10.1242/jcs.215822

The adaptor proteins HAP1a and GRIP1 collaborate to activate kinesin-1 isoform KIF5C
Cited by: 36
Author(s): Alison E. Twelvetrees, Flavie Lesept, Erika L.F. Holzbaur, Josef T. Kittler
Software Mentions: 4
Published: over 7 years ago

10.1186/s12917-020-02376-6

A case-control study to identify risk factors for adult-onset idiopathic megaoesophagus in Australian dogs, 2017–2018
Cited by: 2
Author(s): Michelle Renwick, Mark Stevenson, Anke Wiethoelter, Caroline Mansfield
Software Mentions: 4
Published: about 6 years ago

10.1002/lary.21825

Systematic review and meta‐analyses of randomized controlled trials examining tinnitus management
Cited by: 204
Author(s): Derek J. Hoare, Victoria L. Kowalkowski, Sujin Kang, Deborah A. Hall
Software Mentions: 4
Published: about 15 years ago

10.1097/MD.0000000000025715

Mining immune-related genes with prognostic value in the tumor microenvironment of breast invasive ductal carcinoma
Cited by: 1
Author(s): Qiang He, Shuyin Xue, Qingde Wa, Mei He, Feng Shan, Zhibing Chen, Wei Chen, Xinrong Luo
Software Mentions: 4
Published: about 5 years ago

10.1097/MD.0000000000025008

PLCG2 as a potential indicator of tumor microenvironment remodeling in soft tissue sarcoma
Cited by: 10
Author(s): Zhengtian Li, Rong Zhao, Weibo Yang, Chan Li, Jun Huang, Zhenpei Wen, Gang Du, Lingling Jiang
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-019-0650-5

Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites
Cited by: 93
Author(s): Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Annelies Geirnaert, Rachelle Prantil‐Baun, Diogo M. Camacho, David B. Chou, Hossein Baharvand, Tomás de Wouters, Magdalena Kasendra, Michael Super, Mark Cartwright, Camilla A. Richmond, David T. Breault, Christophe Lacroix, Donald E. Ingber
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pmed.1002697

Automated detection of moderate and large pneumothorax on frontal chest X-rays using deep convolutional neural networks: A retrospective study
Cited by: 146
Author(s): Andrew G. Taylor, Clinton Mielke, John Mongan
Software Mentions: 4
Published: over 7 years ago

10.1016/j.molcel.2018.09.023

Phosphorylation of Histone H4T80 Triggers DNA Damage Checkpoint Recovery
Cited by: 20
Author(s): Gonzalo Millán-Zambrano, Helena Santos‐Rosa, Fabio Puddu, Samuel Robson, Stephen Jackson, Tony Kouzarides
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2164-15-884

A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions
Cited by: 46
Author(s): Beatrix Bicskei, James E. Bron, Kevin A. Glover, John B. Taggart
Software Mentions: 4
Published: over 12 years ago

10.1073/pnas.1921536117

Spontaneous formation of autocatalytic sets with self-replicating inorganic metal oxide clusters
Cited by: 35
Author(s): Haralampos N. Miras, Cole Mathis, Weimin Xuan, De‐Liang Long, Robert Pow, Leroy Cronin
Software Mentions: 4
Published: about 6 years ago

10.1038/s41380-020-00955-5

Temporal unsnarling of brain’s acute neuroinflammatory transcriptional profiles reveals panendothelitis as the earliest event preceding microgliosis
Cited by: 24
Author(s): Mahesh Chandra Kodali, Hao Chen, Francesca‐Fang Liao
Software Mentions: 4
Published: over 5 years ago

10.3390/pathogens9070524

The Effect of Natural Feline Coronavirus Infection on the Host Immune Response: A Whole-Transcriptome Analysis of the Mesenteric Lymph Nodes in Cats with and without Feline Infectious Peritonitis
Cited by: 5
Author(s): Alexandra Malbon, Giancarlo Russo, Carole Burgener, Emi Barker, Marina L. Meli, Séverine Tasker, Anja Kipar
Software Mentions: 4
Published: about 6 years ago

10.1098/rsos.190744

Species-specific effects of passive warming in an Antarctic moss system
Cited by: 14
Author(s): Hannah Prather, Angélica Casanova-Katny, Andrew Clements, Matthew W. Chmielewski, Mehmet Ali Balkan, Erin E. Shortlidge, Todd N. Rosenstiel, Sarah M. Eppley
Software Mentions: 4
Published: over 6 years ago

10.1098/rsos.201385

The relationship between mental well-being and dysregulated gaming: a specification curve analysis of core and peripheral criteria in five gaming disorder scales
Cited by: 4
Author(s): Nick Ballou, Antonius J. van Rooij
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.10437

Comprehensive pathway-related genes signature for prognosis and recurrence of ovarian cancer
Cited by: 1
Author(s): Xinnan Zhao, Miao He
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10933

Tissue-specific transcriptome analysis of drought stress and rehydration in Trachycarpus fortunei at seedling
Cited by: 2
Author(s): Xiaozhou Feng, Zhao Yang, Xiurong Wang
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.9452

Integrative analysis of competitive endogenous RNA network reveals the regulatory role of non-coding RNAs in high-glucose-induced human retinal endothelial cells
Cited by: 6
Author(s): Nanjue Cao, Henan Liu, Feng Dong, Wei Wang, Wei Sun, Gang Wang
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.7313

Bioinformatics analysis of microarray data to identify the candidate biomarkers of lung adenocarcinoma
Cited by: 37
Author(s): Tingting Guo, Hongwen Ma, Yuting Zhou
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.9627

Mining of prognosis-related genes in cervical squamous cell carcinoma immune microenvironment
Cited by: 5
Author(s): Jiong Ma, Pu Cheng, Xuejun Chen, Chunxia Zhou, Zheng Wei
Software Mentions: 4
Published: almost 6 years ago

10.1155/2019/5058313

Transcriptome Analysis of Hypertrophic Heart Tissues from Murine Transverse Aortic Constriction and Human Aortic Stenosis Reveals Key Genes and Transcription Factors Involved in Cardiac Remodeling Induced by Mechanical Stress
Cited by: 7
Author(s): Peng Yu, Baoli Zhang, Ming Liu, Ying Yu, Jian Zhao, Chunyu Zhang, Yana Li, Lei Zhang, Xue Yang, Hong Jiang, Yunzeng Zou, Junbo Ge
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0176339

A systematic approach to estimate the distribution and total abundance of British mammals
Cited by: 41
Author(s): Simon Croft, Aliénor L. M. Chauvenet, Graham C. Smith
Software Mentions: 4
Published: about 9 years ago

10.1016/j.lanepe.2021.100186

Long Covid in adults discharged from UK hospitals after Covid-19: A prospective, multicentre cohort study using the ISARIC WHO Clinical Characterisation Protocol
Cited by: 170
Author(s): Louise Sigfrid, Thomas M Drake, Ellen Pauley, Edwin C. Jesudason, Piero Olliaro, Wei Shen Lim, Annelies Gillesen, Colin Berry, David J. Lowe, Joanne McPeake, Nazir Lone, Daniel Munblit, Müge Çevik, A Casey, Peter Bannister, Clark D Russell, Lynsey Goodwin, Antonia Ho, Lance Turtle, Margaret O’Hara, Claire Hastie, Chloe Donohue, Rebecca G. Spencer, Cara Donegan, Alison Gummery, Janet Harrison, Hayley Hardwick, Claire E. Hastie, Gail Carson, Laura Merson, J Kenneth Baillie, Peter Openshaw, Ewen M Harrison, Annemarie B Docherty, Malcolm G Semple, Janet T. Scott
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-017-02193-2

Multitrophic Effects of Belowground Parasitoid Learning
Cited by: 17
Author(s): Denis S. Willett, Hans T. Alborn, Lukasz L. Stelinski
Software Mentions: 4
Published: about 9 years ago

10.1002/2211-5463.12983

Identification of modules and novel prognostic biomarkers in liver cancer through integrated bioinformatics analysis
Cited by: 5
Author(s): Bo Shen, Kun Li, Yuting Zhang
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12955-019-1235-5

Assessing the severity of functional impairment of psychiatric disorders: equipercentile linking the mini-ICF-APP and CGI
Cited by: 10
Author(s): Stephan Egger, Godehard Weniger, Mario Müller, Julio Bobes, Erich Seifritz, Stefan Vetter
Software Mentions: 4
Published: over 6 years ago

10.3389/fbioe.2020.00206

Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort
Cited by: 4
Author(s): Yang Sheng, Cheng Yan-ping, Tong Liu, Ning Liu, Yufeng Liu, Geyu Liang
Software Mentions: 4
Published: over 6 years ago

10.3389/fbioe.2020.00266

Characterization of lncRNA-Associated ceRNA Network to Reveal Potential Prognostic Biomarkers in Lung Adenocarcinoma
Cited by: 8
Author(s): Yang Wang, Ruyi He, Lixin Ma
Software Mentions: 4
Published: over 6 years ago

10.1107/S1399004713032549

Ensemble refinement shows conformational flexibility in crystal structures of human complement factor D
Cited by: 29
Author(s): Federico Forneris, B. Tom Burnley, Piet Gros
Software Mentions: 4
Published: over 12 years ago

10.1038/s41598-018-25019-1

A Temporal Examination of Platelet Counts as a Predictor of Prognosis in Lung, Prostate, and Colon Cancer Patients
Cited by: 24
Author(s): Joanna L. Sylman, Hunter Boyce, Annachiara Mitrugno, Garth W. Tormoen, I‐Chun Thomas, Todd H. Wagner, Jennifer S. Lee, John T. Leppert, Owen J. T. McCarty, Parag Mallick
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-26498-y

Possible Obesogenic Effects of Bisphenols Accumulation in the Human Brain
Cited by: 39
Author(s): Pantelis Charisiadis, Xanthi Andrianou, Thomas P. van der Meer, Wilfred F. A. den Dunnen, D.F. Swaab, Bruce H. R. Wolffenbuttel, Konstantinos C. Makris, Jana V. van Vliet-Ostaptchouk
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-27314-3

Sample tracking in microbiome community profiling assays using synthetic 16S rRNA gene spike-in controls
Cited by: 16
Author(s): Dieter M. Tourlousse, Akiko Ohashi, Yuji Sekiguchi
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-019-42692-y

Risks of hydroclimatic regime shifts across the western United States
Cited by: 2
Author(s): Subhrendu Gangopadhyay, Gregory J. McCabe, Gregory T. Pederson, Jessica Martin, Jeremy S. Littell
Software Mentions: 4
Published: over 7 years ago

10.3389/fcell.2020.558961

Identification of Prognostic Model and Biomarkers for Cancer Stem Cell Characteristics in Glioblastoma by Network Analysis of Multi-Omics Data and Stemness Indices
Cited by: 27
Author(s): Jianyang Du, Xiuwei Yan, Shan Mi, Yuan Li, Hang Ji, Kezuo Hou, Shuai Ma, Yixu Ba, Peng Zhou, Lei Chen, Rui Xie, Shaoshan Hu
Software Mentions: 4
Published: almost 6 years ago

10.3389/fnmol.2019.00293

Identification of lncRNAs Associated With Neuroblastoma in Cross-Sectional Databases: Potential Biomarkers
Cited by: 13
Author(s): Bharat Prajapati, Mena Fatma, Mahar Fatima, Tipu Khan, Subrata Sinha, Prahlad K. Seth
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0187906

The interplay of various sources of noise on reliability of species distribution models hinges on ecological specialisation
Cited by: 30
Author(s): Alaaeldin Soultan, Kamran Safi
Software Mentions: 4
Published: over 8 years ago

10.1080/20013078.2018.1461450

ISEV2018 abstract book
Cited by: 157
Author(s): Clotilde Théry, Kenneth W. Witwer
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-48665-5

Near-future ocean acidification does not alter the lipid content and fatty acid composition of adult Antarctic krill
Cited by: 11
Author(s): Jessica A. Ericson, Nicole Hellessey, So Kawaguchi, Peter D. Nichols, Stephen Nicol, Nils Hoem, Patti Virtue
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2021.680413

Identification of a Prognostic Signature for Ovarian Cancer Based on the Microenvironment Genes
Cited by: 9
Author(s): Xiao Huo, Hengzi Sun, Shuangwu Liu, Bing Liang, Huimin Bai, Shuzhen Wang, Shuhong Li
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-48283-1

De novo transcriptome assembly for four species of crustose coralline algae and analysis of unique orthologous genes
Cited by: 9
Author(s): Tessa M. Page, Carmel McDougall, Guillermo Díaz-Pulido
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-50046-x

Autoregulation assessment by direct visualisation of pial arterial blood flow in the piglet brain
Cited by: 13
Author(s): Samuel Patrick Klein, Veerle De Sloovere, Geert Meyfroidt, Bart Depreitere
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2021.634162

Significance of RNA N6-Methyladenosine Regulators in the Diagnosis and Subtype Classification of Childhood Asthma Using the Gene Expression Omnibus Database
Cited by: 32
Author(s): Bing Dai, Feifei Sun, Xuxu Cai, Chunlu Li, Henan Liu, Yunxiao Shang
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00427

Bioinformatics Analysis Reveals Biomarkers With Cancer Stem Cell Characteristics in Lung Squamous Cell Carcinoma
Cited by: 38
Author(s): Yi Liao, Hua Xiao, Mengqing Cheng, Xiaoxuan Fan
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2020.00877

Muscle Transcriptome Analysis Reveals Potential Candidate Genes and Pathways Affecting Intramuscular Fat Content in Pigs
Cited by: 25
Author(s): Xueyan Zhao, Hongmei Hu, Haichao Lin, Wang Cheng, Yanping Wang, Jiying Wang
Software Mentions: 4
Published: almost 6 years ago

10.3390/s16050645

An Integrated Simulation Module for Cyber-Physical Automation Systems
Cited by: 18
Author(s): Francesco Ferracuti, Alessandro Freddi, Andrea Monteriù, Mariorosario Prist
Software Mentions: 4
Published: about 10 years ago

10.3389/fgene.2020.563954

Identification of Critical Genes and Proteins for Stent Restenosis Induced by Esophageal Benign Hyperplasia in Esophageal Cancer
Cited by: 4
Author(s): Li Weng, Shanshan Shen, Shaoqiu Wu, Xiaoxing Yin, Bingyan Liu, Ming Shang, Xiaoping Zou, Aiwu Mao
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.666371

A Novel Signature for Predicting Prognosis of Smoking-Related Squamous Cell Carcinoma
Cited by: 4
Author(s): Chang Chen, Xiaoqing Cheng, Shuyan Li, Huanghui Chen, Mengjing Cui, Linlin Bian, Hui Jin
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.613744

Integrated Weighted Gene Co-expression Network Analysis Identified That TLR2 and CD40 Are Related to Coronary Artery Disease
Cited by: 6
Author(s): Bin Qi, Jianhong Chen, Tao Lin, Chuan-Meng Zhu, Yong Wang, Guo-Xiong Deng, Miao Liu
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.671179

Significance of N6-Methyladenosine RNA Methylation Regulators in Immune Infiltrates of Ovarian Cancer
Cited by: 9
Author(s): Jing Gu, Fangfang Bi
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0140839

Climatic and Landscape Influences on Fire Regimes from 1984 to 2010 in the Western United States
Cited by: 31
Author(s): Zhi Hua Liu, Michael C. Wimberly
Software Mentions: 4
Published: almost 11 years ago

10.3389/fgene.2021.741608

Identification of Key Regulators of Hepatitis C Virus-Induced Hepatocellular Carcinoma by Integrating Whole-Genome and Transcriptome Sequencing Data
Cited by: 7
Author(s): L. Chen, Wei Zhang, Yiran Ben
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2018.00412

Network, Transcriptomic and Genomic Features Differentiate Genes Relevant for Drug Response
Cited by: 14
Author(s): Janet Piñero, Abel González-Pérez, Emre Güney, Joaquim Aguirre‐Plans, Ferrán Sanz, Baldo Oliva, Laura I. Furlong
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2021.599261

Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection
Cited by: 53
Author(s): Komudi Singh, Yunching Chen, Shakiba Hassanzadeh, Han Kim, Jennifer Judy, Fayaz Seifuddin, Ilker Tunc, Michael N. Sack, Mehdi Pirooznia
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.584624

Development and Validation of an RNA-Binding Protein-Based Prognostic Model for Ovarian Serous Cystadenocarcinoma
Cited by: 1
Author(s): Yunan He, Sen Zeng, Shunjie Hu, Fengqian Zhang, Nianchun Shan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2021.612382

High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat, Fagopyrum esculentum
Cited by: 15
Author(s): Aleksey A. Penin, Artem S. Kasianov, Anna V. Klepikova, Ilya Kirov, Evgeny S. Gerasimov, А Н Фесенко, Maria D. Logacheva
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00829

Evolutionary History of the Marchantia polymorpha Complex
Cited by: 9
Author(s): Anna Malin Linde, Weerachon Sawangproh, Nils Cronberg, Péter Szövényi, Ulf Lagercrantz
Software Mentions: 4
Published: about 6 years ago

10.3389/fmolb.2021.653805

High Expression Levels of CDK1 and CDC20 in Patients With Lung Squamous Cell Carcinoma are Associated With Worse Prognosis
Cited by: 3
Author(s): Huan Deng, Hang Qin, Deyan Shen, Hangjie Ying, Yibi Zhang, Qinying Xu, Ming Chen
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2021.679031

Identification and Validation of Immune-Related Gene Signature for Predicting Lymph Node Metastasis and Prognosis in Lung Adenocarcinoma
Cited by: 19
Author(s): Ru Jia, Zhilin Sui, Hongdian Zhang, Zhentao Yu
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2021.688298

Identification of a Prognostic Signature Associated With the Homeobox Gene Family for Bladder Cancer
Cited by: 9
Author(s): Bingqi Dong, Jiaming Liang, Li Ding, Wenping Song, Jinbo Song, Mingkai Zhu, Shufang Zhao, Yongkang Ma, Tiejun Yang
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2021.583028

CCR7 Has Potential to Be a Prognosis Marker for Cervical Squamous Cell Carcinoma and an Index for Tumor Microenvironment Change
Cited by: 4
Author(s): Weijie Tian, Penghui Feng, Jun Wang, Ting Yan, Qing-Feng Qin, Donglin Li, Wei Liang
Software Mentions: 4
Published: over 5 years ago

10.1186/s13073-019-0651-9

Implementation of a genomic medicine multi-disciplinary team approach for rare disease in the clinical setting: a prospective exome sequencing case series
Cited by: 20
Author(s): Jenny C Taylor, Judith Craft, Edward Blair, Sarah Wordsworth, David Beeson, Saleel Chandratre, Judith Cossins, Tracy Lester, Andrea H. Németh, Elizabeth Ormondroyd, Smita Y. Patel, Alistair T. Pagnamenta, Jenny C Taylor, Kate Thomson, Hugh Watkins, Wilkie Aom., Julian C. Knight
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-021-84774-w

Culture and differentiation of rabbit intestinal organoids and organoid-derived cell monolayers
Cited by: 8
Author(s): Egi Kardia, Michael Frese, Elena Smertina, Tanja Strive, Xi‐Lei Zeng, Mary K. Estes, Robyn N. Hall
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2021.622643

Immune-Inhibitory Gene Expression is Positively Correlated with Overall Immune Activity and Predicts Increased Survival Probability of Cervical and Head and Neck Cancer Patients
Cited by: 10
Author(s): Megha Budhwani, Gavin Turrell, Meihua Yu, Ian H. Frazer, Ahmed M. Mehdi, Janin Chandra
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2021.696072

Decreased Expression of PACSIN1 in Brain Glioma Samples Predicts Poor Prognosis
Cited by: 6
Author(s): Zimu Zhou, Zhiyuan Jia, Xi-an Fu, Rui Ma, Ren Yuting, Yuan Wang, Tao Wen, Ming Ma, Yinlong Liu, Enfang Shan
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-86406-9

Extreme philopatry and genetic diversification at unprecedented scales in a seabird
Cited by: 6
Author(s): D. K. Danckwerts, Laurence Humeau, Patrick Pinet, Christopher D. McQuaid, Matthieu Le Corre
Software Mentions: 4
Published: over 5 years ago

10.3389/fnmol.2018.00375

L-Lactate Regulates the Expression of Synaptic Plasticity and Neuroprotection Genes in Cortical Neurons: A Transcriptome Analysis
Cited by: 57
Author(s): Michael B. Margineanu, Hanan Mahmood, Hubert Fiumelli, Pierre J. Magistretti
Software Mentions: 4
Published: almost 8 years ago

10.3389/fnmol.2021.624881

Identification of Natural Antisense Transcripts in Mouse Brain and Their Association With Autism Spectrum Disorder Risk Genes
Cited by: 0
Author(s): Baran Koç, Geoffrey Fucile, Roland Schmucki, Nicolas Giroud, Tobias Bergauer, Benjamin J. Hall
Software Mentions: 4
Published: over 5 years ago

10.1186/s13040-015-0052-6

DNA microarray integromics analysis platform
Cited by: 11
Author(s): Tomasz Waller, Tomasz Gubała, Krzysztof Sarapata, Monika Piwowar, Wiktor Jurkowski
Software Mentions: 4
Published: about 11 years ago

10.3389/fnins.2021.605654

Alteration of N6 -Methyladenosine mRNA Methylation in a Rat Model of Cerebral Ischemia–Reperfusion Injury
Cited by: 34
Author(s): Dazhuang Yi, Qunhui Wang, Yuhao Zhao, Shuhui Yu, Hong You, Jian Wang, Renjie Liu, Shi Zhong-qiang, Xuan Chen, Qi Luo
Software Mentions: 4
Published: over 5 years ago

10.3389/fnins.2020.562292

Human iPSC-Derived Neuronal Cells From CTBP1-Mutated Patients Reveal Altered Expression of Neurodevelopmental Gene Networks
Cited by: 5
Author(s): S. Vijayalingam, Uthayashanker R. Ezekiel, Fenglian Xu, T. Subramanian, Elizabeth Geerling, Brittany Hoelscher, KayKay San, Aravinda Ganapathy, Kyle Pemberton, Eric Tycksen, Amelia K. Pinto, James D. Brien, David B. Beck, Wendy K. Chung, Christina A. Gurnett, G. Chinnadurai
Software Mentions: 4
Published: almost 6 years ago

10.1093/bioinformatics/bty125

AltHapAlignR: improved accuracy of RNA-seq analyses through the use of alternative haplotypes
Cited by: 28
Author(s): Wanseon Lee, Katharine Plant, Peter Humburg, Julian C. Knight
Software Mentions: 4
Published: over 8 years ago

10.18632/aging.103172

Overexpression of miR-142-5p inhibits the progression of nonalcoholic steatohepatitis by targeting TSLP and inhibiting JAK-STAT signaling pathway
Cited by: 12
Author(s): Chao Zhou, Pu Wang, Lei Lei, Yi Huang, Yue Wu
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2021.614497

Molecular and Clinical Characterization of CCT2 Expression and Prognosis via Large-Scale Transcriptome Profile of Breast Cancer
Cited by: 6
Author(s): Qiang Liu, Yihang Qi, Xiangyi Kong, Xiangyu Wang, Wenxiang Zhang, Jie Zhai, Yazhe Yang, Yi Fang, Jing Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.636461

Identification of Early Diagnostic and Prognostic Biomarkers via WGCNA in Stomach Adenocarcinoma
Cited by: 21
Author(s): Ruoyue Tan, Guanghui Zhang, Ruochen Liu, Jingyao Hou, Zhen Dong, Chaowei Deng, Sicheng Wan, Xiaodong Liu, Hongjuan Cui
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.589168

NFATC2 Modulates Radiation Sensitivity in Dermal Fibroblasts From Patients With Severe Side Effects of Radiotherapy
Cited by: 0
Author(s): Joshua Dulong, Clara Kouakou, Yasmina Mesloub, Julie Rorteau, Sandra Moratille, Fabien Chevalier, Tatiana Vinasco-Sandoval, Michèle Martin, Jérôme Lamartine
Software Mentions: 4
Published: over 5 years ago

10.1016/j.gpb.2019.05.005

Genome-wide 5-Hydroxymethylcytosine Profiling Analysis Identifies MAP7D1 as A Novel Regulator of Lymph Node Metastasis in Breast Cancer
Cited by: 8
Author(s): Shuang‐Ling Wu, Xiaoyi Zhang, Mengqi Chang, Changcai Huang, Jun Qian, Qing Li, Fang Yuan, Lihong Sun, Xinmiao Yu, Xinmiao Cui, Jiaxin Jiang, Meng-Yao Cui, Ye Liu, Hengchao Wu, Liang Zeng, Xiaoyue Wang, Yamei Niu, Wei‐Min Tong, Feng Jin
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0243595

Extreme value theory as a framework for understanding mutation frequency distribution in cancer genomes
Cited by: 2
Author(s): Natsuki Tokutomi, Kenta Nakai, Sumio Sugano
Software Mentions: 4
Published: almost 5 years ago

10.1093/gigascience/giaa109

A map of tumor–host interactions in glioma at single-cell resolution
Cited by: 31
Author(s): Francesca Pia Caruso, Luciano Garofano, Fulvio D’Angelo, Kai Yu, Fuchou Tang, Jinzhou Yuan, Jing Zhang, Luigi Cerulo, Stefano Maria Pagnotta, Davide Bedognetti, Peter A. Sims, Mario L. Suvà, Xiao‐Dong Su, Anna Lasorella, Antonio Iavarone, Michele Ceccarelli
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.dib.2020.106704

Datasets and analyses of molecular dynamics simulations of covalent binary and ternary complexes of MHC class I-related molecule/T-cell receptor (MR1/TCR) agonists to understand complex formation and conditions of fluorescent labelling
Cited by: 0
Author(s): Anke Steinmetz, Thomas Yvorra, Pascal Retailleau, Olivier Lantz, Frédéric Schmidt
Software Mentions: 4
Published: over 5 years ago

10.1093/bioinformatics/btx143

The RNASeq-er API—a gateway to systematically updated analysis of public RNA-seq data
Cited by: 26
Author(s): Robert Petryszak, Nuno A. Fonseca, Anja Füllgrabe, Laura Huerta, Maria Keays, Y. Amy Tang, Alvis Brāzma
Software Mentions: 4
Published: over 9 years ago

10.1186/s13395-020-00227-4

Transgenic mice expressing tunable levels of DUX4 develop characteristic facioscapulohumeral muscular dystrophy-like pathophysiology ranging in severity
Cited by: 31
Author(s): Takako I. Jones, Guo-Liang Chew, Pamela Barraza‐Flores, Spencer Schreier, Monique Ramirez, Ryan D. Wuebbles, Dean J. Burkin, Robert K. Bradley
Software Mentions: 4
Published: over 6 years ago

10.1136/thoraxjnl-2020-216512

Impact of COVID-19 national lockdown on asthma exacerbations: interrupted time-series analysis of English primary care data
Cited by: 54
Author(s): Syed Ahmar Shah, Jennifer K Quint, Bright I. Nwaru, Aziz Sheikh
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.44436

DNA methylation profiling to predict overall survival risk in gastric cancer: development and validation of a nomogram to optimize clinical management
Cited by: 7
Author(s): Xianxiong Ma, Hengyu Chen, Guobin Wang, Lei Li, Kaixiong Tao
Software Mentions: 4
Published: over 6 years ago

10.7150/jca.49262

Pathologic evolution-related Gene Analysis based on both single-cell and bulk transcriptomics in Colorectal Cancer
Cited by: 3
Author(s): Jiali Li, Zhao-Yi Zeng, Jiarui Chen, Xingyu Liu, Xueping Jiang, Wenjie Sun, Yuan Luo, Jiangbo Ren, Yan Gong, Conghua Xie
Software Mentions: 4
Published: over 6 years ago

10.7150/jca.48664

MMP9 and IGFBP1 Regulate Tumor Immune and Drive Tumor Progression in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Tianbo Xu, Su Gao, Jingchong Liu, Yu Huang, Ke Chen, Xiaoping Zhang
Software Mentions: 4
Published: over 5 years ago

10.3389/fbioe.2020.602937

Evaluation of Hydrogen Peroxide Fumigation and Heat Treatment for Standard Emergency Arthropod Inactivation in BSL-3 Insectaries
Cited by: 1
Author(s): Irina Häcker, R. Koller, Gerrit Eichner, Martin Jakob, Eleni Liapi, Johanna Rühl, Tanja Rehling, Marc F. Schetelig
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.52105

Identification of the hub genes and prognostic indicators of gastric cancer and correlation of indicators with tumor-infiltrating immune cell levels
Cited by: 4
Author(s): Yun Ji, Lu Gao, Can Zhang, Xu Sun, Liping Dai, Zhenyu Ji, Jianying Zhang, Zhida Zhang, Weimin Cao, Yang Zhao, Liguo Zhang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-29951-0

Scenario planning with linked land-sea models inform where forest conservation actions will promote coral reef resilience
Cited by: 29
Author(s): Jade M. S. Delevaux, Stacy D. Jupiter, Kostantinos A. Stamoulis, Leah L. Bremer, Amelia S. Wenger, Rachel Dacks, Peter Garrod, K. A. Falinski, Tamara Ticktin
Software Mentions: 4
Published: almost 8 years ago

10.1002/jcb.29128

NCF2, MYO1F, S1PR4, and FCN1 as potential noninvasive diagnostic biomarkers in patients with obstructive coronary artery: A weighted gene co‐expression network analysis
Cited by: 24
Author(s): Xiangang Mo, Wei Liu, Yunan Yang, Saber Imani, Shan Lu, Guorong Dan, Xuqiang Nie, Jun Yan, Rong Zhan, Xiaohui Li, Youcai Deng, Bingbo Chen, Yuchen Cai
Software Mentions: 4
Published: about 7 years ago

10.1111/jcmm.14585

Differential coexpression networks in bronchiolitis and emphysema phenotypes reveal heterogeneous mechanisms of chronic obstructive pulmonary disease
Cited by: 11
Author(s): Jiangyue Qin, Ting Yang, Ni Zeng, Chun Wan, Lijuan Gao, Xiaoou Li, Lei Chen, Yongchun Shen, Fuqiang Wen
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12866-018-1154-3

A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera
Cited by: 108
Author(s): Rachael Lappan, Kara Imbrogno, Chisha Sikazwe, Denise Anderson, D. Mok, Harvey Coates, Shyan Vijayasekaran, Paul Bumbak, Christopher C Blyth, Sarra E. Jamieson, Christopher Peacock
Software Mentions: 4
Published: over 8 years ago

10.1111/jcmm.14830

Identification of immune‐enhanced molecular subtype associated with BRCA1 mutations, immune checkpoints and clinical outcome in ovarian carcinoma
Cited by: 23
Author(s): Mingjun Zheng, Yuexin Hu, Rui Gou, Ouxuan Liu, Xin Nie, Xiao Li, Qing Liu, Yingying Hao, Juanjuan Liu, Bei Lin
Software Mentions: 4
Published: over 6 years ago

10.1111/jcmm.15370

Genome‐Wide Analysis of circular RNAs and validation of hsa_circ_0006719 as a potential novel diagnostic biomarker in congenital scoliosis patients
Cited by: 1
Author(s): Gang Liu, Jianxiong Shen, Chong Chen, Yang Jiao, Zheng Li, Haining Tan, Youxi Lin, Tianhua Rong
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0178217

Automated prediction of emphysema visual score using homology-based quantification of low-attenuation lung region
Cited by: 8
Author(s): Motohiro Nishio, Kazuaki Nakane, Takeshi Kubo, Masahiro Yakami, Yutaka Emoto, Masaki Nishio, Kaori Togashi
Software Mentions: 4
Published: about 9 years ago

10.1038/s42003-020-01356-8

Machine learning enables improved runtime and precision for bio-loggers on seabirds
Cited by: 20
Author(s): Joseph Korpela, Hirokazu Suzuki, S. Matsumoto, Yuichi Mizutani, Masaki Samejima, Taira Maekawa, Junichi Nakai, Ken Yoda
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.15505

Asiaticoside might attenuate bleomycin‐induced pulmonary fibrosis by activating cAMP and Rap1 signalling pathway assisted by A2AR
Cited by: 18
Author(s): Jing Luo, Ting Zhang, Ce Zhu, Junwei Sun, Wenjing Zhu, Wenxiu Ai, Xiaoying Huang, Xiaobing Wang
Software Mentions: 4
Published: about 6 years ago

10.1111/jcmm.16221

Expression and prognostic characteristics of m ⁵ C regulators in low‐grade glioma
Cited by: 11
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.16393

TTN/OBSCN ‘Double‐Hit’ predicts favourable prognosis, ‘immune‐hot’ subtype and potentially better immunotherapeutic efficacy in colorectal cancer
Cited by: 33
Author(s): Xinwei Han, Libo Wang, Chunguang Guo, Long Liu, Dechao Jiao, Zhenqiang Sun, Kunpeng Wu, Yanan Zhao
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.16831

Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
Cited by: 7
Author(s): Meng Xiao, Chuang Du, Chuanbo Zhang, Xinzhong Zhang, Shaomin Li, Dainan Zhang, Wang Jia
Software Mentions: 4
Published: almost 5 years ago

10.3390/jcm10132973

Meteorin Is a Novel Therapeutic Target for Wet Age-Related Macular Degeneration
Cited by: 4
Author(s): Kimberley Delaunay, Alexandre Sellam, Virginie Dinet, Alexandre Moulin, Min Zhao, Emmanuelle Gélizé, Jérémie Canonica, Marie‐Christine Naud, Patricia Crisanti-Lassiaz, Francine Behar‐Cohen
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/4581954

Comprehensive Analysis of Differentially Expressed miRNAs and mRNAs Reveals That miR-181a-5p Plays a Key Role in Diabetic Dermal Fibroblasts
Cited by: 4
Author(s): Peng Liu, Yi Zhu, Qin Li, Biao Cheng
Software Mentions: 4
Published: almost 6 years ago