10.1093/bib/bbv019
Optimization of miRNA-seq data preprocessingCited by: 100
Author(s): Susan H. Tam, Ming‐Sound Tsao, John Douglas Mcpherson
Software Mentions: 4
Published: over 11 years ago
10.1186/s13058-020-01318-2
MDM2 inhibition in combination with endocrine therapy and CDK4/6 inhibition for the treatment of ER-positive breast cancerCited by: 35
Author(s): Neil Portman, Heloisa Helena Milioli, Sarah Alexandrou, Rhiannon Coulson, Aliza Yong, Kristine J. Fernandez, Karin K.M. Chia, Ensar Halilovic, Davendra Segara, Andrew Parker, Sue Haupt, Ygal Haupt, Wayne D. Tilley, Alexander Swarbrick, C. Elizabeth Caldon, Elgene Lim
Software Mentions: 4
Published: almost 6 years ago
10.3389/fmicb.2020.580397
Stable Isotope Probing Identifies Bacterioplankton Lineages Capable of Utilizing Dissolved Organic Matter Across a Range of BioavailabilityCited by: 10
Author(s): Shuting Liu, Nicholas Baetge, Jacqueline Comstock, Keri Opalk, Rachel Parsons, Elisa R. Halewood, Chance English, Stephen J. Giovannoni, Luis M. Bolaños, Craig E. Nelson, Kevin L. Vergin, Craig A. Carlson
Software Mentions: 4
Published: almost 6 years ago
10.3389/fmicb.2015.01511
High Diversity of Anaerobic Alkane-Degrading Microbial Communities in Marine Seep Sediments Based on (1-methylalkyl)succinate Synthase GenesCited by: 43
Author(s): Marion Stagars, S. Emil Ruff, Rudolf Amann, Katrin Knittel
Software Mentions: 4
Published: over 10 years ago
10.1038/tp.2016.67
Candidate gene networks and blood biomarkers of methamphetamine-associated psychosis: an integrative RNA-sequencing reportCited by: 26
Author(s): Michael S. Breen, Anne Uhlmann, Christiane M. Nday, Stephen J. Glatt, Mario Mitt, A. Metsalpu, Dan J. Stein, Nicola Illing
Software Mentions: 4
Published: about 10 years ago
10.1186/s13068-018-1060-9
Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analysesCited by: 33
Author(s): Xing Qin, Xiaoyun Su, Huiying Luo, Rui Ma, Bin Yao, Fuying Ma
Software Mentions: 4
Published: over 8 years ago
10.1093/biostatistics/kxu038
Joint analysis of differential gene expression in multiple studies using correlation motifsCited by: 29
Author(s): Yingying Wei, Toyoaki Tenzen, Hongkai Ji
Software Mentions: 4
Published: almost 12 years ago
10.3389/fmicb.2017.01756
Bacterial, Archaeal, and Eukaryotic Diversity across Distinct Microhabitats in an Acid Mine DrainageCited by: 78
Author(s): Victoria Mesa, José Luis Gallego, Ricardo González-Gil, Béatrice Lauga, Jesús Sánchez, Celia Méndez–García
Software Mentions: 4
Published: almost 9 years ago
10.1038/s41598-018-23746-z
Local oceanographic variability influences the performance of juvenile abalone under climate changeCited by: 26
Author(s): Charles A. Boch, Fiorenza Micheli, Maha W. Alnajjar, Stephen G. Monismith, Jody M. Beers, Juan Carlos Bonilla, Antonio Espinoza, Leonardo Vázquez‐Vera, C. Brock Woodson
Software Mentions: 4
Published: over 8 years ago
10.1186/s12870-021-02997-5
Low nitrogen availability inhibits the phosphorus starvation response in maize (Zea mays ssp. mays L.)Cited by: 10
Author(s): J. Vladimir Torres-Rodríguez, M. Nancy Salazar-Vidal, Ricardo A. Chávez Montes, Julio A. Massange‐Sánchez, C. Stewart Gillmor, Ruairidh J. H. Sawers
Software Mentions: 4
Published: about 5 years ago
10.3389/fgene.2021.636419
Five Circular RNAs in Metabolism Pathways Related to Prostate CancerCited by: 6
Author(s): Lili Zhang, Wei Zhang, Hexin Li, Xiaokun Tang, Siyuan Xu, Meng Wu, Li Wan, Fei Su, Yaqun Zhang
Software Mentions: 4
Published: over 5 years ago
10.3389/fcimb.2020.561761
LL-37-Induced Autophagy Contributed to the Elimination of Live Porphyromonas gingivalis Internalized in KeratinocytesCited by: 12
Author(s): Xue Yang, Li Na Niu, Yaping Pan, Xiaodong Feng, Jie Liu, Yan Guo, Chunyu Pan, Fei Geng, Xiaolin Tang
Software Mentions: 4
Published: almost 6 years ago
10.3389/fgene.2021.659788
RNA-Associated Co-expression Network Identifies Novel Biomarkers for Digestive System CancerCited by: 7
Author(s): Zheng Chen, Zijie Shen, Zilong Zhang, Zhao Da, Lei Xu, Lijun Zhang
Software Mentions: 4
Published: over 5 years ago
10.1186/s12866-020-01979-1
Habitat disturbance influences the skin microbiome of a rediscovered neotropical-montane frogCited by: 14
Author(s): Randall R. Jiménez, Gilbert Alvarado, José Luís Sandoval, Simone Sommer
Software Mentions: 4
Published: almost 6 years ago
10.1186/1755-8794-7-32
Conserved recurrent gene mutations correlate with pathway deregulation and clinical outcomes of lung adenocarcinoma in never-smokersCited by: 45
Author(s): Zhifu Sun, Liang Wang, Bruce W. Eckloff, Bo Deng, Yi Wang, Jason A. Wampfler, Jiseon Jang, Eric D. Wieben, Jin Jen, Ming You, Ping Yang
Software Mentions: 4
Published: about 12 years ago
10.3389/fgene.2019.00555
Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis MediaCited by: 14
Author(s): Silvio D. Brugger, Julia G. Kraemer, Weihong Qi, Lindsey Bomar, Anne Oppliger, Markus Hilty
Software Mentions: 4
Published: about 7 years ago
10.1186/s12916-021-01925-6
Glycolysis-associated lncRNAs identify a subgroup of cancer patients with poor prognoses and a high-infiltration immune microenvironmentCited by: 17
Author(s): Kuo Hao Ho, Tzu Wen Huang, Chwen Ming Shih, Yi Ting Lee, Ann Jeng Liu, Peng Hsu Chen, Ku Chung Chen
Software Mentions: 4
Published: over 5 years ago
10.1186/s12865-021-00428-6
Transcriptomics of type 2 diabetic and healthy human neutrophilsCited by: 8
Author(s): Sarah E. Kleinstein, Jamison McCorrison, A. Razzaque Ahmed, Hatice Hastürk, Thomas E. Van Dyke, Marcelo Freire
Software Mentions: 4
Published: about 5 years ago
10.3389/fgene.2020.557188
Bioinformatics Identification of the Expression and Clinical Significance of E2F Family in Endometrial CancerCited by: 8
Author(s): YunZheng Zhang, Zihao Wang, Jian Ma, Jianing Huo, Yibing Li, YuShan Wang, Hao Chen, LuHe Shan, Xiaoxin Ma
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-016-2618-1
Transcriptome analysis of highly purified mouse spermatogenic cell populations: gene expression signatures switch from meiotic-to postmeiotic-related processes at pachytene stageCited by: 107
Author(s): Irene da Cruz, Rosana Rodríguez-Casuriaga, Federico F. Santiñaque, Joaquina Farías, Gianni Curti, Carlos A. Capoano, Gustavo A. Folle, Ricardo Benavente, José Sotelo‐Silveira, Adriana Geisinger
Software Mentions: 4
Published: over 10 years ago
10.3389/fgene.2021.684281
A Robust Seven-Gene Signature Associated With Tumor Microenvironment to Predict Survival Outcomes of Patients With Stage III–IV Lung AdenocarcinomaCited by: 3
Author(s): Hao Zhao, Xuening Zhang, Liting Guo, Songhe Shi, Ciyong Lu
Software Mentions: 4
Published: almost 5 years ago
10.3389/fgene.2014.00293
A bioinformatics workflow for detecting signatures of selection in genomic dataCited by: 49
Author(s): Murray Cadzow, James Boocock, Hoang Nguyen, Phillip Wilcox, Tony R. Merriman, Michael A. Black
Software Mentions: 4
Published: almost 12 years ago
10.1186/s12864-017-3967-0
Regulation of gene expression in roots of the pH-sensitive Vaccinium corymbosum and the pH-tolerant Vaccinium arboreum in response to near neutral pH stress using RNA-SeqCited by: 15
Author(s): Miriam Payá‐Milans, Gerardo H. Nunez, James W. Olmstead, Timothy A. Rinehart, Margaret Staton
Software Mentions: 4
Published: almost 9 years ago
10.1186/s12859-019-2703-y
FitTetra 2.0 – improved genotype calling for tetraploids with multiple population and parental data supportCited by: 32
Author(s): Konrad Zych, Gerrit Gort, Chris Maliepaard, Ritsert C. Jansen, Roeland E. Voorrips
Software Mentions: 4
Published: over 7 years ago
10.3389/fgene.2019.00070
Global Genetics Research in Prostate Cancer: A Text Mining and Computational Network Theory ApproachCited by: 5
Author(s): Md. Facihul Azam, Aliyu Musa, Matthias Dehmer, Olli Yli‐Harja, Frank Emmert‐Streib
Software Mentions: 4
Published: over 7 years ago
10.3389/fgene.2019.00951
Perinatal Bisphenol A Exposure and Reprogramming of Imprinted Gene Expression in the Adult Mouse BrainCited by: 11
Author(s): Maureen A. Malloy, Joseph Kochmanski, Tamara R. Jones, Justin A. Colacino, Jaclyn M. Goodrich, Dana C. Dolinoy, Laurie K. Svoboda
Software Mentions: 4
Published: almost 7 years ago
10.3389/fgene.2019.00217
Genomic, Transcriptomic, and Epigenomic Features Differentiate Genes That Are Relevant for Muscular Polyunsaturated Fatty Acids in the Common CarpCited by: 18
Author(s): Hanyuan Zhang, Peng Xu, Yanliang Jiang, Zixia Zhao, Jianxin Feng, Ruyu Tai, Chuanju Dong, Jian Xu
Software Mentions: 4
Published: over 7 years ago
10.3389/fgene.2021.700489
Comparative Transcriptome Analysis of Milk Somatic Cells During Lactation Between Two Intensively Reared Dairy Sheep BreedsCited by: 4
Author(s): Sofia Michailidou, Athanasios Ι. Gelasakis, Georgios Banos, G. Arsenos, Anagnostis Argiriou
Software Mentions: 4
Published: about 5 years ago
10.1038/s41598-021-92912-7
MYD88, NFKB1, and IL6 transcripts overexpression are associated with poor outcomes and short survival in neonatal sepsisCited by: 12
Author(s): Nouran B. AbdAllah, Eman A. Toraih, Essam Al Ageeli, Hala F. Elhagrasy, Nawal S. Gouda, Manal S. Fawzy, Ghada M. Helal
Software Mentions: 4
Published: about 5 years ago
10.1186/s13072-018-0252-7
Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemiaCited by: 14
Author(s): Sara Wernig-Zorc, Mukesh Yadav, Pradeep Kumar Kopparapu, Mats Bemark, Hallgerður Lind Kristjánsdóttir, Per‐Ola Andersson, Chandrasekhar Kanduri, Meena Kanduri
Software Mentions: 4
Published: over 7 years ago
10.1007/s00248-021-01700-3
Soil microbial inoculation during flood events shapes headwater stream microbial communities and diversityCited by: 9
Author(s): Florian Caillon, Katharina Besemer, Peter Peduzzi, Jakob Schelker
Software Mentions: 4
Published: over 5 years ago
10.1186/s13072-021-00395-7
Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserinaCited by: 13
Author(s): Florian Carlier, M. Li, Laetitia Maroc, Robert Debuchy, Charbel Souaid, Daan Noordermeer, Pierre Grognet, Fabienne Malagnac
Software Mentions: 4
Published: about 5 years ago
10.1186/s12864-016-2397-8
Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii)Cited by: 38
Author(s): Ido Bar, Scott F. Cummins, Abigail Elizur
Software Mentions: 4
Published: over 10 years ago
10.1186/s12864-019-6384-8
Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approachCited by: 6
Author(s): Frédéric Jehl, Colette Désert, Christophe Klopp, M. Brenet, Andrea Rau, Sophie Leroux, Morgane Boutin, Laëtitia Lagoutte, Kévin Muret, Yuna Blum, Diane Esquerré, David Gourichon, Thierry Burlot, Anne Collin, Frédérique Pitel, Alexandre Bénani, Tatiana Zerjal, Sandrine Lagarrigue
Software Mentions: 4
Published: over 6 years ago
10.1007/s11356-019-06639-0
Determination of nest occupation and breeding effect of the white stork by human-mediated landscape in Western PolandCited by: 22
Author(s): Joanna T. Białas, Łukasz Dylewski, Marcin Tobółka
Software Mentions: 4
Published: over 6 years ago
10.1186/s12864-016-2694-2
RNA-Seq following PCR-based sorting reveals rare cell transcriptional signaturesCited by: 21
Author(s): Maurizio Pellegrino, Adam Sciambi, Jamie Yates, Joshua D. Mast, Charles Silver, Dennis J. Eastburn
Software Mentions: 4
Published: about 10 years ago
10.3389/fpls.2020.588846
Genome-Wide Identification of Populus Malectin/Malectin-Like Domain-Containing Proteins and Expression Analyses Reveal Novel Candidates for Signaling and Regulation of Wood DevelopmentCited by: 8
Author(s): Vikash Kumar, Evgeniy N. Donev, Félix Barbut, Sunita Kushwah, Chanaka Mannapperuma, János Urbancsok, Ewa J. Mellerowicz
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-020-07327-x
Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early developmentCited by: 5
Author(s): Juliet M. Wong, Gretchen E. Hofmann
Software Mentions: 4
Published: over 5 years ago
10.1186/s12940-020-00608-8
Persistent organic pollutants, pre-pregnancy use of combined oral contraceptives, age, and time-to-pregnancy in the SELMA cohortCited by: 13
Author(s): Richelle D. Björvang, Chris Gennings, Ping Lin, Ghada Hussein, Hannu Kiviranta, Panu Rantakokko, Päivi Ruokojärvi, Christian Lindh, Pauliina Damdimopoulou, Carl‐Gustaf Bornehag
Software Mentions: 4
Published: about 6 years ago
10.1002/edm2.140
Prevalence of admission plasma glucose in 'diabetes' or 'at risk' ranges in hospital emergencies with no prior diagnosis of diabetes by gender, age and ethnicityCited by: 5
Author(s): Sandip Ghosh, Susan E. Manley, Peter Nightingale, John A. Williams, Radhika Susarla, Irene Alonso‐Perez, I M Stratton, Georgios V. Gkoutos, Jonathan Webber, Stephen Denis Luzio, Wasim Hanif, Graham Roberts
Software Mentions: 4
Published: about 6 years ago
10.1186/s12864-017-4359-1
A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cellsCited by: 19
Author(s): Jialiang Yang, Jacob Hagen, Kalyani V. P. Guntur, Kimaada Allette, Sarah Schuyler, Jyoti Ranjan, Francesca Petralia, Stéphane Gesta, Robert Sebra, Milind Mahajan, Bin Zhang, Jun Zhu, Sander M. Houten, Andrew Kasarskis, Vivek K. Vishnudas, Viatcheslav R. Akmaev, Rangaprasad Sarangarajan, Niven R. Narain, Eric E. Schadt, Carmen Argmann, Zhidong Tu
Software Mentions: 4
Published: over 8 years ago
10.1186/s12864-017-3797-0
Differentially expressed genes from RNA-Seq and functional enrichment results are affected by the choice of single-end versus paired-end reads and stranded versus non-stranded protocolsCited by: 20
Author(s): Susan M. Corley, Karen L. MacKenzie, Annemiek Beverdam, Louise F. Roddam, Marc R. Wilkins
Software Mentions: 4
Published: about 9 years ago
10.1038/s41426-018-0195-x
Experimental transmission of Zika virus by <i>Aedes japonicus japonicus</i> from southwestern GermanyCited by: 32
Author(s): Stéphanie Jansen, Anna Heitmann, Renke Lühken, Hanna Jöst, Michelle Helms, Olli Vapalahti, Jonas Schmidt‐Chanasit, Egbert Tannich
Software Mentions: 4
Published: over 7 years ago
10.1186/s12863-019-0790-4
Transcriptome, physiological and biochemical analysis of Triarrhena sacchariflora in response to flooding stressCited by: 17
Author(s): Jia Wang, Hao Sun, Jiajin Sheng, Surong Jin, Fangjian Zhou, Zhongli Hu, Youxiang Diao
Software Mentions: 4
Published: over 6 years ago
10.1186/s12862-017-1103-z
De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustusCited by: 11
Author(s): Alexey Moskalev, Anna V. Kudryavtseva, Alexander S. Graphodatsky, Violetta R. Beklemisheva, Natalia A. Serdyukova, Konstantin V. Krutovsky, Vadim V. Sharov, Ivan V. Kulakovskiy, Andrey S. Lando, Artem S. Kasianov, Dmitry A. Kuzmin, Yuliya A. Putintseva, Sergey Feranchuk, Mikhail Shaposhnikov, Vadim E. Fraifeld, Dmitri Toren, А. В. Снежкина, Vasily Sitnik
Software Mentions: 4
Published: over 8 years ago
10.1002/ece3.7818
Permafrost condition determines plant community composition and community‐level foliar functional traits in a boreal peatlandCited by: 8
Author(s): Katherine M. Standen, Jennifer L. Baltzer
Software Mentions: 4
Published: about 5 years ago
10.1186/s12862-017-1087-8
Rethinking the evolution of eukaryotic metabolism: novel cellular partitioning of enzymes in stramenopiles links serine biosynthesis to glycolysis in mitochondriaCited by: 21
Author(s): Melania Abrahamian, Meenakshi S. Kagda, Audrey M. V. Ah‐Fong, Howard S. Judelson
Software Mentions: 4
Published: over 8 years ago
10.1186/s12872-020-01838-x
Bioinformatics analysis of common key genes and pathways of intracranial, abdominal, and thoracic aneurysmsCited by: 4
Author(s): Siwei Bi, Ruiqi Liu, Linfeng He, Jingyi Li, Jun Gu
Software Mentions: 4
Published: over 5 years ago
10.7150/thno.47830
LncRNA DSCAM-AS1 interacts with YBX1 to promote cancer progression by forming a positive feedback loop that activates FOXA1 transcription networkCited by: 68
Author(s): Yin Zhang, Yong-Xin Huang, Dan-Lan Wang, Bing Yang, Haiyan Yan, Lehang Lin, Yun Li, Jie Chen, Lisha Xie, Yongsheng Huang, Jian-You Liao, Kaishun Hu, Jun He, Phei Er Saw, Xiaoding Xu, Yin Ding
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.7685
Experimentally measured group direct benefits according to worker density explain group living of the termite <i>Reticulitermes chinensis</i>Cited by: 1
Author(s): Zhuangdong Bai, Yibin Liu, David Sillam‐Dussès, Ruiwu Wang
Software Mentions: 4
Published: about 5 years ago
10.1038/s41436-019-0519-9
Comorbidity landscape of the Danish patient population affected by chromosome abnormalitiesCited by: 10
Author(s): Isabella Friis Jørgensen, Francesco Russo, Anders B. Jensen, David Westergaard, Mette Lademann, Jessica Xin Hu, Søren Brunak, Kirstine Belling
Software Mentions: 4
Published: over 6 years ago
10.18632/aging.102820
Development and validation of a prognostic classifier based on HIF-1 signaling for hepatocellular carcinomaCited by: 22
Author(s): Feiwen Deng, Chen Dong, Xiaoli Wei, Shilin Lu, Xuan Luo, Jincan He, Junting Liu, Tiebao Meng, Anli Yang, Huanwei Chen
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-020-66199-z
Adipose tissue morphology, imaging and metabolomics predicting cardiometabolic risk and family history of type 2 diabetes in non-obese menCited by: 17
Author(s): Aidin Rawshani, Björn Eliasson, Araz Rawshani, Josefin Henninger, Adil Mardinoğlu, Åsa Carlsson, Maja Sohlin, Maria Ljungberg, Ann Hammarstedt, Annika Rosengren, Ulf Smith
Software Mentions: 4
Published: about 6 years ago
10.7554/eLife.24570
EED orchestration of heart maturation through interaction with HDACs is H3K27me3-independentCited by: 36
Author(s): Shanshan Ai, Yong Peng, Chen Li, Fei Gu, Xianhong Yu, Yanzhu Yue, Qing Ma, Jinghai Chen, Zhiqiang Lin, Pingzhu Zhou, Huafeng Xie, Terence Prendiville, Wen Zheng, Yuli Liu, Stuart H. Orkin, Dazhi Wang, Jia Yu, William T. Pu, Aibin He
Software Mentions: 4
Published: over 9 years ago
10.1038/s42003-021-01834-7
High resolution DNA barcode library for European butterflies reveals continental patterns of mitochondrial genetic diversityCited by: 51
Author(s): Vlad Dincă, Leonardo Dapporto, Panu Somervuo, Raluca Vodă, Sylvain Cuvelier, Martin Gascoigne‐Pees, Peter Huemer, Marko Mutanen, Paul D. N. Hebert, Roger Vila
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-021-86821-y
Prediction of single-cell mechanisms for disease progression in hypertrophic remodelling by a trans-omics approachCited by: 3
Author(s): Momoko Hamano, Seitaro Nomura, Midori Iida, Issei Komuro, Yoshihiro Yamanishi
Software Mentions: 4
Published: over 5 years ago
10.1038/s42003-020-0837-0
Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cellsCited by: 39
Author(s): Jackson A. Hoffman, Brian N. Papas, Kevin W. Trotter, Trevor Archer
Software Mentions: 4
Published: over 6 years ago
10.1155/2020/6784138
Identification of FOS as a Candidate Risk Gene for Liver Cancer by Integrated Bioinformatic AnalysisCited by: 10
Author(s): Jinwu Hu, Guangyu Ding, Pei-Yao Fu, Wei‐Guo Tang, Qiqing Sun, Xiao‐Dong Zhu, Ying‐Hao Shen, Ji Zhou, Jia Fan, Hui–Chuan Sun, Cheng Huang
Software Mentions: 4
Published: over 6 years ago
10.5414/NP301110
Molecular diagnostic testing of diffuse gliomas in the real-life setting: A practical approachCited by: 8
Author(s): Michał Bieńkowski, Adelheid Wöhrer, Patrizia Moser, Melitta Kitzwögerer, Gerda Ricken, Thomas Ströbel, Johannes A. Hainfellner
Software Mentions: 4
Published: about 8 years ago
10.3389/fimmu.2021.631472
An Inflammatory Loop Between Spleen-Derived Myeloid Cells and CD4+ T Cells Leads to Accumulation of Long-Lived Plasma Cells That Exacerbates Lupus AutoimmunityCited by: 4
Author(s): Eunkyeong Jang, Somi Cho, Sung-Jin Pyo, Jin Wu Nam, Jeehee Youn
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-016-3065-8
Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortexCited by: 35
Author(s): Jason R. Gerstner, John N. Koberstein, Adam Watson, Nikolai Zapero, Davide Risso, Terence P. Speed, Marcos G. Frank, Lucı́a Peixoto
Software Mentions: 4
Published: almost 10 years ago
10.3390/cancers12071778
Potential Added Value of PET/CT Radiomics for Survival Prognostication beyond AJCC 8th Edition Staging in Oropharyngeal Squamous Cell CarcinomaCited by: 32
Author(s): Stefan P. Haider, Tal Zeevi, Philipp Baumeister, Christoph Reichel, Kariem Sharaf, Reza Forghani, Benjamin H. Kann, Benjamin L. Judson, Manju L. Prasad, Barbara Burtness, Amit Mahajan, Sam Payabvash
Software Mentions: 4
Published: about 6 years ago
10.3390/ijms19010245
Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive ReviewCited by: 106
Author(s): Arun Sudhagar, Gokhlesh Kumar, Mansour El-Matbouli
Software Mentions: 4
Published: over 8 years ago
10.3390/ijms19010271
Integrated Analyses Reveal Overexpressed Notch1 Promoting Porcine Satellite Cells’ Proliferation through Regulating the Cell CycleCited by: 21
Author(s): Yiren Jiao, Bo Huang, Yu Chen, Guang-liang Hong, Jian Xu, Chen Hu, Chong Wang
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pgen.1008595
Super-resolution imaging of RAD51 and DMC1 in DNA repair foci reveals dynamic distribution patterns in meiotic prophaseCited by: 22
Author(s): Johan A. Slotman, Maarten W. Paul, Fabrizia Carofiglio, H. Martijn de Gruiter, Tessa Vergroesen, Lieke Koornneef, Wiggert A. van Cappellen, Adriaan B. Houtsmuller, Willy M. Baarends
Software Mentions: 4
Published: about 6 years ago
10.1186/1471-2105-14-S16-S4
cellXpress: a fast and user-friendly software platform for profiling cellular phenotypesCited by: 25
Author(s): Danai Laksameethanasan, Rui Zhen Tan, Geraldine Wei-Ling Toh, Lit‐Hsin Loo
Software Mentions: 4
Published: almost 13 years ago
10.1084/jem.20201793
A positive feedback loop reinforces the allergic immune response in human peanut allergyCited by: 10
Author(s): Xiaoying Zhou, Wei Yu, Shu‐Chen Lyu, Claudia Macaubas, Bryan Bunning, Ziyuan He, Elizabeth Mellins, Kari Nadeau
Software Mentions: 4
Published: about 5 years ago
10.1007/s00216-021-03393-6
Sample preparation strategy for the detection of steroid-like compounds using MALDI mass spectrometry imaging: pulmonary distribution of budesonide as a case studyCited by: 11
Author(s): Riccardo Zecchi, Pietro Franceschi, Laura Tigli, Davide Amidani, Chiara Catozzi, Francesca Ricci, Fabrizio Salomone, Giuseppe Pieraccini, Barbara Pioselli, Valentina Mileo
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.ppat.1004959
Fungal Morphology, Iron Homeostasis, and Lipid Metabolism Regulated by a GATA Transcription Factor in Blastomyces dermatitidisCited by: 16
Author(s): Amber J. Marty, Aimee Teo Broman, Robert Żarnowski, Teigan G. Dwyer, Laura M. Bond, Anissa Lounès-Hadj Sahraoui, Joël Fontaine, James M. Ntambi, Sündüz Keleş, Christina Kendziorski, Gregory M. Gauthier
Software Mentions: 4
Published: about 11 years ago
10.1371/journal.pone.0161168
Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil)Cited by: 20
Author(s): Juline M. Walter, Diogo A. Tschoeke, Pedro Milet Meirelles, Luciana de Oliveira, Luciana Leomil, Márcio Murilo Barboza Tenório, Rogério Valle, Paulo S. Salomon, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 4
Published: almost 10 years ago
10.1155/2020/1949415
Serum Irisin Levels, Endothelial Dysfunction, and Inflammation in Pediatric Patients with Type 2 Diabetes Mellitus and Metabolic SyndromeCited by: 21
Author(s): Anna Sofia Huerta Delgado, Daniel N Roffe-Vazquez, Adrian M. Gonzalez‐Gil, José R Villarreal-Calderón, Oscar Tamez-Rivera, Nora A. Rodríguez-Gutiérrez, Elena C. Castillo, Christian Silva-Platas, Gerardo García‐Rivas, Leticia Elizondo‐Montemayor
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pone.0103417
Non-Additive Increases in Sediment Stability Are Generated by Macroinvertebrate Species Interactions in Laboratory StreamsCited by: 26
Author(s): Lindsey K. Albertson, Bradley J. Cardinale, L. S. Sklar
Software Mentions: 4
Published: almost 12 years ago
10.1371/journal.pone.0061736
Gene Expression Signatures of Energetic Acclimatisation in the Reef Building Coral Acropora milleporaCited by: 30
Author(s): Line K. Bay, Aurélie Guérécheau, Nikos Andreakis, Karin E. Ulstrup, Mikhail V. Matz
Software Mentions: 4
Published: about 13 years ago
10.1371/journal.pone.0229745
Changes in the gut microbiota of mice orally exposed to methylimidazolium ionic liquidsCited by: 9
Author(s): Gregory R. Young, Tarek M. Abdelghany, Alistair C. Leitch, Michael Dunn, Peter G. Blain, Clare Lanyon, Matthew C. Wright
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pone.0243748
Diversity and functional prediction of microbial communities involved in the first aerobic bioreactor of coking wastewater treatment systemCited by: 14
Author(s): Jinsi Deng, Baoshan Zhang, Junting Xie, Haixia Wu, Zemin Li, Guanglei Qiu, Chaohai Wei, Shuang Zhu
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-020-76635-9
Early and accurate detection and diagnosis of heart disease using intelligent computational modelCited by: 56
Author(s): Yar Muhammad, Muhammad Tahir, Maqsood Hayat, Kil To Chong
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.ppat.1009132
Memory like NK cells display stem cell like properties after Zika virus infectionCited by: 8
Author(s): Weshely Kujur, Oscar Murillo, Sitaramaraju Adduri, Ramakrishna Vankayalapati, Nagarjun V. Konduru, Sachin Mulik
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0066798
An Experimental Test of Competition among Mice, Chipmunks, and Squirrels in Deciduous Forest FragmentsCited by: 17
Author(s): Jesse L. Brunner, Shannon Duerr, Felicia Keesing, Mary Killilea, Holly B. Vuong, Richard S. Ostfeld
Software Mentions: 4
Published: about 13 years ago
10.7717/peerj.9371
pulseTD: RNA life cycle dynamics analysis based on pulse model of 4sU-seq time course sequencing dataCited by: 0
Author(s): Xin Wang, Siyu He, Jian Li, Jun Wang, Chengyi Wang, Mingwei Wang, Danni He, Xingfeng Lv, Qiuyan Zhong, Hongjiu Wang, Zhenzhen Wang
Software Mentions: 4
Published: about 6 years ago
10.7554/eLife.28306
Defining the location of promoter-associated R-loops at near-nucleotide resolution using bisDRIP-seqCited by: 94
Author(s): Jason G Dumelie, Samie R. Jaffrey
Software Mentions: 4
Published: almost 9 years ago
10.1371/journal.pone.0045007
Genetic Diversity and Ecosystem Functioning in the Face of Multiple StressorsCited by: 44
Author(s): Fabian Roger, Anna Godhe, Lars Gamfeldt
Software Mentions: 4
Published: almost 14 years ago
10.1371/journal.ppat.1009734
Divergent metabolism between Trypanosoma congolense and Trypanosoma brucei results in differential sensitivity to metabolic inhibitionCited by: 10
Author(s): Pieter C. Steketee, Emily A. Dickie, James Iremonger, Kathryn Crouch, Edith Paxton, Siddharth Jayaraman, Omar A. Alfituri, Georgina Awuah‐Mensah, Ryan Ritchie, Achim Schnaufer, T.G. Rowan, Harry P. de Koning, Catarina Gadelha, Bill Wickstead, Michael P. Barrett, Liam J. Morrison
Software Mentions: 4
Published: about 5 years ago
10.3390/ijerph17155280
Teacher Technostress in the Chilean School SystemCited by: 29
Author(s): Carla Estrada-Muñoz, Dante Castillo, Alejandro Vega-Muñoz, Joan Boada-Grau
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0233067
No evidence for a relationship between breed cooperativeness and inequity aversion in dogsCited by: 5
Author(s): Jim McGetrick, Désirée Brucks, Sarah Marshall-Pescini, Friederike Range
Software Mentions: 4
Published: about 6 years ago
10.1186/s13073-020-0720-0
A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profilesCited by: 30
Author(s): Li Wang, Robert Sebra, John P. Sfakianos, Kimaada Allette, Wenhui Wang, Seungyeul Yoo, Nina Bhardwaj, Eric E. Schadt, Xin Yao, Matthew D. Galsky, Jun Zhu
Software Mentions: 4
Published: over 6 years ago
10.1038/s41396-018-0237-3
Opposing effects of final population density and stress on Escherichia coli mutation rateCited by: 7
Author(s): Rok Krašovec, Huw Richards, Danna R. Gifford, Roman V. Belavkin, Alastair Channon, Elizabeth Aston, Andrew J. McBain, Christopher G. Knight
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12864-016-3320-z
Stable feature selection based on the ensemble L 1 -norm support vector machine for biomarker discoveryCited by: 29
Author(s): Myungjin Moon, Kenta Nakai
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pone.0232372
Clinical feasibility of ultrafast intracranial vessel imaging with non-Cartesian spiral 3D time-of-flight MR angiography at 1.5T: An intra-individual comparison studyCited by: 10
Author(s): Thomas Sartoretti, Elisabeth Sartoretti, Árpád Schwenk, Luuk van Smoorenburg, Manoj Mannil, André Euler, Anton S. Becker, Alex Alfieri, Arash Najafi, Christoph A. Binkert, Michael Wyss, Sabine Sartoretti‐Schefer
Software Mentions: 4
Published: over 6 years ago
10.1186/s12864-020-6467-6
Diverse biological processes coordinate the transcriptional response to nutritional changes in a Drosophila melanogaster multiparent populationCited by: 8
Author(s): Enoch Ng’oma, Patricka A. Williams-Simon, Aniqa Rahman, King Eg
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-018-32904-2
Transcriptomics and co-expression networks reveal tissue-specific responses and regulatory hubs under mild and severe drought in papaya (Carica papaya L.)Cited by: 33
Author(s): Samuel David Gamboa-Tuz, Alejandro Pereira-Santana, Jesús Alejandro Zamora‐Briseño, Enrique Castaño, Francisco Espadas-Gil, Jorge Tonatiuh Ayala-Sumuano, Miguel A. Keb-Llanes, Lorenzo Felipe Sánchez Teyer, Luis Carlos Rodríguez-Zapata
Software Mentions: 4
Published: almost 8 years ago
10.18632/aging.202780
circRNA expression profiling of colon tissue from mesalazine-treated mouse of inflammatory bowel disease reveals an important circRNA-miRNA-mRNA pathwayCited by: 8
Author(s): Wei Zhou, Haiyin Zhang, Y. B. Pan, Yingbin Xu, Yongqing Cao
Software Mentions: 4
Published: over 5 years ago
10.1002/cam4.2969
Identification of hub methylated‐CpG sites and associated genes in oral squamous cell carcinomaCited by: 14
Author(s): Yuxin Dai, Qiao‐Li Lv, Tingting Qi, Jian Qu, Hongli Ni, Yongkang Liao, Peng Liu, Qiang Qu
Software Mentions: 4
Published: over 6 years ago
10.1186/s13071-021-04597-6
Gene co-expression network analysis of Trypanosoma brucei in tsetse fly vectorCited by: 5
Author(s): Kennedy W. Mwangi, Rosaline W. Macharia, Joel L. Bargul
Software Mentions: 4
Published: over 5 years ago
10.18632/aging.101691
SNCA overexpression disturbs hippocampal gene expression trajectories in midlifeCited by: 6
Author(s): Thomas Hentrich, Zinah Wassouf, Olaf Rieß, Julia M. Schulze‐Hentrich
Software Mentions: 4
Published: over 7 years ago
10.1172/jci.insight.151621
Combinatorial transcription factor profiles predict mature and functional human islet α and β cellsCited by: 21
Author(s): Shristi Shrestha, Diane Saunders, John T. Walker, Joan Camunas-Soler, Xiao-Qing Dai, Rachana Haliyur, Radhika Aramandla, Greg Poffenberger, Nripesh Prasad, Rita Bottino, Roland Stein, Jean‐Philippe Cartailler, Stephen C. J. Parker, Patrick E. MacDonald, Shawn Levy, Alvin C. Powers, Marcela Briššová
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pone.0240037
Changes in root-associated fungal communities in Triticum aestivum ssp. spelta L. and Triticum aestivum ssp. vulgare L. under drought stress and in various soil processingCited by: 12
Author(s): Sylwia Salamon, Katarzyna Mikołajczak, Lidia Błaszczyk, Karolina Ratajczak, H. Sulewska
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pone.0253037
A meta-analysis of transcriptomic profiles of Huntington’s disease patientsCited by: 14
Author(s): Manuel Seefelder, Stefan Kochanek
Software Mentions: 4
Published: about 5 years ago
10.1099/jmm.0.001256
Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitisCited by: 20
Author(s): Christopher J. Barnes, L. Rasmussen, Maria E. Asplund, Steen Wilhelm Knudsen, Maja‐Lisa Clausen, Tove Agner, Anders J. Hansen
Software Mentions: 4
Published: over 5 years ago
10.1111/acel.12928
Increased intron retention is a post‐transcriptional signature associated with progressive aging and Alzheimer’s diseaseCited by: 65
Author(s): Swarnaseetha Adusumalli, Zhen‐Kai Ngian, Wei‐Qi Lin, Touati Benoukraf, Chin‐Tong Ong
Software Mentions: 4
Published: over 7 years ago
10.1111/acel.13195
Growth differentiation factor 15 protects against the aging‐mediated systemic inflammatory response in humans and miceCited by: 59
Author(s): Ji Sun Moon, Ludger Goeminne, Jung Tae Kim, Jing Tian, Seok Hwan Kim, Ha Thi Nga, Sun Hyung Kang, Baeki E. Kang, Jin Seok Byun, Young‐Sun Lee, Jae‐Han Jeon, Minho Shong, Johan Auwerx, Dongryeol Ryu, Hyon‐Seung Yi
Software Mentions: 4
Published: about 6 years ago