi, Teresia Muthoni Njoroge, Christopher A. Dunlap, Carla E. Cáceres
Software Mentions: 4
Published: over 5 years ago

10.3897/zookeys.1041.63884

Ichthyofauna in the last free-flowing river of the Lower Iguaçu basin: the importance of tributaries for conservation of endemic species
Cited by: 4
Author(s): Suelen Fernanda Ranucci Pini, Maristela Cavicchioli Makrakis, Mayara Pereira Neves, Sérgio Makrakis, Oscar Akio Shibatta, Elaine Antoniassi Luiz Kashiwaqui
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-019-0776-5

Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities
Cited by: 55
Author(s): Eslam O. Osman, David J. Suggett, Christian R. Voolstra, D. Tye Pettay, Dave R. Clark, Claudia Pogoreutz, Eugenia M. Sampayo, Mark E. Warner, David J. Smith
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0232248

Caribou in the cross-fire? Considering terrestrial lichen forage in the face of mountain pine beetle (Dendroctonus ponderosae) expansion
Cited by: 4
Author(s): Barry R. Nobert, Terrence A. Larsen, Karine E. Pigeon, Laura Finnegan
Software Mentions: 4
Published: over 6 years ago

10.1093/bioinformatics/btz887

Using deep learning to associate human genes with age-related diseases
Cited by: 9
Author(s): Fábio Fabris, Daniel H. Palmer, Khalid M. Salama, João Pedro de Magalhães, Alex A. Freitas
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-015-1716-9

Transcriptional response of Atlantic salmon families to Piscirickettsia salmonis infection highlights the relevance of the iron-deprivation defence system
Cited by: 66
Author(s): Rodrigo Pulgar, Christian Hödar, Dante Travisany, Alejandro Zúñiga, Cristina Ruesca Domínguez, Alejandro Maass, Maurício González, Verónica Cambiazo
Software Mentions: 4
Published: about 11 years ago

10.3389/fpls.2019.01697

Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management
Cited by: 19
Author(s): Paula Harkes, Joris J.M. van Steenbrugge, S.J.J. van den Elsen, Afnan Khalil Ahmad Suleiman, J.J. de Haan, M.H.M. Holterman, J. Helder
Software Mentions: 4
Published: over 6 years ago

10.1099/mgen.0.000108

A population genomics approach to exploiting the accessory 'resistome' of Escherichia coli
Cited by: 18
Author(s): Robert Goldstone, David George Emslie Smith
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0239026

Impact of COVID-19 epidemic curtailment strategies in selected Indian states: An analysis by reproduction number and doubling time with incidence modelling
Cited by: 14
Author(s): Arun Mitra, Abhijit Pakhare, Adrija Roy, Ankur Joshi
Software Mentions: 4
Published: almost 6 years ago

10.1093/gbe/evu073

An Expanded Genomic Representation of the Phylum Cyanobacteria
Cited by: 260
Author(s): Rochelle M. Soo, Connor T. Skennerton, Yuji Sekiguchi, Michael Imelfort, Samuel J. Paech, Paul G. Dennis, Jason A. Steen, Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz
Software Mentions: 4
Published: over 12 years ago

10.3389/fmicb.2019.01206

Propionate-Producing Consortium Restores Antibiotic-Induced Dysbiosis in a Dynamic in vitro Model of the Human Intestinal Microbial Ecosystem
Cited by: 70
Author(s): Racha El Hage, Emma Hernandez-Sanabria, Marta Calatayud, Ruben Props, Tom Van de Wiele
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0194056

Genetic structure of wild pea (Pisum sativum subsp. elatius) populations in the northern part of the Fertile Crescent reflects moderate cross-pollination and strong effect of geographic but not environmental distance
Cited by: 59
Author(s): Petr Smýkal, Oldřich Trněný, Jan Brus, Pavel Hanáček, Abhishek Rathore, Rani Das Roma, Vilém Pechanec, Martin Duchoslav, Debjyoti Bhattacharyya, Michael Bariotakis, Stergios Pirintsos, Jens Berger, Cengiz Toker
Software Mentions: 4
Published: over 8 years ago

10.3389/fonc.2019.01057

Prognostic Value of Texture Analysis Based on Pretreatment DWI-Weighted MRI for Esophageal Squamous Cell Carcinoma Patients Treated With Concurrent Chemo-Radiotherapy
Cited by: 8
Author(s): Zhenjiang Li, Chun Han, Lan Wang, Jian Zhu, Yong Yin, Baosheng Li
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2020.00980

Comparison of Bacterial and Fungal Composition and Their Chemical Interaction in Free Tropospheric Air and Snow Over an Entire Winter Season at Mount Sonnblick, Austria
Cited by: 11
Author(s): Nora Els, Marion Greilinger, Michael Reisecker, Romie Tignat-Perrier, Kathrin Baumann‐Stanzer, Anne Kasper-Giebl, Birgit Sattler, Catherine Larose
Software Mentions: 4
Published: about 6 years ago

10.1186/s12911-016-0374-4

Introduction of digital speech recognition in a specialised outpatient department: a case study
Cited by: 8
Author(s): Christoph Ahlgrim, Oliver Maenner, Manfred W. Baumstark
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0227530

Soil solution in Swiss forest stands: A 20 year's time series
Cited by: 11
Author(s): Sabine Braun, Simon Tresch, Sabine Augustin
Software Mentions: 4
Published: about 6 years ago

10.1186/s40168-019-0721-7

Longitudinal investigation of the swine gut microbiome from birth to market reveals stage and growth performance associated bacteria
Cited by: 231
Author(s): Xiaofan Wang, Tsung Cheng Tsai, Feilong Deng, Xiaoyuan Wei, Jianmin Chai, J. S. Knapp, J. K. Apple, C. V. Maxwell, Jung Ae Lee, Ying Liu, Jiangchao Zhao
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2021.708475

Spatiotemporal Assembly of Bacterial and Fungal Communities of Seed-Seedling-Adult in Rice
Cited by: 8
Author(s): Hyun Kim, Yong-Hwan Lee
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2018.00272

Ethylene-Related Gene Expression Networks in Wood Formation
Cited by: 34
Author(s): Carolin Seyfferth, Bernard A. Wessels, Soile Jokipii-Lukkari, Björn Sundberg, Nicolas Delhomme, Judith Felten, Hannele Tuominen
Software Mentions: 4
Published: over 8 years ago

10.1186/s12986-020-00505-4

Oatmeal induced gut microbiota alteration and its relationship with improved lipid profiles: a secondary analysis of a randomized clinical trial
Cited by: 9
Author(s): Mengyao Ye, Jianqin Sun, Yanqiu Chen, Qian Ren, Zhen Li, Ying Zhao, Yue Pan, Huijun Xue
Software Mentions: 4
Published: almost 6 years ago