10.3390/ijms20215343

Discrimination of DNA Methylation Signal from Background Variation for Clinical Diagnostics
Cited by: 8
Author(s): Robersy Sánchez, Xiaodong Yang, Thomas A. Maher, Sally A. Mackenzie
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13072-016-0075-3

Profiling genome-wide DNA methylation
Cited by: 245
Author(s): Wai-Shin Yong, Fei‐Man Hsu, Pao‐Yang Chen
Software Mentions: 4
Published: about 10 years ago

10.1186/s12864-021-07845-2

ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw
Cited by: 4
Author(s): Stefan Milosavljevic, Tony Kuo, Samuele Decarli, Lucas Mohn, Jun Sese, Kentaro Shimizu, Rie Shimizu‐Inatsugi, Mark D. Robinson
Software Mentions: 4
Published: about 5 years ago

10.1186/s40164-018-0123-8

Methylome of human senescent hematopoietic progenitors
Cited by: 5
Author(s): Stephen Capone, Anthony Colombo, Benjamin K. Johnson, Tim Triche, Giridharan Ramsingh
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-82910-0

Mutational processes in cancer preferentially affect binding of particular transcription factors
Cited by: 2
Author(s): Mo Liu, Arnoud Boot, Alvin Wei Tian Ng, Raluca Gordân, Steven G. Rozen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0167980

climwin: An R Toolbox for Climate Window Analysis
Cited by: 94
Author(s): Liam D. Bailey, Martijn van de Pol
Software Mentions: 4
Published: over 9 years ago

10.1186/s12918-018-0596-4

Single molecules can operate as primitive biological sensors, switches and oscillators
Cited by: 10
Author(s): Rosa D. Hernansaiz-Ballesteros, Luca Cardelli, Attila Csikász‐Nagy
Software Mentions: 4
Published: about 8 years ago

10.1186/s12936-021-03726-x

The assembly effect: the connectedness between populations is a double‐edged sword for public health interventions
Cited by: 2
Author(s): Sai Thein Than Tun, Daniel M. Parker, Ricardo Águas, Lisa J. White
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-019-2845-y

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions
Cited by: 29
Author(s): Akanksha Srivastava, Yuliya V. Karpievitch, Steven R. Eichten, Justin O. Borevitz, Ryan Lister
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.44279

Plant–necrotroph co-transcriptome networks illuminate a metabolic battlefield
Cited by: 42
Author(s): Wei Zhang, Jason A. Corwin, Daniel Copeland, Julie E. Feusier, Robert Eshbaugh, David E. Cook, Suzi Atwell, Daniel J. Kliebenstein
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pcbi.1008837

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model
Cited by: 36
Author(s): Gregory L. Watson, Dayuan Xiong, Lu Zhang, Joseph A. Zoller, John Shamshoian, Phillip Sundin, Teresa Bufford, Anne W. Rimoin, Marc A. Suchard, Christina M. Ramirez
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0219652

Drone-based effective counting and ageing of hippopotamus (Hippopotamus amphibius) in the Okavango Delta in Botswana
Cited by: 16
Author(s): Victoria L. Inman, Richard T. Kingsford, Michael J. Chase, Keith E. A. Leggett
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0223271

Gender linked fate explains lower legal abortion support among white married women
Cited by: 3
Author(s): Leah Ruppanner, Gosia Mikołajczak, Kelsy Kretschmer, Christopher Stout
Software Mentions: 4
Published: almost 7 years ago

10.14814/phy2.14680

Effect of ankle joint position on triceps surae contractile properties and motor unit discharge rates
Cited by: 7
Author(s): Kalter Hali, Alexander M. Zero, Charles L. Rice
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0210663

Late effects of total body irradiation on hematopoietic recovery and immune function in rhesus macaques
Cited by: 18
Author(s): Laura P. Hale, Gowrisankar Rajam, George M. Carlone, Chen Jiang, Kouros Owzar, Greg Dugan, David L. Caudell, Nelson J. Chao, J. Mark Cline, Thomas C. Register, Gregory D. Sempowski
Software Mentions: 4
Published: over 7 years ago

10.3389/fneur.2020.00605

Subtle Cerebellar Features in Relatives of Essential Tremor Cases
Cited by: 1
Author(s): Evan A. Hale, Ruby Hickman, Hollie Dowd, Deepti Varathan, Gina Liu, Elan D. Louis
Software Mentions: 4
Published: about 6 years ago

10.3389/fphar.2021.625678

Modeling of SARS-CoV-2 Treatment Effects for Informed Drug Repurposing
Cited by: 11
Author(s): Charlotte Kern, Verena Schöning, Carlos Chaccour, Felix Hammann
Software Mentions: 4
Published: over 5 years ago

10.3389/fphar.2018.00508

A Computational Workflow for Probabilistic Quantitative in Vitro to in Vivo Extrapolation
Cited by: 18
Author(s): Kevin McNally, Alex Hogg, George Loizou
Software Mentions: 4
Published: about 8 years ago

10.1093/database/baz053

CropCircDB: a comprehensive circular RNA resource for crops in response to abiotic stress
Cited by: 26
Author(s): Kai Wang, Chong Wang, Baohuan Guo, Kun Song, Chuanhong Shi, Xin Jiang, Keyi Wang, Yacong Tan, Lequn Wang, Lin Wang, Jiangjiao Li, Ying Liu, Yu-Dong Cai, Hongwei Zhao, Xiaoyong Sun
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0033575

Genetic Dissection of Acute Ethanol Responsive Gene Networks in Prefrontal Cortex: Functional and Mechanistic Implications
Cited by: 78
Author(s): Aaron R. Wolen, Charles Phillips, Michael A. Langston, Alex H. Putman, Paul J. Vorster, Nathan A. Bruce, Timothy P. York, Robert W. Williams, Michael F. Miles
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0108424

CRISPRseek: A Bioconductor Package to Identify Target-Specific Guide RNAs for CRISPR-Cas9 Genome-Editing Systems
Cited by: 156
Author(s): Lihua Julie Zhu, Benjamin Holmes, Neil Aronin, Michael Brodsky
Software Mentions: 4
Published: almost 12 years ago

10.1038/s41598-020-69218-1

Validity of dynamical analysis to characterize heart rate and oxygen consumption during effort tests
Cited by: 5
Author(s): Denis Mongin, C. Chabert, Adriana Uribe Caparros, Aurélie Collado, Éric Hermand, Olivier Hue, José Ramón Alvero Cruz, Delphine S. Courvoisier
Software Mentions: 4
Published: about 6 years ago

10.1186/s40462-019-0188-y

Time and energy costs of different foraging choices in an avian generalist species
Cited by: 13
Author(s): Alejandro Sotillo, Jeroen Baert, Wendt Müller, Eric Stienen, Amadeu M.V.M. Soares, Luc Lens
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9010005

Effects of Thermal Stress on the Gut Microbiome of Juvenile Milkfish (Chanos chanos)
Cited by: 24
Author(s): Christiane Hassenrück, Hannes Reinwald, Andreas Kunzmann, Inken Tiedemann, Astrid Gärdes
Software Mentions: 4
Published: over 5 years ago

10.3758/s13421-021-01164-3

Does morphological structure modulate access to embedded word meaning in child readers?
Cited by: 3
Author(s): Jana Hasenäcker, Olga Solaja, Davide Crepaldi
Software Mentions: 4
Published: over 5 years ago

10.1093/gastro/goaa069

Nomogram to predict primary non-response to infliximab in patients with Crohn’s disease: a multicenter study
Cited by: 3
Author(s): Xiao-Qi Ye, Jing Cai, Qiao Yu, Xiaocang Cao, Yan Chen, M. K. Rao, Baili Chen, Yao He, Zhirong Zeng, Hao Chen, Yimou Lin, Qian Cao, Minhu Chen, Shenghong Zhang
Software Mentions: 4
Published: over 5 years ago

10.1001/jamanetworkopen.2020.37748

Use of Mechanical Circulatory Support Devices Among Patients With Acute Myocardial Infarction Complicated by Cardiogenic Shock
Cited by: 45
Author(s): Sanket S. Dhruva, Joseph S. Ross, Bobak J. Mortazavi, Nathan C. Hurley, Harlan M. Krumholz, Jeptha P. Curtis, Alyssa Berkowitz, Frederick A. Masoudi, John C. Messenger, Craig S. Parzynski, Che Ngufor, Saket Girotra, Amit P. Amin, Nilay D. Shah, Nihar R. Desai
Software Mentions: 4
Published: over 5 years ago

10.1007/s10548-020-00772-7

Accounting for Heterogeneity: Mixed-Effects Models in Resting-State EEG Data in a Sample of Tinnitus Sufferers
Cited by: 11
Author(s): Constanze Riha, Dominik Güntensperger, Tobias Kleinjung, Martin Meyer
Software Mentions: 4
Published: over 6 years ago

10.1186/s12862-020-01636-1

Investigating cellular and molecular mechanisms of neurogenesis in Capitella teleta sheds light on the ancestor of Annelida
Cited by: 10
Author(s): Abhinav Sur, Ashley Renfro, Philip J. Bergmann, Néva P. Meyer
Software Mentions: 4
Published: about 6 years ago

10.3390/ani11071950

Investigating the Effects of a Phytobiotics-Based Product on the Fecal Bacterial Microbiome of Weaned Pigs
Cited by: 8
Author(s): Anlly Fresno Rueda, Ryan S Samuel, Benoit St‐Pierre
Software Mentions: 4
Published: about 5 years ago

10.1186/s13075-020-02343-4

Single-cell transcriptome conservation in a comparative analysis of fresh and cryopreserved human skin tissue: pilot in localized scleroderma
Cited by: 17
Author(s): Emily Mirizio, Tracy Tabib, Xinjun Wang, Wei Chen, Christopher Liu, Robert Lafyatis, Heidi Jacobe, Kathryn S. Torok
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0098552

Identification of Glyceraldehyde 3-Phosphate Dehydrogenase Sequence and Expression Profiles in Tree Shrew (Tupaia belangeri)
Cited by: 5
Author(s): Yu Zheng, Qihui Wang, Chenxia Yun, Yingjun Wang, Wanli W. Smith, Jing Leng
Software Mentions: 4
Published: about 12 years ago

10.3390/microorganisms9051038

Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert
Cited by: 15
Author(s): Dirk Schulze‐Makuch, Daniel Lipus, Felix L. Arens, Mickaël Baqué, Till L. V. Bornemann, Jean Pierre Paul de Vera, Markus Flury, Jan Frösler, Jacob Heinz, Yunha Hwang, Samuel P. Kounaves, Kai Mangelsdorf, Rainer U. Meckenstock, Mark Pannekens, Alexander J. Probst, Johan S. Sáenz, Janosch Schirmack, Michael Schloter, Philippe Schmitt‐Kopplin, Bernd Uwe Schneider, Jenny Uhl, Gisle Vestergaard, Bernardita Valenzuela, Pedro Zamorano, Dirk Wagner
Software Mentions: 4
Published: about 5 years ago

10.1007/s00248-020-01576-9

Biodiversity Loss Threatens the Current Functional Similarity of Beta Diversity in Benthic Diatom Communities
Cited by: 8
Author(s): Leena Virta, Janne Soininen, Alf Norkko
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpsyg.2015.01782

Thinking Outside the Box: Developing Dynamic Data Visualizations for Psychology with Shiny
Cited by: 31
Author(s): David Ellis, Hannah Lena Merdian
Software Mentions: 4
Published: over 10 years ago

10.3389/fcimb.2021.678482

Deleterious Effects of SARS-CoV-2 Infection on Human Pancreatic Cells
Cited by: 38
Author(s): Syairah Hanan Shaharuddin, Victoria Wang, Reginaldo da Silva Santos, Andrew Gross, Yizhou Wang, Harneet Jawanda, Yi Zhang, Wohaib Hasan, Gustavo García, Vaithilingaraja Arumugaswami, Dhruv Sareen
Software Mentions: 4
Published: about 5 years ago

10.3389/fcvm.2018.00186

Spatial Principles of Chromatin Architecture Associated With Organ-Specific Gene Regulation
Cited by: 15
Author(s): Douglas J. Chapski, Manuel Rosa‐Garrido, Haiyang Nan, Frank Alber, Thomas M. Vondriska
Software Mentions: 4
Published: over 7 years ago

10.1186/s13072-015-0040-6

RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships
Cited by: 127
Author(s): Julie Nadel, Rodoniki Athanasiadou, Christophe Lemetre, N. Ari Wijetunga, Pilib Ó Broin, Hanae Sato, Zhengdong Zhang, Jeffrey A. Jeddeloh, Cristina Montagna, Aaron Golden, Cathal Seoighe, John M. Greally
Software Mentions: 4
Published: over 10 years ago

10.1038/s42003-021-02059-4

Three-dimensional tissue-engineered human skeletal muscle model of Pompe disease
Cited by: 13
Author(s): Jason Wang, Chris J. Zhou, Alastair Khodabukus, Sabrina Tran, Sang-oh Han, Aaron L. Carlson, Lauran Madden, Priya S. Kishnani, Dwight D. Koeberl
Software Mentions: 4
Published: about 5 years ago

10.1016/j.stem.2019.05.013

Engineering Genetic Predisposition in Human Neuroepithelial Stem Cells Recapitulates Medulloblastoma Tumorigenesis
Cited by: 53
Author(s): Miller Huang, Jignesh Tailor, Qiqi Zhen, Aaron H. Gillmor, Matthew Miller, Holger Weishaupt, Justin Chen, Tina Zheng, Emily K. Nash, Lauren McHenry, Zhenyi An, Fubaiyang Ye, Yasuhiro Takashima, James Clarke, Harold Ayetey, Florence M.G. Cavalli, Betty Luu, Branden S. Moriarity, Shirin Ilkhanizadeh, Lukas Chávez, Chunying Yu, Kathreena M. Kurian, Thierry Magnaldo, Nicolas Sévenet, Philipp Koch, Steven M. Pollard, Peter B. Dirks, M Snyder, David A. Largaespada, Yoon Jae Cho, Joanna J. Phillips, Fredrik J. Swartling, A. Sorana Morrissy, Marcel Kool, Stefan M. Pfister, Michael D. Taylor, Austin Smith, William A. Weiss
Software Mentions: 4
Published: almost 7 years ago

10.3390/cancers13051126

Transformed Canine and Murine Mesenchymal Stem Cells as a Model for Sarcoma with Complex Genomics
Cited by: 5
Author(s): Natasja Franceschini, Bas Verbruggen, Marianna A. Tryfonidou, Alwine B. Kruisselbrink, Hans J. Baelde, Karin E. de Visser, Károly Szuhai, Anne‐Marie Cleton‐Jansen, Judith V.M.G. Bovée
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0150402

Trade-Offs between Growth Rate, Tree Size and Lifespan of Mountain Pine (Pinus montana) in the Swiss National Park
Cited by: 51
Author(s): Christof Bigler
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2164-12-402

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
Cited by: 2,222
Author(s): Nabil-Fareed Alikhan, Nicola K. Petty, Nouri L. Ben Zakour, Scott A. Beatson
Software Mentions: 4
Published: almost 15 years ago

10.1186/1471-2164-9-S2-S17

Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain
Cited by: 15
Author(s): Heng Huang, Nha Nguyen, S. Oraintara, An Vo
Software Mentions: 4
Published: over 18 years ago

10.3389/fpsyg.2020.00010

Comparison of Trust Assessment Scales Based on Item Response Theory
Cited by: 7
Author(s): Buyun Dai, Wenqing Zhang, Yang Wang, Jian Xiao-Zhu
Software Mentions: 4
Published: over 6 years ago

10.1016/j.pain.2013.05.021

HDAC inhibitors attenuate the development of hypersensitivity in models of neuropathic pain
Cited by: 127
Author(s): Franziska Denk, Wenlong Huang, Ben S. Sidders, Angela Bithell, Megan Crow, John Grist, Simone Sharma, Daniel Ziemek, Andrew S.C. Rice, Noel J. Buckley, Stephen B. McMahon
Software Mentions: 4
Published: almost 13 years ago

10.1016/j.mex.2019.01.009

RppH can faithfully replace TAP to allow cloning of 5′-triphosphate carrying small RNAs
Cited by: 18
Author(s): Miguel Vasconcelos Almeida, António Miguel de Jesus Domingues, Hanna Lukas, María Méndez-Lago, René F. Ketting
Software Mentions: 4
Published: over 7 years ago

10.1186/s12862-016-0592-5

Age-related association of venom gene expression and diet of predatory gastropods
Cited by: 16
Author(s): Dan Chang, Thomas F. Duda
Software Mentions: 4
Published: over 10 years ago

10.1186/s12864-021-07889-4

Experimental Babesia rossi infection induces hemolytic, metabolic, and viral response pathways in the canine host
Cited by: 6
Author(s): Rachel Smith, Amelia Goddard, Arun K. Boddapati, Steven Brooks, Johan P. Schoeman, Justin Lack, Andrew L. Leisewitz, Hans Ackerman
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1004604

Foxf Genes Integrate Tbx5 and Hedgehog Pathways in the Second Heart Field for Cardiac Septation
Cited by: 77
Author(s): Andrew D. Hoffmann, Xinan Yang, Ozanna Burnicka-Turek, Joshua D. Bosman, Xiaomeng Ren, Jeffrey D. Steimle, Steven A. Vokes, Andrew P. McMahon, Vladimir V. Kalinichenko, Ivan P. Moskowitz
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-018-38049-6

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota
Cited by: 30
Author(s): Jennifer Rosenbaum, Mykhaylo Usyk, Zigui Chen, Christine P. Zolnik, Heidi E. Jones, Levi Waldron, Jennifer Beam Dowd, Lorna E. Thorpe, Robert D. Burk
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2164-11-294

Consistent annotation of gene expression arrays
Cited by: 28
Author(s): Benoît Ballester, Nathan Johnson, G Proctor, Paul Flicek
Software Mentions: 4
Published: about 16 years ago

10.1186/s12864-021-07531-3

A tail of two pandas— whole genome k-mer signature analysis of the red panda (Ailurus fulgens) and the Giant panda (Ailuropoda melanoleuca)
Cited by: 0
Author(s): Mátyás Cserháti
Software Mentions: 4
Published: over 5 years ago

10.1186/s12885-018-4757-z

Association of tamoxifen resistance and lipid reprogramming in breast cancer
Cited by: 98
Author(s): Susanne Hultsch, Matti Kankainen, Lassi Paavolainen, Ruusu-Maaria Kovanen, Elina Ikonen, Sara Kangaspeska, Vilja Pietiäinen, Olli Kallioniemi
Software Mentions: 4
Published: almost 8 years ago

10.1128/mBio.01157-20

Previremic Identification of Ebola or Marburg Virus Infection Using Integrated Host-Transcriptome and Viral Genome Detection
Cited by: 2
Author(s): Emily Speranza, Ignacio Caballero, Anna N. Honko, Joshua C. Johnson, J. Kyle Bohannon, Lisa Evans DeWald, Dawn M. Gerhardt, Jennifer Sword, Lisa E. Hensley, Richard S. Bennett, John H. Connor
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-021-07643-w

Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria
Cited by: 7
Author(s): Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, S.C. Ring, D.P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.735103

Editorial: Computational Tools in Inferring Cancer Tissue-of-Origin and Molecular Classification Towards Personalized Cancer Therapy, Volume II
Cited by: 0
Author(s): Ling Kui, Wenzhe Mao, Aasim Majeed, Jian Chen
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0044185

Sequencing and Characterization of Striped Venus Transcriptome Expand Resources for Clam Fishery Genetics
Cited by: 23
Author(s): Alessandro Coppe, Stefania Bortoluzzi, Giulia Murari, Ilaria A. M. Marino, Lorenzo Zane, Chiara Papetti
Software Mentions: 4
Published: almost 14 years ago

10.3389/fmicb.2019.01562

Response of Fungal Communities and Co-occurrence Network Patterns to Compost Amendment in Black Soil of Northeast China
Cited by: 38
Author(s): Wei Yang, Xuyuan Jing, Yupeng Guan, Cheng Zhai, Tao Wang, Dengyu Shi, Wanqing Sun, Song Gu
Software Mentions: 4
Published: about 7 years ago

10.1111/eva.13049

Using genetic relatedness to understand heterogeneous distributions of urban rat‐associated pathogens
Cited by: 9
Author(s): Kaylee A. Byers, Tom R Booker, Matthew Combs, Chelsea G. Himsworth, Jason Munshi‐South, David M. Patrick, Michael C. Whitlock
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-37269-0

Efficient curation of genebanks using next generation sequencing reveals substantial duplication of germplasm accessions
Cited by: 67
Author(s): Narinder Singh, Shuangye Wu, W. J. Raupp, Sunish K. Sehgal, Sanu Arora, Vijay K. Tiwari, Prashant Vikram, Sukhwinder Singh, Parveen Chhuneja, Bikram S. Gill, Jesse Poland
Software Mentions: 4
Published: over 7 years ago

10.1038/s41597-020-00713-w

Genome-wide identification of accessible chromatin regions in bumblebee by ATAC-seq
Cited by: 2
Author(s): Xiaomeng Zhao, Long Su, Weilin Xu, Sarah Schaack, Cheng Sun
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0247900

Ecological impacts of the LED-streetlight retrofit on insectivorous bats in Singapore
Cited by: 3
Author(s): Kenneth Ee Meng Lee, Deon Lum, Joanna L. Coleman
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.618478

ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq
Cited by: 7
Author(s): Rita Jui-Hsien Lu, Yen-Ting Liu, Chih-Wei Huang, Ming‐Ren Yen, Chung‐Yen Lin, Pao‐Yang Chen
Software Mentions: 4
Published: over 5 years ago

10.3390/metabo11080533

Kidney Allograft Function Is a Confounder of Urine Metabolite Profiles in Kidney Allograft Recipients
Cited by: 4
Author(s): Karsten Suhre, Darshana Dadhania, John Richard Lee, Thangamani Muthukumar, Justin Chen, Steven S. Gross, Manikkam Suthanthiran
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.7143

False head complexity and evidence of predator attacks in male and female hairstreak butterflies (Lepidoptera: Theclinae: Eumaeini) from Mexico
Cited by: 6
Author(s): Eric Novelo Galicia, Moisés Armando Luis Martínez, Carlos Cordero
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pntd.0009143

The intersection of land use and human behavior as risk factors for zoonotic pathogen exposure in Laikipia County, Kenya
Cited by: 4
Author(s): Joseph Kamau, Elizabeth Ashby, Lindsey M. Shields, Jennifer H. Yu, Suzan Murray, Megan E. Vodzak, Allan ole Kwallah, Peris Ambala, Dawn Zimmerman
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-34009-2

Increase in prefrontal cortex oxygenation during static muscular endurance performance is modulated by self-regulation strategies
Cited by: 41
Author(s): Wanja Wolff, Maik Bieleke, Anna Hirsch, Christian Wienbruch, Peter M. Gollwitzer, Julia Schüler
Software Mentions: 4
Published: almost 8 years ago

10.1016/j.infsof.2013.05.001

Enforcement of entailment constraints in distributed service-based business processes
Cited by: 13
Author(s): Waldemar Hummer, Patrick Gaubatz, Mark Strembeck, Uwe Zdun, Schahram Dustdar
Software Mentions: 4
Published: over 12 years ago

10.1186/s13068-018-1164-2

Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies
Cited by: 40
Author(s): Anna Alessi, Susannah Bird, Nicola C. Oates, Yang Li, Adam Dowle, E. H. Novotny, Eduardo R. deAzevedo, Joseph P. Bennett, Igor Polikarpov, J. Peter W. Young, Simon J. McQueen‐Mason, Neil C. Bruce
Software Mentions: 4
Published: about 8 years ago

10.3390/plants10020225

Incorporating Drought and Submergence Tolerance QTL in Rice (Oryza sativa L.)—The Effects under Reproductive Stage Drought and Vegetative Stage Submergence Stresses
Cited by: 11
Author(s): Asmuni Mohd Ikmal, Abd Aziz Shamsudin Noraziyah, R. Wickneswari
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00431

MetaPhat: Detecting and Decomposing Multivariate Associations From Univariate Genome-Wide Association Statistics
Cited by: 10
Author(s): Jake Lin, Rubina Tabassum, Samuli Ripatti, Matti Pirinen
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0057886

Integrative Genome-Wide Gene Expression Profiling of Clear Cell Renal Cell Carcinoma in Czech Republic and in the United States
Cited by: 94
Author(s): Magdalena B. Wozniak, Florence Le Calvez-Kelm, Behnoush Abedi-Ardekani, Graham Byrnes, G. Durand, Christine Carreira, Jocelyne Michelon, Vladimí­r Janout, Ivana Holcátová, Lenka Foretová, A. Brisuda, Fabienne Lesueur, James McKay, Paul Brennan, Ghislaine Scélo
Software Mentions: 4
Published: over 13 years ago

10.1186/1471-2164-15-763

Transcriptome of Saccharomyces cerevisiae during production of D-xylonate
Cited by: 5
Author(s): Dominik Mojžita, Merja Oja, Eija Rintala, Marilyn G. Wiebe, Merja Penttilä, Laura Ruohonen
Software Mentions: 4
Published: over 12 years ago

10.3390/s21175804

Non-Destructive Identification of Naturally Aged Alfalfa Seeds via Multispectral Imaging Analysis
Cited by: 8
Author(s): Xuemeng Wang, Han Zhang, Rui Song, Xin He, Peisheng Mao, Shangang Jia
Software Mentions: 4
Published: almost 5 years ago

10.3390/s19194342

Prediction of Motor Failure Time Using An Artificial Neural Network
Cited by: 39
Author(s): Gustavo Scalabrini Sampaio, Arnaldo Rabello de Aguiar Vallim Filho, Leilton Santos da Silva, Leandro Augusto da Silva
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-60595-1

Prediction of Alzheimer’s disease using blood gene expression data
Cited by: 55
Author(s): Taesic Lee, Hyunju Lee
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-34964-w

Inducing controlled cell cycle arrest and re-entry during asexual proliferation of Plasmodium falciparum malaria parasites
Cited by: 29
Author(s): Riëtte van Biljon, Jandeli Niemand, Roelof van Wyk, Katherine Clark, Bianca K. Verlinden, Clarissa Abrie, Hilde von Grüning, Werner Smidt, Annél Smit, Janette Reader, Heather J. Painter, Manuel Llinás, Christian Doerig, Lyn‐Marié Birkholtz
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-70934-x

Urban food subsidies reduce natural food limitations and reproductive costs for a wetland bird
Cited by: 20
Author(s): Betsy A. Evans, Dale E. Gawlik
Software Mentions: 4
Published: almost 6 years ago

10.3390/insects10050134

Abundance and Population Decline Factors of Chrysopid Juveniles in Olive Groves and Adjacent Trees
Cited by: 7
Author(s): R. Herrera, Mercedes Campos, Marina González-Salvadó, Francisca Ruano
Software Mentions: 4
Published: about 7 years ago

10.1186/s41927-019-0078-3

Abstracts of scientific contributions to GCOM 2019
Cited by: 0
Author(s):
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0164091

Depression among Parents Two to Six Years Following the Loss of a Child by Suicide: A Novel Prediction Model
Cited by: 3
Author(s): Tommy Nyberg, Ida Hed Myrberg, Pernilla Omérov, Gunnar Steineck, Ullakarin Nyberg
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0051013

A Measure of the Signal-to-Noise Ratio of Microarray Samples and Studies Using Gene Correlations
Cited by: 15
Author(s): David Venet, Vincent Detours, Hugues Bersini
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0069401

TCW: Transcriptome Computational Workbench
Cited by: 16
Author(s): Carol Soderlund, William M. Nelson, Mark R. Willer, David R. Gang
Software Mentions: 4
Published: about 13 years ago

10.3390/ijerph17114047

Short-Term Effects of Ambient Ozone, PM2.5, and Meteorological Factors on COVID-19 Confirmed Cases and Deaths in Queens, New York
Cited by: 146
Author(s): Atin Adhikari, Jingjing Yin
Software Mentions: 4
Published: about 6 years ago

10.18632/oncotarget.23280

Validation of a hypoxia related gene signature in multiple soft tissue sarcoma cohorts
Cited by: 32
Author(s): Lingjian Yang, Laura Forker, Joely J. Irlam, Nischalan Pillay, Ananya Choudhury, Catharine M L West
Software Mentions: 4
Published: over 8 years ago

10.1155/2014/969150

A Survey on Personal Data Cloud
Cited by: 13
Author(s): Jiaqiu Wang, Zhongjie Wang
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0023628

Rhythmic Diel Pattern of Gene Expression in Juvenile Maize Leaf
Cited by: 12
Author(s): Maciej Jończyk, Alicja Sobkowiak, Paweł Siedlecki, Przemysław Biecek, Joanna Trzcińska-Danielewicz, Jerzy Tiuryn, Jan Fronk, Paweł Sowiński
Software Mentions: 4
Published: almost 15 years ago

10.1371/journal.pone.0229687

Expanding radiogenic strontium isotope baseline data for central Mexican paleomobility studies
Cited by: 16
Author(s): Sofía I. Pacheco‐Forés, Gwyneth W. Gordon, Kelly J. Knudson
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0212473

Nasal microbial composition and chronic otitis media with effusion: A case-control study
Cited by: 18
Author(s): Rebecca E. Walker, Caroline Walker, Carlos A. Camargo, Jim Bartley, David Flint, John M. D. Thompson, Edwin A. Mitchell
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-30099-0

Spinal arthritis in cane toads across the Australian landscape
Cited by: 3
Author(s): Deborah S. Bower, Kiyomi Yasumiba, Daryl R. Trumbo, Ross A. Alford, Lin Schwarzkopf
Software Mentions: 4
Published: almost 8 years ago

10.1093/emph/eou018

Phylogenetic tree shapes resolve disease transmission patterns
Cited by: 75
Author(s): Caroline Colijn, Jennifer L. Gardy
Software Mentions: 4
Published: over 12 years ago

10.3390/ijms19113687

Hierarchical Clustering of DNA k-mer Counts in RNAseq Fastq Files Identifies Sample Heterogeneities
Cited by: 5
Author(s): Wolfgang Kaisers, Holger Schwender, Heiner Schaal
Software Mentions: 4
Published: over 7 years ago

10.3390/metabo9060117

Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
Cited by: 42
Author(s): Su H. Chu, Mengna Huang, Rachel S. Kelly, Elisa Benedetti, Jalal K. Siddiqui, Oana A. Zeleznik, Alexandre Pereira, David M. Herrington, Craig E. Wheelock, Jan Krumsiek, Michael J. McGeachie, Steven C. Moore, Peter Kraft, Ewy A. Mathé, Jessica Lasky‐Su
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.1937

Mismatch between fishway operation and timing of fish movements: a risk for cascading effects in partial migration systems
Cited by: 25
Author(s): Casper H. A. van Leeuwen, Jon Museth, Odd Terje Sandlund, Tore Qvenild, Leif Asbjørn Vøllestad
Software Mentions: 4
Published: over 10 years ago

10.2174/138920209787581244

Using Free and Open-Source Bioconductor Packages to Analyze Array Comparative Genomics Hybridization (aCGH) Data
Cited by: 2
Author(s): Simon Lin, Pan Du, Nadereh Jafari, Toru Ouchi
Software Mentions: 4
Published: over 17 years ago

10.1371/journal.pone.0165267

Plasma Metabolites Predict Severity of Depression and Suicidal Ideation in Psychiatric Patients-A Multicenter Pilot Analysis
Cited by: 87
Author(s): Daiki Setoyama, Takahiro A. Kato, Ryota Hashimoto, Hiroshi Kunugi, Kotaro Hattori, Kohei Hayakawa, Mina Sato-Kasai, Norihiro Shimokawa, Sachie Kaneko, Sumiko Yoshida, Yu Ichi Goto, Yuka Yasuda, Hidenaga Yamamori, Masahiro Ohgidani, Noriyuki Sagata, Daisuke Miura, Dongchon Kang, Shigenobu Kanba
Software Mentions: 4
Published: over 9 years ago

10.1186/1471-2164-13-42

An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies
Cited by: 17
Author(s): Michiel E. Adriaens, Magali Jaillard, Lars Eijssen, Claus Mayer, Chris T. Evelo
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0199314

Novel classification for global gene signature model for predicting severity of systemic sclerosis
Cited by: 1
Author(s): Zariel I. Johnson, Jennifer A. Jones, Avinaba Mukherjee, Dianxu Ren, Carol Feghali‐Bostwick, Yvette P. Conley, Cecelia C. Yates
Software Mentions: 4
Published: about 8 years ago

10.7150/thno.46142

A panel of eight microRNAs is a good predictive parameter for triple-negative breast cancer relapse
Cited by: 42
Author(s): Hsiao-Chin Hong, Ching-Te Chuang, Wei‐Chih Huang, Shun-Long Weng, Chia-Hung Chen, Kuang-Hsin Chang, Kuang‐Wen Liao, Hsien-Da Huang
Software Mentions: 4
Published: over 6 years ago