10.3389/fimmu.2018.00699

Clec9a-Mediated Ablation of Conventional Dendritic Cells Suggests a Lymphoid Path to Generating Dendritic Cells In Vivo
Cited by: 18
Author(s): Johanna Salvermoser, Janneke van Blijswijk, Nikos E. Papaioannou, Stephan Rambichler, Mária Pásztói, Dalia Pakalniškytė, Neil C. Rogers, Selina J. Keppler, Tobias Straub, Caetano Reis e Sousa, Barbara U. Schraml
Software Mentions: 4
Published: over 8 years ago

10.3389/fcell.2021.699212

A Novel Six Metastasis-Related Prognostic Gene Signature for Patients With Osteosarcoma
Cited by: 12
Author(s): Di Zheng, Kezhou Xia, Ling Yu, Changtian Gong, Yubo Shi, Wěi Li, Yonglong Qiu, Jian Yang, Weichun Guo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1009036

Polygenic risk for autism spectrum disorder associates with anger recognition in a neurodevelopment-focused phenome-wide scan of unaffected youths from a population-based cohort
Cited by: 5
Author(s): Frank R. Wendt, Carolina Muniz Carvalho, Gita A Pathak, Joel Gelernter, Renato Polimanti
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0179901

Microarray analyses of otospheres derived from the cochlea in the inner ear identify putative transcription factors that regulate the characteristics of otospheres
Cited by: 2
Author(s): Takehiro Iki, Michihiro Tanaka, Shin‐ichiro Kitajiri, Tomoko Kita, Yoshihisa Kawasaki, Akifumi Mizukoshi, Wataru Fujibuchi, Takayuki Nakagawa, Tatsutoshi Nakahata, Juichi Ito, Koichi Omori, Megumu K. Saito
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pntd.0004515

School Water, Sanitation, and Hygiene, Soil-Transmitted Helminths, and Schistosomes: National Mapping in Ethiopia
Cited by: 49
Author(s): Jack E. T. Grimes, Gemechu Tadesse, Kalkidan Mekete, Yonas Wuletaw, Abeba Gebretsadik, Michael French, Wendy Harrison, Lesley Drake, Iain Gardiner, Elodie Yard, Michael R. Templeton
Software Mentions: 4
Published: over 10 years ago

10.1186/s12874-020-01156-y

Psychometric properties of an English short version of the Trier Inventory for chronic Stress
Cited by: 6
Author(s): Katja Petrowski, Elmaer Braehler, Bjarne Schmalbach, Andreas Hinz, Christina Diane Bastianon, Thomas Ritz
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0246027

Procalcitonin, C-reactive protein, neutrophil gelatinase-associated lipocalin, resistin and the APTT waveform for the early diagnosis of serious bacterial infection and prediction of outcome in critically ill children
Cited by: 5
Author(s): Maryke Nielsen, Paul Baines, Rebecca Jennings, Sarah Siner, Ruwanthi Kolamunnage-Donà, Paul Newland, Matthew Peak, Christine Chesters, Graham Jeffers, Colin Downey, Caroline Broughton, Lynsey McColl, Jennifer Preston, Anthony Mckeever, Stéphane Paulus, Nigel Cunliffe, Enitan D. Carrol
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228501

Risk prediction in intrahepatic cholangiocarcinoma: Direct comparison of the MEGNA score and the 8th edition of the UICC/AJCC Cancer staging system
Cited by: 5
Author(s): Felix Hähn, Lukáš Müller, Aline Mähringer‐Kunz, Sebastian Schotten, Christoph Düber, Jan B. Hinrichs, Sabine Maschke, Peter R. Galle, Fabian Bartsch, Hauke Lang, Arndt Weinmann, Roman Kloeckner
Software Mentions: 4
Published: over 6 years ago

10.1093/sleep/zsab035

Sleep health and cognitive function among people with and without HIV: the use of different machine learning approaches
Cited by: 10
Author(s): Davide De Francesco, Caroline Sabin, Alan Winston, Michael Rueschman, Nicki Doyle, Jane Anderson, Jaime H. Vera, Marta Boffito, Memory Sachikonye, Patrick Mallon, Lewis Haddow, Frank A. Post, Susan Redline, Ken M. Kunisaki
Software Mentions: 4
Published: over 5 years ago

10.1093/aobpla/plab015

Ecotypic differentiation of a circumpolar Arctic-alpine species at mid-latitudes: variations in the ploidy level and reproductive system of <i>Vaccinium vitis-idaea</i>
Cited by: 3
Author(s): Akimi Wakui, Gaku Kudo
Software Mentions: 4
Published: over 5 years ago

10.1038/s41438-021-00494-2

Bioinformatic analysis of chromatin organization and biased expression of duplicated genes between two poplars with a common whole-genome duplication
Cited by: 15
Author(s): Le Zhang, Jingtian Zhao, Hao Bi, Xiangyu Yang, Zhiyang Zhang, Yutao Su, Zhenghao Li, Lei Zhang, Brian J. Sanderson, Jianquan Liu, Tao Ma
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.00169

Biogeographic Patterns and Assembly Mechanisms of Bacterial Communities Differ Between Habitat Generalists and Specialists Across Elevational Gradients
Cited by: 43
Author(s): Luo Zhengming, Jinxian Liu, Pengyu Zhao, Tong Jia, Cui Li, Bo Chai
Software Mentions: 4
Published: over 7 years ago

10.3389/fimmu.2020.00594

Expansion of Neutrophils and Classical and Nonclassical Monocytes as a Hallmark in Relapsing-Remitting Multiple Sclerosis
Cited by: 23
Author(s): David Haschka, Piotr Tymoszuk, Gabriel Bsteh, Verena Petzer, Klaus Berek, Igor Theurl, Thomas Berger, Günter Weiß
Software Mentions: 4
Published: over 6 years ago

10.1186/s12888-021-03425-6

The COVID-19 Pandemic Mental Health Questionnaire (CoPaQ): psychometric evaluation and compliance with countermeasures in psychiatric inpatients and non-clinical individuals
Cited by: 19
Author(s): Stephanie Rek, Markus Bühner, Matthias Reinhard, Daniel Freeman, Daniel Keeser, Kristina Adorjan, Peter Falkai, Frank Padberg
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1008518

Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers
Cited by: 10
Author(s): Julian Libiseller-Egger, Jody Phelan, Susana Campino, Fady Mohareb, Taane G. Clark
Software Mentions: 4
Published: over 5 years ago

10.1016/j.biocon.2019.05.011

1980s–2010s: The world's largest mangrove ecosystem is becoming homogeneous
Cited by: 37
Author(s): Swapan Kumar Sarker, Jason Matthiopoulos, Sonia Mitchell, Zahir Ahmed, Md. Bashirul Al Mamun, Richard Reeve
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pcbi.1009370

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders
Cited by: 4
Author(s): Jaie Woodard, Wei Zheng, Zifeng Yang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2019.00493

Genome-Wide Analysis of Lung Adenocarcinoma Identifies Novel Prognostic Factors and a Prognostic Score
Cited by: 10
Author(s): Donglai Chen, Yueqiang Song, Fuquan Zhang, Xiaofan Wang, Erjia Zhu, Xi Zhang, Gening Jiang, Siguang Li, Chang Chen, Yongbing Chen
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0124437

Prognostic Nomogram for Thoracic Esophageal Squamous Cell Carcinoma after Radical Esophagectomy
Cited by: 24
Author(s): Dan Su, Xinming Zhou, Qixun Chen, Yi Jiang, Xun Yang, Weihui Zheng, Kaiyi Tao, Jie Wu, Zhen Yan, Liang Liu, Shaoyuan Wu, Weimin Mao
Software Mentions: 4
Published: over 11 years ago

10.1186/s12898-018-0205-9

Inter-individual consistency in habitat selection patterns and spatial range constraints of female little bustards during the non-breeding season
Cited by: 8
Author(s): Francesc Cuscó, Laura Cardador, Gérard Bota, Manuel B. Morales, Santi Mañosa
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0048996

Statistical Object Data Analysis of Taxonomic Trees from Human Microbiome Data
Cited by: 17
Author(s): Patricio S. La Rosa, Berkley Shands, Elena Deych, Yanjiao Zhou, Erica Sodergren, George M. Weinstock, William D. Shannon
Software Mentions: 4
Published: over 13 years ago

10.1186/s12898-019-0228-x

Both candidate gene and neutral genetic diversity correlate with parasite resistance in female Mediterranean mouflon
Cited by: 14
Author(s): Elodie Portanier, Mathieu Garel, Sébastien Devillard, Daniel Maillard, Jocelyn Poissant, Maxime Galan, Slimania Benabed, Marie-Thérèse Poirel, Jeanne Duhayer, Christian Itty, Gilles Bourgoin
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2020.00573

Phenotypic Responses to and Genetic Architecture of Sterility Following Exposure to Sub-Lethal Temperature During Development
Cited by: 21
Author(s): Martyna K. Zwoinska, Leonor R. Rodrigues, Jon Slate, Rhonda R. Snook
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.736423

Comprehensive Analysis of Splicing Factor and Alternative Splicing Event to Construct Subtype-Specific Prognosis-Predicting Models for Breast Cancer
Cited by: 4
Author(s): He Zhang, Baoai Han, Xingxing Han, Yuying Zhu, Hui Liu, Zhiyong Wang, Yanfen Cui, Ran Tian, Zicong Gao, Ruinan Tian, Sixin Ren, Xiaoyan Zuo, Jianfei Tian, Fei Zhang, Ruifang Niu
Software Mentions: 4
Published: almost 5 years ago

10.1128/mSystems.00319-21

Facial Skin Microbiota-Mediated Host Response to Pollution Stress Revealed by Microbiome Networks of Individual
Cited by: 7
Author(s): Lu Wang, Yining Xu, Chung-Ching Chu, Zehua Jing, Yabin Chen, Jingsong Zhang, Mingming Pu, Tingyan Mi, Yaping Du, Zong-Qi Liang, Chandraprabha Doraiswamy, Tao Zeng, Jiarui Wu, Luonan Chen
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2020.01621

Cortisol-Related Signatures of Stress in the Fish Microbiome
Cited by: 42
Author(s): Tamsyn M. Uren Webster, Deiene Rodríguez‐Barreto, Sofía Consuegra, Carlos García de Leániz
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2020.612840

Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data
Cited by: 3
Author(s): Phillipe Loher, Nestoras Karathanasis
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2019.01057

Prognostic Value of Texture Analysis Based on Pretreatment DWI-Weighted MRI for Esophageal Squamous Cell Carcinoma Patients Treated With Concurrent Chemo-Radiotherapy
Cited by: 8
Author(s): Zhenjiang Li, Chun Han, Lan Wang, Jian Zhu, Yong Yin, Baosheng Li
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2021.670336

Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes
Cited by: 47
Author(s): Danielle Peterson, Kevin S. Bonham, Sophie Rowland, Cassandra Wolos Pattanayak, Vanja Klepac‐Ceraj, Sean Deoni, Viren D’Sa, Muriel Bruchhage, Alexandra Volpe, Jennifer Beauchemin, Caroline Wallace, J. H. Rogers, R. Cano, Jéssica Moreira Fernandes, Elizabeth Walsh, Brittany Rhodes, Matthew J. Huentelman, Candace R. Lewis, Matthew De Both, Marcus Naymik, Susan Carnell, E.N.H. Jansen, Jennifer R. Sadler, Gita Thapaliya, Monique K. LeBourgeois, Hans G. Mueller, Jane-Ling Wang, Changbo Zhu, Yaqing Chang, Joseph M. Braun
Software Mentions: 4
Published: about 5 years ago

10.1186/s12898-020-00317-3

Endozoochorous dispersal by herbivores and omnivores is mediated by germination conditions
Cited by: 6
Author(s): Soroor Karimi, Mahmoud‐Reza Hemami, Mostafa Tarkesh, Christophe Baltzinger
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12986-020-00505-4

Oatmeal induced gut microbiota alteration and its relationship with improved lipid profiles: a secondary analysis of a randomized clinical trial
Cited by: 9
Author(s): Mengyao Ye, Jianqin Sun, Yanqiu Chen, Qian Ren, Zhen Li, Ying Zhao, Yue Pan, Huijun Xue
Software Mentions: 4
Published: almost 6 years ago

10.3390/cancers12030632

Model-Based Integration Analysis Revealed Presence of Novel Prognostic miRNA Targets and Important Cancer Driver Genes in Triple-Negative Breast Cancers
Cited by: 6
Author(s): Masood Zaka, Chris W. Sutton, Yonghong Peng, Savas Konur
Software Mentions: 4
Published: over 6 years ago

10.1186/s12889-018-5234-y

Development and validation of a new knowledge, attitude, belief and practice questionnaire on leptospirosis in Malaysia
Cited by: 24
Author(s): Wan Mohd Zahiruddin, Wan Nor Arifin, Mohd Nazri Shafei, Surianti Sukeri, Zawaha Idris, Rahman Abu Bakar, Rukman Awang Hamat, Malina Osman, Tengku Zetty Maztura Tengku Jamaludin, Arumugam Pathman, Ab Rahman Mas-Harithulfadhli-Agus, Norazlin Idris, Binti Samsudin Suhailah, Siti Nor Sakinah Saudi, Nor Liza Abdullah, Noramira Nozmi, Abdul Wahab Zainuddin, Aziah Daud
Software Mentions: 4
Published: over 8 years ago

10.3389/fncir.2017.00077

Radiate and Planar Multipolar Neurons of the Mouse Anteroventral Cochlear Nucleus: Intrinsic Excitability and Characterization of their Auditory Nerve Input
Cited by: 19
Author(s): Ruili Xie, Paul B. Manis
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13104-017-2839-7

Item response theory analysis of the Utrecht Work Engagement Scale for Students (UWES-S) using a sample of Japanese university and college students majoring medical science, nursing, and natural science
Cited by: 11
Author(s): Takashi Tsubakita, Kazuyo Shimazaki, Hiroshi Ito, Nobuo Kawazoe
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0104504

Identification of Significant Features by the Global Mean Rank Test
Cited by: 17
Author(s): Martin Klammer, J. Nikolaj Dybowski, Daniel Hoffmann, Christoph Schaab
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pgen.1008466

Paralog buffering contributes to the variable essentiality of genes in cancer cell lines
Cited by: 59
Author(s): Barbara De Kegel, Colm J. Ryan
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0237217

Catastrophic health expenditures arising from out-of-pocket payments: Evidence from South African income and expenditure surveys
Cited by: 19
Author(s): Steven F. Koch, Naomi Setshegetso
Software Mentions: 4
Published: almost 6 years ago

10.1111/j.1365-294X.2010.04838.x

Multiple hybridization events between <i>Drosophila simulans</i> and <i>Drosophila mauritiana</i> are supported by mtDNA introgression
Cited by: 37
Author(s): Maria D. S. Nunes, Pablo Orozco-ter Wengel, Michaela Kreissl, Christian Schlötterer
Software Mentions: 4
Published: almost 16 years ago

10.1186/s12862-016-0671-7

Is multiple nest building an adequate strategy to cope with inter-species nest usurpation?
Cited by: 26
Author(s): Petra Sumasgutner, Juan Martínez San Millán, Odette E. Curtis, Ann Koelsag, Arjun Amar
Software Mentions: 4
Published: about 10 years ago

10.1186/s12864-019-6088-0

7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Cited by: 10
Author(s): Jonas Ibn-Salem, Miguel A. Andrade‐Navarro
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-017-18480-x

RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients
Cited by: 51
Author(s): Jungmok You, Susan M. Corley, Li Wen, Chris Hodge, Roland Hӧllhumer, Michele C. Madigan, Marc R. Wilkins, Gerard Sutton
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pcbi.1004809

QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks
Cited by: 11
Author(s): Asa Thibodeau, Eladio J. Márquez, Oscar Junhong Luo, Yijun Ruan, Francesca Menghi, Dong-Guk Shin, Michael L. Stitzel, Paola Vera-Licona, Duygu Ucar
Software Mentions: 4
Published: about 10 years ago

10.1186/s12864-015-1716-9

Transcriptional response of Atlantic salmon families to Piscirickettsia salmonis infection highlights the relevance of the iron-deprivation defence system
Cited by: 66
Author(s): Rodrigo Pulgar, Christian Hödar, Dante Travisany, Alejandro Zúñiga, Cristina Ruesca Domínguez, Alejandro Maass, Maurício González, Verónica Cambiazo
Software Mentions: 4
Published: about 11 years ago

10.1186/gb-2014-15-2-r21

Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans
Cited by: 46
Author(s): Cristina González-Aguilera, Kohta Ikegami, Cristina de la Cruz Ayuso, Alberto de Luis, María Íñiguez, Juan Cabello, Jason D. Lieb, Peter Askjaer
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0201358

How selfish is a thirsty man? A pilot study on comparing sharing behavior with primary and secondary rewards
Cited by: 5
Author(s): Astrid Kause, Oliver Vitouch, Judith Glück
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.7627

Challenges and opportunities for comparative studies of survival rates: An example with male pinnipeds
Cited by: 1
Author(s): Jamie L. Brusa, Jay J. Rotella, Katharine M. Banner, Patrick R. Hutchins
Software Mentions: 4
Published: about 5 years ago

10.1080/15384101.2016.1261765

Genome-wide screen of cell-cycle regulators in normal and tumor cells identifies a differential response to nucleosome depletion
Cited by: 24
Author(s): Maria Sokolova, Mikko Turunen, Oliver Mortusewicz, Teemu Kivioja, Patrick Herr, Anna Vähärautio, Mikael Björklund, Minna Taipale, Thomas Helleday, Jussi Taipale
Software Mentions: 4
Published: over 9 years ago

10.3389/fgene.2020.01017

Identification of a Novel Signature and Construction of a Nomogram Predicting Overall Survival in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Xiangkun Wu, Zhijian Zhao, Aisha Khan, Chao Cai, Daojun Lv, Danan Gu, Yongda Liu
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pntd.0007241

Detection of classic and cryptic Strongyloides genotypes by deep amplicon sequencing: A preliminary survey of dog and human specimens collected from remote Australian communities
Cited by: 26
Author(s): Meruyert Beknazarova, Joel Barratt, Richard S. Bradbury, Meredith Lane, Harriet Whiley, Kirstin Ross
Software Mentions: 4
Published: almost 7 years ago

10.3389/fnins.2017.00398

Machine Learning Approach for Classifying Multiple Sclerosis Courses by Combining Clinical Data with Lesion Loads and Magnetic Resonance Metabolic Features
Cited by: 45
Author(s): Adrian Ion-Mărgineanu, G. Kocevar, Claudio Stamile, Diana M. Sima, Françoise Durand‐Dubief, Sabine Van Huffel, Dominique Sappey-Marinier
Software Mentions: 4
Published: about 9 years ago

10.1186/s12935-021-02069-6

Integrative analysis of ceRNA network reveals functional lncRNAs associated with independent recurrent prognosis in colon adenocarcinoma
Cited by: 11
Author(s): Yinling Mao, Jiachen Lv, Li Jiang, Yihui Wang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-016-1158-7

DISMISS: detection of stranded methylation in MeDIP-Seq data
Cited by: 6
Author(s): Umar Niazi, Kathrin K. Geyer, Martin Vickers, Karl F. Hoffmann, Martin Swain
Software Mentions: 4
Published: about 10 years ago

10.3389/fped.2020.583630

Respiratory Symptoms in Post-infancy Children. A Dutch Pediatric Cohort Study
Cited by: 3
Author(s): Esther de Vries, R.W.N.M. van Hout
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.614160

An Eight-CpG-based Methylation Classifier for Preoperative Discriminating Early and Advanced-Late Stage of Colorectal Cancer
Cited by: 1
Author(s): Ji Hu, Fu-Ying Zhao, Bin Huang, Ran Jing, Meiyuan Chen, Hailin Liu, You-Song Deng, Xia Zhao, Xiaofan Han
Software Mentions: 4
Published: over 5 years ago

10.1186/s12862-014-0240-x

Sexual dimorphism and natural variation within and among species in the Drosophilaretinal mosaic
Cited by: 30
Author(s): Maarten Hilbrant, Isabel Almudí, Daniel J. Leite, Linta Kuncheria, Nico Posnien, Maria D. S. Nunes, Alistair P. McGregor
Software Mentions: 4
Published: over 11 years ago

10.3389/fphys.2020.00049

Growing Up in a Changing Climate: How Temperature Affects the Development of Morphological, Behavioral and Physiological Traits of a Marsupial Mammal
Cited by: 8
Author(s): Clare Stawski, Fritz Geiser
Software Mentions: 4
Published: over 6 years ago

10.1098/rsos.181770

Ecosystem services and ecological degradation of communal wetlands in a South African biodiversity hotspot
Cited by: 10
Author(s): A Owethu Pantshwa, Falko T. Buschke
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-020-07100-0

Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus
Cited by: 16
Author(s): Marina Athanasouli, Hanh Witte, Christian Weiler, Tobias Loschko, Gabi Eberhardt, Ralf J. Sommer, Christian Rödelsperger
Software Mentions: 4
Published: almost 6 years ago

10.3389/fphys.2021.682394

Heterothermy as the Norm, Homeothermy as the Exception: Variable Torpor Patterns in the South American Marsupial Monito del Monte (Dromiciops gliroides)
Cited by: 21
Author(s): Roberto F. Nespolo, Carlos Mejías, Angelo Espinoza, Roberto F. Nespolo, Enrico L. Rezende, Francisco E. Fontúrbel, Francisco Bozinovic
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0232384

Socio-ecological network structures from process graphs
Cited by: 11
Author(s): Angelyn R. Lao, Heriberto Cabezas, Ákos Orosz, Ferenc Friedler, Raymond R. Tan
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2156-15-24

A genome-wide study of de novo deletions identifies a candidate locus for non-syndromic isolated cleft lip/palate risk
Cited by: 21
Author(s): Samuel G. Younkin, Robert B. Scharpf, Holger Schwender, Margaret M. Parker, Alan F. Scott, Mary L. Marazita, Terri H. Beaty, Ingo Ruczinski
Software Mentions: 4
Published: over 12 years ago

10.3390/genes10030181

ProtParCon: A Framework for Processing Molecular Data and Identifying Parallel and Convergent Amino Acid Replacements
Cited by: 4
Author(s): Fei Yuan, Hoa Nguyen, Dan Graur
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0235144

A novel scaling methodology to reduce the biases associated with missing data from commercial activity monitors
Cited by: 6
Author(s): Ruairi O’Driscoll, Jake Turicchi, Cristiana Duarte, Joanna Michałowska, Sofus C. Larsen, António Labisa Palmeira, Berit Lilienthal Heitmann, Graham Horgan, R. James Stubbs
Software Mentions: 4
Published: about 6 years ago

10.3389/fimmu.2021.695806

An Unbiased Machine Learning Exploration Reveals Gene Sets Predictive of Allograft Tolerance After Kidney Transplantation
Cited by: 7
Author(s): Qiang Fu, Divyansh Agarwal, Kevin Deng, Rudy Matheson, Hongji Yang, Wei Liang, Ran Qing, Shaoping Deng, James F. Markmann
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0163344

Differing Alterations of Two Esca Associated Fungi, Phaeoacremonium aleophilum and Phaeomoniella chlamydospora on Transcriptomic Level, to Co-Cultured Vitis vinifera L. calli
Cited by: 6
Author(s): Jochen Fischer, Stéphane Compant, Romain Pierron, Markus Gorfer, Alban Jacques, Eckhard Thines, Harald Berger
Software Mentions: 4
Published: almost 10 years ago

10.7717/peerj.9818

Applied phylogeography of<i>Cyclopia intermedia</i>(Fabaceae) highlights the need for ‘duty of care’ when cultivating honeybush
Cited by: 4
Author(s): Nicholas C. Galuszynski, Alastair J. Potts
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmed.2020.00451

Evaluating Distribution and Prognostic Value of New Tumor-Infiltrating Lymphocytes in HCC Based on a scRNA-Seq Study With CIBERSORTx
Cited by: 13
Author(s): Lixing Li, Lu Shen, Jianchao Ma, Qiang Zhou, M Li, Hao Wu, Muyun Wei, Di Zhang, Ting Wang, Shengying Qin, Tonghai Xing
Software Mentions: 4
Published: almost 6 years ago

10.1093/ve/vey027

Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains
Cited by: 24
Author(s): James R. Otieno, Everlyn Kamau, John W Oketch, Joyce M. Ngoi, Alex Gichuki, Špela Binter, Grieven P. Otieno, Mwanajuma Ngama, Charles N. Agoti, Patricia A. Cane, Paul Kellam, Matthew Cotten, Philippe Lemey, D. James Nokes
Software Mentions: 4
Published: about 8 years ago

10.1155/2018/2046269

Instant Feedback Rapid Prototyping for GPU-Accelerated Computation, Manipulation, and Visualization of Multidimensional Data
Cited by: 1
Author(s): Maximilian Malek, Christoph Wilhelm Sensen
Software Mentions: 4
Published: about 8 years ago

10.1093/gbe/evz127

Deleterious Mutation Accumulation in Arabidopsis thaliana Pollen Genes: A Role for a Recent Relaxation of Selection
Cited by: 13
Author(s): Mark C. Harrison, Eamonn B. Mallon, D. Twell, Robert L. Hammond
Software Mentions: 4
Published: about 7 years ago

10.3389/fimmu.2019.02186

Common Nodes of Virus–Host Interaction Revealed Through an Integrated Network Analysis
Cited by: 65
Author(s): Korbinian Bösl, Aleksandr Ianevski, Thoa Thi Than, Petter I. Andersen, Suvi Kuivanen, Mona Teppor, Eva Žusinaite, Uga Dumpis, Astra Vitkauskienė, Rebecca Jane Cox, Hannimari Kallio‐Kokko, Anders Bergqvist, Tanel Tenson, Andres Merits, Valentyn Oksenych, Magnar Bjørås, Marit W. Anthonsen, David Shum, Mari Kaarbø, Olli Vapalahti, Marc P. Windisch, Giulio Superti‐Furga, Berend Snijder, Denis E. Kainov, Richard K. Kandasamy
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13058-018-0933-y

HER2 is not a cancer subtype but rather a pan-cancer event and is highly enriched in AR-driven breast tumors
Cited by: 44
Author(s): Anneleen Daemen, Gerard Manning
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0145585

Epigenetic Alterations in Density Selected Human Spermatozoa for Assisted Reproduction
Cited by: 20
Author(s): Bolan Yu, Hua Zhou, Min Liu, Ting Zheng, Lu Jiang, Mei Zhao, Xiaohong Xu, Zhaofeng Huang
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-021-82547-z

An evaluation of approaches for rare variant association analyses of binary traits in related samples
Cited by: 4
Author(s): Ming-Huei Chen, Achilleas Pitsillides, Qiong Yang
Software Mentions: 4
Published: over 5 years ago

10.3389/frai.2021.685298

Sysrev: A FAIR Platform for Data Curation and Systematic Evidence Review
Cited by: 25
Author(s): Thomas Bozada, James Borden, Jeffrey Workman, Mardo Del Cid, Jennifer Malinowski, Thomas Luechtefeld
Software Mentions: 4
Published: almost 5 years ago

10.1186/1752-0509-4-121

Gene set analysis exploiting the topology of a pathway
Cited by: 62
Author(s): M. Sofia Massa, Monica Chiogna, Chiara Romualdi
Software Mentions: 4
Published: almost 16 years ago

10.1371/journal.pone.0226128

Fecal transplant prevents gut dysbiosis and anxiety-like behaviour after spinal cord injury in rats
Cited by: 70
Author(s): Emma K.A. Schmidt, Abel Torres-Espín, Pamela Raposo, Karen Madsen, Kristina A. Kigerl, Phillip G. Popovich, Keith K. Fenrich, Karim Fouad
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-98249-5

Psychological factors shaping public responses to COVID-19 digital contact tracing technologies in Germany
Cited by: 14
Author(s): Anastasia Kozyreva, Philipp Lorenz-Spreen, Stephan Lewandowsky, Paul Michael Garrett, Stefan M. Herzog, Thorsten Pachur, Ralph Hertwig
Software Mentions: 4
Published: almost 5 years ago

10.1186/1471-2105-12-29

Investigating the effect of paralogs on microarray gene-set analysis
Cited by: 0
Author(s): Aline Faure, Cathal Seoighe, Nicola Mulder
Software Mentions: 4
Published: over 15 years ago

10.1371/journal.pone.0045708

Cooperativity of Stress-Responsive Transcription Factors in Core Hypoxia-Inducible Factor Binding Regions
Cited by: 32
Author(s): Diego Villar, Amaya Ortiz-Barahona, Laura Gómez-Maldonado, Nuria Pescador, Fátima Sánchez-Cabo, Hubert Hackl, Blanca Rodriguez, Zlatko Trajanoski, Ana Dopazo, Tim Hui-Ming Huang, Pearlly S. Yan, Luis del Peso
Software Mentions: 4
Published: almost 14 years ago

10.3389/fmolb.2020.581354

A Prognostic Model of 15 Immune-Related Gene Pairs Associated With Tumor Mutation Burden for Hepatocellular Carcinoma
Cited by: 28
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2020.571641

Identification of a Novel Tumor Microenvironment–Associated Eight-Gene Signature for Prognosis Prediction in Lung Adenocarcinoma
Cited by: 36
Author(s): Chi Ma, Huan Luo, Jing Cao, Xiangyu Zheng, Jinjun Zhang, Yanmin Zhang, Zongqiang Fu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12911-018-0717-4

A classification framework for exploiting sparse multi-variate temporal features with application to adverse drug event detection in medical records
Cited by: 29
Author(s): Francesco Bagattini, Isak Karlsson, Jonathan Rebane, Panagiotis Papapetrou
Software Mentions: 4
Published: over 7 years ago

10.1007/s10618-016-0483-9

The great time series classification bake off: a review and experimental evaluation of recent algorithmic advances
Cited by: 864
Author(s): Anthony Bagnall, Jason Lines, Aaron Bostrom, James Large, Eamonn Keogh
Software Mentions: 4
Published: over 9 years ago

10.3389/fmolb.2021.632950

Comprehensive Metabolomics Identified the Prominent Role of Glycerophospholipid Metabolism in Coronary Artery Disease Progression
Cited by: 10
Author(s): Hui Chen, Zixian Wang, Min Qin, Bin Zhang, Li Jen Lin, Qin Ma, Chen Liu, Xiaoping Chen, Hanping Li, Wen‐Ter Lai, Shilong Zhong
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-017-1881-8

K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity
Cited by: 14
Author(s): Chang Sik Kim, Martyn Winn, Vipin Sachdeva, Kirk E. Jordan
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmolb.2021.670241

Autophagy-Related Gene Pairs Signature for the Prognosis of Hepatocellular Carcinoma
Cited by: 5
Author(s): Yiming Luo, Furong Liu, Shenqi Han, Yongqiang Qi, Xinsheng Hu, Chenyang Zhou, Huifang Liang, Zhiwei Zhang
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.4908

Climate and food diversity as drivers of mammal diversity in Inner Mongolia
Cited by: 8
Author(s): Gang Feng, Hui Yan, Xueting Yang
Software Mentions: 4
Published: over 7 years ago

10.3389/fneur.2021.706576

Extrahippocampal Radiomics Analysis Can Potentially Identify Laterality in Patients With MRI-Negative Temporal Lobe Epilepsy
Cited by: 3
Author(s): E-Nae Cheong, Ji Eun Park, Da Eun Jung, Woo Hyun Shim
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-10-358

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
Cited by: 90
Author(s): Enrico Glaab, Jonathan M. Garibaldi, Natalio Krasnogor
Software Mentions: 4
Published: almost 17 years ago

10.1371/journal.pcbi.1009105

Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis
Cited by: 40
Author(s): Cecilia Wieder, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Florence Vinson, Juliette Cooke, Rachel Lai, Jacob G. Bundy, Fabien Jourdan, Timothy M. D. Ebbels
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijerph17082964

The Association of Work Satisfaction and Burnout Risk in Endoscopy Nursing Staff—A Cross-Sectional Study Using Canonical Correlation Analysis
Cited by: 12
Author(s): Charles Christian Adarkwah, Oliver Hirsch
Software Mentions: 4
Published: over 6 years ago

10.1186/1753-6561-5-S9-S19

Gene-based partial least-squares approaches for detecting rare variant associations with complex traits
Cited by: 8
Author(s): Asuman Türkmen, Shili Lin
Software Mentions: 4
Published: over 14 years ago

10.1186/s12864-020-06789-3

Distinctions between sex and time in patterns of DNA methylation across puberty
Cited by: 11
Author(s): Sarah R. Moore, Kathryn L. Humphreys, Natalie L. Colich, Elena Goetz Davis, David Lin, Julia L. MacIsaac, Michæl S. Kobor, Ian H. Gotlib
Software Mentions: 4
Published: about 6 years ago

10.3390/e21040436

Assessing the Performance of Hierarchical Forecasting Methods on the Retail Sector
Cited by: 13
Author(s): José Manuel Oliveira, Patrícia Ramos
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.15614

Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes
Cited by: 35
Author(s): Yehudit Hasin-Brumshtein, Khan Ah, Farhad Hormozdiari, Calvin Pan, Brian W. Parks, Vladislav Petyuk, Paul Piehowski, Anneke Brümmer, Matteo Pellegrini, Xinshu Xiao, Eleazar Eskin, Richard Smith, Aldons J. Lusis, Desmond J. Smith
Software Mentions: 4
Published: almost 10 years ago

10.1186/s13148-020-00990-7

DNA methylation epi-signature is associated with two molecularly and phenotypically distinct clinical subtypes of Phelan-McDermid syndrome
Cited by: 25
Author(s): Laila C. Schenkel, Erfan Aref‐Eshghi, Kathleen Rooney, Jennifer Kerkhof, Michael A. Levy, Haley McConkey, R. Curtis Rogers, Katy Phelan, Sara M. Sarasua, Lavanya Jain, Rini Pauly, Luigi Boccuto, Barbara R. DuPont, Gerarda Cappuccio, Nicola Brunetti‐Pierri, Charles E. Schwartz, Bekim Sadiković
Software Mentions: 4
Published: over 5 years ago

10.1007/s00204-017-2067-x

Predicting in vivo effect levels for repeat-dose systemic toxicity using chemical, biological, kinetic and study covariates
Cited by: 11
Author(s): Lisa Truong, Gladys Ouédraogo, Ly Ly Pham, Jacques Clouzeau, Sophie Loisel-Joubert, Delphine Blanchet, Hicham Noçairi, Woodrow Setzer, Richard S. Judson, Christopher M. Grulke, Kamel Mansouri, Matthew T. Martin
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12870-020-02611-0

Genome-wide association study reveals the genetic basis of fiber quality traits in upland cotton (Gossypium hirsutum L.)
Cited by: 18
Author(s): Wei Liu, Chengxiang Song, Zhongying Ren, Zhiqiang Zhang, Xinwu Pei, Yangai Liu, Kunlun He, Fei Zhang, Junjie Zhao, Jie Zhang, Xingxing Wang, Daigang Yang, Wei Li
Software Mentions: 4
Published: almost 6 years ago