Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1371/journal.pone.0174930
https://doi.org/10.1371/journal.pone.0174930
Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater
Cited by: 24
Author(s): William B. Ludington, Thaddeus D. Seher, Olin Applegate, Xunde Li, J.I. Kliegman, Charles Langelier, Edward R. Atwill, Thomas Harter, Joseph L. DeRisi
Published: over 7 years ago
Software Mentions 4
cran: kmer
Fast K-Mer Counting and Clustering for Biological Sequence AnalysisPapers that mentioned: 240
pypi: EMIRGE
EMIRGE reconstructs full length sequences from short sequencing readsPapers that mentioned: 94
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306