Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1002789

https://doi.org/10.1371/journal.pgen.1002789

Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection

Cited by: 125
Author(s): Yoichiro Shibata, Nathan C. Sheffield, Olivier Fédrigo, Courtney C. Babbitt, Matthew Wortham, Alok K. Tewari, Darin London, Lingyun Song, Bum Kyu Lee, Vishwanath R. Iyer, Stephen C. J. Parker, Elliott H. Margulies, Gregory A. Wray, Terrence S. Furey, Gregory E. Crawford
Published: over 12 years ago

Software Mentions 4

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: HyPhy
Macroevolutionary phylogentic analysis of species trees and gene trees
Papers that mentioned: 722
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: HyPhy
HyPhy package interface library
Papers that mentioned: 722