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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-015-0611-7

https://doi.org/10.1186/s13059-015-0611-7

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

Cited by: 206
Author(s): Stephen Nayfach, Katherine S. Pollard
Published: over 10 years ago

Software Mentions 4

bioconductor: SRAdb
A compilation of metadata from NCBI SRA and tools
Papers that mentioned: 20
Very Likely Science (100)
cran: optimx
Expanded Replacement and Extension of the 'optim' Function
Papers that mentioned: 21
Very Likely Science (75)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
Very Likely Science (100)
pypi: MicrobeCensus
A command-line tool for estimating average genome size from shotgun sequence data
Papers that mentioned: 25
Very Likely Science (100)