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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pone.0174930

https://doi.org/10.1371/journal.pone.0174930

Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater

Cited by: 24
Author(s): William B. Ludington, Thaddeus D. Seher, Olin Applegate, Xunde Li, J.I. Kliegman, Charles Langelier, Edward R. Atwill, Thomas Harter, Joseph L. DeRisi
Published: over 8 years ago

Software Mentions 4

cran: kmer
Fast K-Mer Counting and Clustering for Biological Sequence Analysis
Papers that mentioned: 240
Very Likely Science (100)
cran: RDP
The Ramer-Douglas-Peucker Algorithm
Papers that mentioned: 1,243
Very Likely Science (85)
pypi: EMIRGE
EMIRGE reconstructs full length sequences from short sequencing reads
Papers that mentioned: 94
Very Likely Science (100)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
Very Likely Science (100)