10.1093/gigascience/giaa041

Community standards for open cell migration data
Cited by: 11
Author(s): Alejandra González-Beltrán, Paola Masuzzo, Christophe Ampè, Gert-Jan Bakker, Sébastien Besson, Robert H. Eibl, Peter Friedl, Matthias Gunzer, Mark Kittisopikul, Sylvia E. Le Dévédec, Simone Leo, Josh Moore, Yael Paran, Jaime Prilusky, Philippe Rocca-Serra, Philippe Roudot, Marc Schuster, Gwendolien Sergeant, Staffan Strömblad, Jason R. Swedlow, Merijn van Erp, Marleen Van Troys, Assaf Zaritsky, Susanna Assunta Sansone, Lennart Martens
Software Mentions: 4
Published: about 6 years ago

10.3390/s20144062

A Waypoint Tracking Controller for Autonomous Road Vehicles Using ROS Framework
Cited by: 15
Author(s): Raquel Lázaro Gutiérrez, Elena López-Guillén, Luis M. Bergasa, Rafael Barea, Olga Gloria Barbón Pérez, Carlos Gómez-Huélamo, Felipe Arango, Javier Del Egido, Joaquín López-Fernández
Software Mentions: 4
Published: about 6 years ago

10.1186/s13104-021-05455-5

Phylogenetic signal in floral temperature patterns
Cited by: 3
Author(s): Sean A. Rands, Michael Harrap
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-02361-1

Multiplexed imaging analysis of the tumor-immune microenvironment reveals predictors of outcome in triple-negative breast cancer
Cited by: 21
Author(s): Aalok Patwa, Rikiya Yamashita, Long Jin, Tyler Risom, Michael Angelo, Leeat Keren, Daniel L. Rubin
Software Mentions: 4
Published: about 5 years ago

10.1007/s10339-021-01012-x

Landmarks in wayfinding: a review of the existing literature
Cited by: 33
Author(s): Demet Yeşiltepe, Ruth Dalton, Ayşe Özbil Torun
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0067720

Factors Determining Forest Diversity and Biomass on a Tropical Volcano, Mt. Rinjani, Lombok, Indonesia
Cited by: 26
Author(s): Gbadamassi G.O. Dossa, Ekananda Paudel, Junichi Fujinuma, Haiying Yu, Wanlop Chutipong, Zuoqiang Yuan, Sherryl L. Paz, Rhett D. Harrison
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0215531

ETDB-Caltech: A blockchain-based distributed public database for electron tomography
Cited by: 36
Author(s): Davi R. Ortega, Catherine M. Oikonomou, H. Ding, Prudence Rees-Lee, Alexandria, Grant J. Jensen
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1008222

Genome Complexity Browser: Visualization and quantification of genome variability
Cited by: 1
Author(s): Alexander I. Manolov, Dmitry N. Konanov, Dmitry E. Fedorov, Ivan Osmolovsky, Rinat Vereshchagin, Elena N. Ilina
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-74064-2

Sea ice variability and maritime activity around Svalbard in the period 2012–2019
Cited by: 25
Author(s): Alexandra Stocker, Angelika Renner, Maaike Knol-Kauffman
Software Mentions: 4
Published: almost 6 years ago

10.3389/fninf.2019.00056

Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform
Cited by: 7
Author(s): Raghu Sesha Iyengar, Madhav Vinodh Pithapuram, Amreek Singh, Madhusudan Raghavan
Software Mentions: 4
Published: almost 7 years ago

10.1093/sysbio/syz080

The Implications of Lineage-Specific Rates for Divergence Time Estimation
Cited by: 15
Author(s): Tom Carruthers, Michael J. Sanderson, Robert W. Scotland
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2018.00280

Physiological and Metagenomic Characterizations of the Synergistic Relationships between Ammonia- and Nitrite-Oxidizing Bacteria in Freshwater Nitrification
Cited by: 14
Author(s): Mingwei Cai, Siu-Kin Ng, Chee Kent Lim, Hsu Feng Lu, Yangyang Jia, Patrick K. H. Lee
Software Mentions: 4
Published: over 8 years ago

10.1186/s13024-021-00423-w

Methods to investigate intrathecal adaptive immunity in neurodegeneration
Cited by: 11
Author(s): Hamilton Oh, Olivia Leventhal, Divya Channappa, Victor W. Henderson, Tony Wyss‐Coray, Benoit Lehallier, David Gate
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.35551

Ssd1 and Gcn2 suppress global translation efficiency in replicatively aged yeast while their activation extends lifespan
Cited by: 54
Author(s): Zheng Hu, Bo Xia, Spike D. L. Postnikoff, Zih Jie Shen, Alin Tomoiaga, Troy A. A. Harkness, Ja Hwan Seol, Wei Li, Kaifu Chen, Jessica K. Tyler
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-019-55978-y

Rumen Bacteria and Serum Metabolites Predictive of Feed Efficiency Phenotypes in Beef Cattle
Cited by: 30
Author(s): Brooke A. Clemmons, Cameron Martino, Joshua B. Powers, Shawn R. Campagna, Brynn H. Voy, Dallas R. Donohoe, James Gaffney, Mallory Embree, Phillip R. Myer
Software Mentions: 4
Published: over 6 years ago

10.1002/advs.201903438

Medical Gas Plasma Jet Technology Targets Murine Melanoma in an Immunogenic Fashion
Cited by: 75
Author(s): Sander Bekeschus, Ramona Clemen, Felix Nießner, Sanjeev Kumar Sagwal, Eric Freund, Anke Schmidt
Software Mentions: 4
Published: over 6 years ago

10.1007/s00277-020-04068-5

Long-term survival and polyclonal immunoglobulin reconstitution after allogeneic stem cell transplantation in multiple myeloma
Cited by: 3
Author(s): Christine Eisfeld, Eva Eßeling, Ramona Wullenkord, Cyrus Khandanpour, Julia Reusch, Jan‐Henrik Mikesch, Christian Reicherts, Andrea Kerkhoff, Christoph Schliemann, Torsten Keßler, Rolf M. Mesters, Wolfgang E. Berdel, Georg Lenz, Matthias Stelljes
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-017-14400-1

UPS-indel: a Universal Positioning System for Indels
Cited by: 6
Author(s): Mohammad Shabbir Hasan, Xiaowei Wu, Layne T. Watson, Liqing Zhang
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13195-021-00871-y

Short leukocyte telomeres predict 25-year Alzheimer's disease incidence in non-APOE ε4-carriers
Cited by: 17
Author(s): Fernanda Schäfer Hackenhaar, Maria Josefsson, Annelie Nordin Adolfsson, Mattias Landfors, Karolina Kauppi, Magnus Hultdin, Rolf Adolfsson, Sofie Degerman, Sara Pudas
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0242334

Predicting time to graduation at a large enrollment American university
Cited by: 6
Author(s): John M. Aiken, Riccardo De Bin, M. Hjorth‐Jensen, Marcos D. Caballero
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-02366-w

Multiomic analysis of Schistosoma mansoni reveals unique expression profiles in cercarial heads and tails
Cited by: 1
Author(s): James R Hagerty, Hyung Chul Kim, Emmitt R. Jolly
Software Mentions: 4
Published: about 5 years ago

10.1007/s10822-021-00405-6

Multitask machine learning models for predicting lipophilicity (logP) in the SAMPL7 challenge
Cited by: 9
Author(s): Eelke B. Lenselink, Pieter F. W. Stouten
Software Mentions: 4
Published: about 5 years ago

10.1111/ele.13251

A 7000‐year history of changing plant trait composition in an Amazonian landscape; the role of humans and climate
Cited by: 28
Author(s): Masha T. van der Sande, William D. Gosling, Alexander Correa‐Metrio, Jamir Prado-Júnior, Lourens Poorter, Rafael S. Oliveira, Lucas Mazzei, Mark B. Bush
Software Mentions: 4
Published: over 7 years ago

10.1186/s12859-017-1554-7

SFREEMAP - A simulation-free tool for stochastic mapping
Cited by: 3
Author(s): Diego Pasqualin, Marcos S. Barbeitos, Fabiano Silva
Software Mentions: 4
Published: over 9 years ago

10.3389/fonc.2020.573318

PHF20 Promotes Glioblastoma Cell Malignancies Through a WISP1/BGN-Dependent Pathway
Cited by: 6
Author(s): Qianquan Ma, Wenyong Long, Changsheng Xing, Chongming Jiang, Jun Su, Helen Y. Wang, Qing Liu, Rong Fu Wang
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.05224

Social networks predict gut microbiome composition in wild baboons
Cited by: 384
Author(s): Jenny Tung, Luis B. Barreiro, Michael B. Burns, Jean Grenier, Joshua Lynch, Laura Grieneisen, Jeanne Altmann, Susan C. Alberts, Ran Blekhman, Elizabeth A. Archie
Software Mentions: 4
Published: over 11 years ago

10.7717/peerj.11724

Genomics pipelines to investigate susceptibility in whole genome and exome sequenced data for variant discovery, annotation, prediction and genotyping
Cited by: 11
Author(s): Zeeshan Ahmed, Eduard Gibert Renart, Saman Zeeshan
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008230

Patients infected with Mycobacterium africanum versus Mycobacterium tuberculosis possess distinct intestinal microbiota
Cited by: 12
Author(s): Sivaranjani Namasivayam, Bassirou Diarra, Seydou Diabaté, Yeya dit Sadio Sarro, A. Koné, Bourahima Kone, Mohamed Tolofoudié, Bocar Baya, M L Diakité, Ousmane Kodio, Keira A. Cohen, Jane L. Holl, Chad Achenbach, S. Chatterjee, Robert L. Murphy, William R. Bishai, Souleymane Diallo, Alan Sher, Mamoudou Maiga
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pbio.3000123

Structural basis of DSF recognition by its receptor RpfR and its regulatory interaction with the DSF synthase RpfF
Cited by: 22
Author(s): E.J. Waldron, Donald R. Snyder, Nicolas L. Fernandez, Emily Sileo, Daigo Inoyama, Joel S. Freundlich, Christopher M. Waters, Vaughn S. Cooper, Matthew B. Neiditch
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1005991

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems
Cited by: 280
Author(s): Ahmadreza Ghaffarizadeh, Randy Heiland, Samuel H. Friedman, Shannon M. Mumenthaler, Paul Macklin
Software Mentions: 4
Published: over 8 years ago

10.1002/1878-0261.12692

DAPK3 participates in the mRNA processing of immediate early genes in chronic lymphocytic leukaemia
Cited by: 2
Author(s): Fraser Thomas, Katie Holmes, Sarah Kreuz, Peter Hillmen, Pascal Lefèvre
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1005822

Regulation of Stem Cell Proliferation and Cell Fate Specification by Wingless/Wnt Signaling Gradients Enriched at Adult Intestinal Compartment Boundaries
Cited by: 64
Author(s): Ai Tian, Hassina Benchabane, Zhenghan Wang, Yashi Ahmed
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0155461

SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing Data
Cited by: 69
Author(s): José Manuel Abuín, Juan C. Pichel, Tomás F. Pena, Jorge Amigo
Software Mentions: 4
Published: about 10 years ago

10.1186/gb-2008-9-1-r7

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Cited by: 2,092
Author(s): Brian J. Haas, Steven L. Salzberg, Wei Zhu, Mihaela Pertea, Jonathan Allen, Joshua Orvis, Owen White, C. Robin Buell, Jennifer Wortman
Software Mentions: 4
Published: over 18 years ago

10.1186/gb-2008-9-1-r11

CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships
Cited by: 36
Author(s): Wei-Cheng Lo, Ping Lyu
Software Mentions: 4
Published: over 18 years ago

10.1007/s10822-020-00329-7

Flexi-pharma: a molecule-ranking strategy for virtual screening using pharmacophores from ligand-free conformational ensembles
Cited by: 9
Author(s): Isaías Lans, Karen Palacio-Rodríguez, Claudio N. Cavasotto, Pilar Cossio
Software Mentions: 4
Published: about 6 years ago

10.3390/microorganisms8111679

Comparative Genomics of Pathogenic Clavibacter michiganensis subsp. michiganensis Strains from Chile Reveals Potential Virulence Features for Tomato Plants
Cited by: 13
Author(s): Valentina Méndez, Matías A. Valenzuela, Francisco Salvà‐Serra, Daniel Jaén‐Luchoro, Ximena Besoaín, Edward R. B. Moore, Michael Seeger
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.3000153

Time-dependent Pax3-mediated chromatin remodeling and cooperation with Six4 and Tead2 specify the skeletal myogenic lineage in developing mesoderm
Cited by: 17
Author(s): Alessandro Magli, June Baik, Lauren J. Mills, Il-Youp Kwak, Bridget S. Dillon, Ricardo Mondragón-González, David Stafford, Scott Swanson, Ron Stewart, James A. Thomson, Daniel J. Garry, Brian David Dynlacht, Rita C.R. Perlingeiro
Software Mentions: 4
Published: over 7 years ago

10.1128/mBio.01408-18

Heterosubtypic Protections against Human-Infecting Avian Influenza Viruses Correlate to Biased Cross-T-Cell Responses
Cited by: 23
Author(s): Min Zhao, Kefang Liu, Jiejian Luo, Shuguang Tan, Chuansong Quan, Shuijun Zhang, Yan Chai, Jianxun Qi, Yan Li, Yang Bi, Haixia Xiao, Gary Wong, Jianfang Zhou, Taijiao Jiang, Wenjun Liu, Hongjie Yu, Jinghua Yan, Yingxia Liu, Yuelong Shu, Guizhen Wu, Aiping Wu, George F. Gao, William J. Liu
Software Mentions: 4
Published: almost 8 years ago

10.3390/s17050977

Distributed Data Service for Data Management in Internet of Things Middleware
Cited by: 30
Author(s): Ruben Cruz Huacarpuma, Rafael T. de Sousa, Maristela Holanda, Robson de Oliveira Albuquerque, Luis Javier García Villalba, Tai-hoon Kim
Software Mentions: 4
Published: about 9 years ago

10.7554/eLife.62865

Developmental hourglass and heterochronic shifts in fin and limb development
Cited by: 7
Author(s): Koh Onimaru, Kaori Tatsumi, Chiharu Tanegashima, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0127798

Olive Fruit Fly (Bactrocera oleae) Population Dynamics in the Eastern Mediterranean: Influence of Exogenous Uncertainty on a Monophagous Frugivorous Insect
Cited by: 30
Author(s): Mariano Ordano, Izhar Engelhard, Polychronis Rempoulakis, Esther Nemny-Lavy, Moshe Blum, Sami Yasin, Itamar M. Lensky, Nikos T. Papadopoulos, David Nestel
Software Mentions: 4
Published: about 11 years ago

10.1111/1755-0998.13044

Rapid identification and interpretation of gene–environment associations using the new R.SamBada landscape genomics pipeline
Cited by: 15
Author(s): Solange Duruz, Natalia Sevane, Oliver Selmoni, Elia Vajana, Kevin Leempoel, Sylvie Stucki, Pablo Orozco‐terWengel, Estelle Rochat, S. Dunner, Michael William Bruford, Stéphane Joost
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.6826

Are native and non‐native pollinator friendly plants equally valuable for native wild bee communities?
Cited by: 31
Author(s): Nicola Seitz, Dennis vanEngelsdorp, Sara D. Leonhardt
Software Mentions: 4
Published: almost 6 years ago

10.1523/ENEURO.0237-16.2016

Circadian Forced Desynchrony of the Master Clock Leads to Phenotypic Manifestation of Depression in Rats
Cited by: 41
Author(s): Miriam Ben-Hamo, Tracy A. Larson, Leanne S. Duge, Carl Sikkema, Charles W. Wilkinson, Horacio O. de la Iglesia, Mónica M. C. González
Software Mentions: 4
Published: over 9 years ago

10.1107/S139900471400087X

Anomalies in the refinement of isoleucine
Cited by: 3
Author(s): Karen R. M. Berntsen, Gert Vriend
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0242677

Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats
Cited by: 16
Author(s): Sara Sajko, Irina Grishkovskaya, Július Košťan, Melissa A. Graewert, Kim Setiawan, Linda Trübestein, Korbinian Niedermüller, Charlotte Gehin, Antonio Sponga, Martin Puchinger, Anne‐Claude Gavin, Thomas A. Leonard, D. I. Svergun, Terry Smith, Brooke Morriswood, Kristina Djinović-Carugo
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008919

Detecting adherence to the recommended childhood vaccination schedule from user-generated content in a US parenting forum
Cited by: 5
Author(s): Lorenzo Betti, Gianmarco De Francisci Morales, Laetitia Gauvin, Kyriaki Kalimeri, Yelena Mejova, Daniela Paolotti, Michele Starnini
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01713

Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential
Cited by: 20
Author(s): Eduardo L. Almeida, Andrés Felipe Carrillo Rincón, Stephen A. Jackson, Alan D. W. Dobson
Software Mentions: 4
Published: about 7 years ago

10.1186/s13059-019-1757-5

Multilayered control of exon acquisition permits the emergence of novel forms of regulatory control
Cited by: 14
Author(s): Nesli Avgan, Juli I. Wang, Javier Fernández-Chamorro, Robert J. Weatheritt
Software Mentions: 4
Published: about 7 years ago

10.1007/s00415-014-7343-6

Cervical dystonia and pain: characteristics and treatment patterns from CD PROBE (Cervical Dystonia Patient Registry for Observation of OnabotulinumtoxinA Efficacy)
Cited by: 59
Author(s): P. David Charles, Charles H. Adler, Mark Stacy, Cynthia L. Comella, Joseph Jankovic, Aubrey Manack Adams, Marc Schwartz, Mitchell F. Brin
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pgen.1009512

The actin nucleation factors JMY and WHAMM enable a rapid Arp2/3 complex-mediated intrinsic pathway of apoptosis
Cited by: 11
Author(s): Virginia L King, Nathan K. Leclair, Alyssa Coulter, Kenneth Campellone
Software Mentions: 4
Published: over 5 years ago

10.1093/database/baz051

GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer
Cited by: 3
Author(s): Ying Wang, Yueqian Wang, Shuangkuai Wang, Yuantao Tong, Ling Jin, Hui Zong, Rongbin Zheng, Jiancheng Yang, Zeyu Zhang, En Ouyang, Min Zhou, Xiaoyan Zhang
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1003480

GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans
Cited by: 9
Author(s): Oscar Lao, Fan Liu, Andreas Wollstein, Manfred Kayser
Software Mentions: 4
Published: over 12 years ago

10.1038/s41396-018-0314-7

Bridging reproductive and microbial ecology: a case study in arbuscular mycorrhizal fungi
Cited by: 38
Author(s): Carlos A. Aguilar‐Trigueros, Stefan Hempel, Jeff R. Powell, William K. Cornwell, Matthias C. Rillig
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2021.648026

Clarifying Recent Adaptive Diversification of the Chrysanthemum-Group on the Basis of an Updated Multilocus Phylogeny of Subtribe Artemisiinae (Asteraceae: Anthemideae)
Cited by: 10
Author(s): Chen Shen, Chujie Zhang, Jie Chen, Yanping Guo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0101239

Visualizing Molecular Profiles of Glioblastoma with GBM-BioDP
Cited by: 49
Author(s): Orieta Celiku, Seth Johnson, Shuping Zhao, Kevin Camphausen, Uma Shankavaram
Software Mentions: 4
Published: about 12 years ago

10.3389/fmicb.2020.01491

Thinning Partially Mitigates the Impact of Atlantic Forest Replacement by Pine Monocultures on the Soil Microbiome
Cited by: 13
Author(s): Carolina Paola Trentini, Paula I. Campanello, Mariana Villagra, Julian A. Ferreras, Martin Hartmann
Software Mentions: 4
Published: about 6 years ago

10.3390/s130708060

Context Management Platform for Tourism Applications
Cited by: 14
Author(s): David Buján, David L. Martin, Ortzi Torices, Diego López-de-Ipiña, Carlos Lamsfus, Joseba Abaitua, Aurkene Alzua-Sorzabal
Software Mentions: 4
Published: about 13 years ago

10.1093/gigascience/giz060

BSA4Yeast: Web-based quantitative trait locus linkage analysis and bulk segregant analysis of yeast sequencing data
Cited by: 3
Author(s): Zhang Zhi, Paul P. Jung, Valentin Grouès, Patrick May, Carole L. Linster, Enrico Glaab
Software Mentions: 4
Published: about 7 years ago

10.1155/2013/182145

Large-Scale Modeling of Epileptic Seizures: Scaling Properties of Two Parallel Neuronal Network Simulation Algorithms
Cited by: 5
Author(s): Lorenzo L. Pesce, Hyong C. Lee, Mark Hereld, Sid Visser, Rick Stevens, Albert Wildeman, Wim van Drongelen
Software Mentions: 4
Published: over 13 years ago

10.7717/peerj.9139

Drivers of beta diversity in modern and ancient reef-associated soft-bottom environments
Cited by: 5
Author(s): Vanessa Julie Roden, Martin Zuschin, Alexander Nützel, Imelda M. Hausmann, Wolfgang Kiessling
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1008689

Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography
Cited by: 27
Author(s): Viktor Sip, Meysam Hashemi, Anirudh Nihalani Vattikonda, Michael Woodman, Huifang Wang, Julia Scholly, Samuel Médina Villalon, Maxime Guye, Fabricē Bartolomei, Viktor K. Jirsa
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-020-06926-y

Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data
Cited by: 17
Author(s): Ewelina Pośpiech, Magdalena Kukla-Bartoszek, Joanna Karłowska-Pik, Piotr Zieliński, Anna Woźniak, Michał Boroń, Michał Dąbrowski, Magdalena Zubańska, Agata Jarosz, Tomasz Grzybowski, Rafał Płoski, Magdalena Spólnicka, Wojciech Branicki
Software Mentions: 4
Published: almost 6 years ago

10.3390/s20113166

A Distributed Stream Processing Middleware Framework for Real-Time Analysis of Heterogeneous Data on Big Data Platform: Case of Environmental Monitoring
Cited by: 15
Author(s): Adeyinka K. Akanbi, Muthoni Masinde
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1007087

Comprehensive molecular profiling of 718 Multiple Myelomas reveals significant differences in mutation frequencies between African and European descent cases
Cited by: 64
Author(s): Zarko Manojlovic, Austin Christofferson, Winnie S. Liang, Jessica Aldrich, Megan Washington, Shukmei Wong, Daniel C. Rohrer, Scott D. Jewell, Rick A. Kittles, Mary DeRome, Daniel Auclair, David W. Craig, Jonathan J. Keats, John D. Carpten
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pgen.1003959

Low Frequency Variants, Collapsed Based on Biological Knowledge, Uncover Complexity of Population Stratification in 1000 Genomes Project Data
Cited by: 31
Author(s): Carrie Moore, John R. Wallace, Daniel Wolfe, Alex T. Frase, Sarah A. Pendergrass, Kenneth M. Weiss, Marylyn D. Ritchie
Software Mentions: 4
Published: over 12 years ago

10.1038/s41598-020-67666-3

Finding hotspots: development of an adaptive spatial sampling approach
Cited by: 18
Author(s): Ricardo Andrade‐Pacheco, Francois Rerolle, Jean Frantz Lemoine, Leda Hernandez, Aboulaye Meïté, Lazarus Juziwelo, Aurélien F. Bibaut, Mark J. van der Laan, Benjamin F. Arnold, Hugh J. W. Sturrock
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.46922

Large, three-generation human families reveal post-zygotic mosaicism and variability in germline mutation accumulation
Cited by: 99
Author(s): Thomas A Sasani, Brent S. Pedersen, Ziyue Gao, Lisa Baird, Molly Przeworski, Lynn B. Jorde, Aaron R. Quinlan
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2019.02683

Differential Expression of Signaling Pathway Genes Associated With Aflatoxin Reduction Quantitative Trait Loci in Maize (Zea mays L.)
Cited by: 6
Author(s): Felicia Parish, W. Paul Williams, Gary L. Windham, Xueyan Shan
Software Mentions: 4
Published: over 6 years ago

10.1093/gigascience/giaa158

ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data
Cited by: 4
Author(s): Pavankumar Videm, Anup Kumar, Oleg Zharkov, Björn Grüning, Rolf Backofen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0003614

Ecological and Sociodemographic Determinants of House Infestation by Triatoma infestans in Indigenous Communities of the Argentine Chaco
Cited by: 37
Author(s): María Sol Gaspe, Yael Mariana Provecho, Marta Victoria Cardinal, María del Pilar Fernández, Ricardo E. Gürtler
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-017-00650-6

Microbial Functional Capacity Is Preserved Within Engineered Soil Formulations Used In Mine Site Restoration
Cited by: 34
Author(s): Deepak Kumaresan, Adam T. Cross, Benjamin Moreira‐Grez, Khalil Kariman, Paul Nevill, Jason C. Stevens, Richard J. N. Allcock, Anthony G. O'Donnell, Kingsley W. Dixon, Andrew S. Whiteley
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.1838

Squares of different sizes: effect of geographical projection on model parameter estimates in species distribution modeling
Cited by: 14
Author(s): Lara Budic, Gregor Didenko, Carsten F. Dormann
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0256729

Sociodemographic risk factors of under-five stunting in Bangladesh: Assessing the role of interactions using a machine learning method
Cited by: 4
Author(s): Mohaimen Mansur, Awan Afiaz, Md. Saddam Hossain
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.4705

DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
Cited by: 149
Author(s): Owen S. Wangensteen, Creu Palacín, Magdalena Guardiola, Xavier Turon
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.7237

Occurrence data uncover patterns of allopatric divergence and interspecies interactions in the evolutionary history of <i>Sceloporus</i> lizards
Cited by: 6
Author(s): Julio A. Rivera, Heather N. Rich, A. Michelle Lawing, Michael S. Rosenberg, Emilı́a P. Martins
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.1002512

Spatial Embedding and Wiring Cost Constrain the Functional Layout of the Cortical Network of Rodents and Primates
Cited by: 160
Author(s): Szabolcs Horvát, Răzvan Gămănuţ, Mária Ercsey-Ravasz, Loïc Magrou, Bianca Gămănuț, David C. Van Essen, Andreas Burkhalter, Kenneth Knoblauch, Zoltán Toroczkai, Henry Kennedy
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0199902

Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome
Cited by: 8
Author(s): Tina Ilc, Gautier Arista, Raquel Tavares, Nicolas Navrot, Éric Duchêne, Amandine Velt, Frédéric Choulet, Etienne Paux, Marc Fischer, David R. Nelson, Philippe Hugueney, Danièle Werck‐Reichhart, Camille Rustenholz
Software Mentions: 4
Published: about 8 years ago

10.3390/jof7030194

The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense
Cited by: 23
Author(s): Carmen Gómez-Lama Cabanás, Antonio José Fernández-González, Martina Cardoni, Antonio Valverde-Corredor, Javier López-Cepero Borrego, Manuel Fernández‐López, Jesús Mercado‐Blanco
Software Mentions: 4
Published: over 5 years ago

10.1098/rsos.160607

Effects of 25 mg oxazepam on emotional mimicry and empathy for pain: a randomized controlled experiment
Cited by: 6
Author(s): Gustav Nilsonne, Sandra Tamm, Armita Golkar, Karolina Sörman, Katarina Howner, Marianne Kristiansson, Andreas Olsson, Martin Ingvar, Predrag Petrović
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0134250

Short-Term Space-Use Patterns of Translocated Mojave Desert Tortoise in Southern California
Cited by: 20
Author(s): Matthew L. Farnsworth, Brett G. Dickson, Luke J. Zachmann, Ericka E. Hegeman, Amanda R. Cangelosi, T. G. Jackson, Amanda F. Scheib
Software Mentions: 4
Published: almost 11 years ago

10.1186/1752-153X-2-5

Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit
Cited by: 297
Author(s): Noel M. O’Boyle, Chris Morley, Geoffrey Hutchison
Software Mentions: 4
Published: over 18 years ago

10.1371/journal.pone.0235741

Changes in infant non-nutritive sucking throughout a suck sample at 3-months of age
Cited by: 6
Author(s): Emily Zimmerman, Thomas Carpenito, Alaina Martens
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1003829

eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models
Cited by: 26
Author(s): Michał Bryliński
Software Mentions: 4
Published: almost 12 years ago

10.1007/s41019-021-00165-1

Predicting Geolocation of Tweets: Using Combination of CNN and BiLSTM
Cited by: 18
Author(s): Rhea Mahajan, Vibhakar Mansotra
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-39142-0

Unlocking HDR-mediated nucleotide editing by identifying high-efficiency target sites using machine learning
Cited by: 30
Author(s): Aidan O’Brien, Laurence O.W. Wilson, Gaétan Burgio, Denis C. Bauer
Software Mentions: 4
Published: over 7 years ago

10.1515/jib-2020-0005

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
Cited by: 17
Author(s): Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik Sheriff, David Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
Software Mentions: 4
Published: about 6 years ago

10.3390/s21113773

SDN-Based Network Slicing Mechanism for a Scalable 4G/5G Core Network: A Kubernetes Approach
Cited by: 16
Author(s): Robert Botez, José Costa-Requena, Iustin-Alexandru Ivanciu, Vlad Strautiu, Virgil Dobrota
Software Mentions: 4
Published: about 5 years ago

10.1093/gigascience/giy125

A benchmark study of k-mer counting methods for high-throughput sequencing
Cited by: 43
Author(s): Swati Manekar, S. R. Sathe
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pntd.0007919

Polymorphism analyses and protein modelling inform on functional specialization of Piwi clade genes in the arboviral vector Aedes albopictus
Cited by: 16
Author(s): Michele Marconcini, Luis Miguel Hernández, Giuseppe Iovino, Vincent Houé, Federica Valerio, Umberto Palatini, Elisa Pischedda, Jacob E. Crawford, Bradley J. White, Teresa Lin, Rebeca Carballar-Lejarazú, Lino Ometto, Federico Forneris, Anna‐Bella Failloux, Mariangela Bonizzoni
Software Mentions: 4
Published: over 6 years ago

10.1128/mBio.02262-18

Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role
Cited by: 13
Author(s): Jolene R. Bowers, Michael Valentine, Veronica Harrison, Viacheslav Y. Fofanov, John D. Gillece, Josie Delisle, Bethany K. Patton, James M. Schupp, Krystal Sheridan, Darrin Lemmer, Scott Ostdiek, Harlori K. Bains, Jennifer Heim, Tammy Sylvester, Siru Prasai, Melissa Kretschmer, Nicole Fowle, Kenneth Komatsu, Shane Brady, Susan Robinson, Kathryn Fitzpatrick, Gholamabbas Amin Ostovar, Eric Alsop, Elizabeth Hutchins, Kendall Jensen, Paul Keim, David M. Engelthaler
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.ppat.1009461

Deconvolution of intergenic polymorphisms determining high expression of Factor H binding protein in meningococcus and their association with invasive disease
Cited by: 4
Author(s): Marco Spinsanti, Tarcisio Brignoli, Margherita Bodini, Lucia Eleonora Fontana, Matteo De Chiara, Alessia Biolchi, Alessandro Muzzi, Vincenzo Scarlato, Isabel Delany
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.628437

Volatile Compounds From Bacillus, Serratia, and Pseudomonas Promote Growth and Alter the Transcriptional Landscape of Solanum tuberosum in a Passively Ventilated Growth System
Cited by: 8
Author(s): Darren Heenan-Daly, Simone Coughlan, Eileen Dillane, Barbara Doyle Prestwich
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.583053

Identification of Key Genes in Purine Metabolism as Prognostic Biomarker for Hepatocellular Carcinoma
Cited by: 14
Author(s): Wenjing Su, Peizhi Lu, Yong Wu, K. P. Kannan, Chengkun Yang, Guo‐Dong Lu
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.9535

Alterations of androgen receptor-regulated enhancer RNAs (eRNAs) contribute to enzalutamide resistance in castration-resistant prostate cancer
Cited by: 35
Author(s): Jingwen Zhao, Yu Zhao, Liguo Wang, Jun Zhang, Jeffrey Karnes, Manish Kohli, Guixia Wang, Haojie Huang
Software Mentions: 4
Published: about 10 years ago

10.1038/sdata.2017.127

Machine-learned and codified synthesis parameters of oxide materials
Cited by: 118
Author(s): Edward Kim, Kevin Huang, Alex Tomala, Sara Matthews, Emma Strubell, Adam Saunders, Andrew McCallum, Elsa Olivetti
Software Mentions: 4
Published: almost 9 years ago

10.3390/microorganisms7100475

Low Temperature (15 °C) Reduces Bacterial Diversity and Prolongs the Preservation Time of Volvariella volvacea
Cited by: 6
Author(s): Xiuling Wang, Shunjie Liu, Mingjie Chen, Changxia Yu, Yan Zhao, Haiyan Yang, Zhe Li, Zhengpeng Li
Software Mentions: 4
Published: almost 7 years ago

10.18632/oncotarget.24468

Artificial neural network approach to predict surgical site infection after free-flap reconstruction in patients receiving surgery for head and neck cancer
Cited by: 31
Author(s): Pao‐Jen Kuo, Shao-Chun Wu, Peng‐Chen Chien, Shu-Shya Chang, Cheng-Shyuan Rau, Hsueh-Ling Tai, Shu-Hui Peng, Yi-Chien Lin, Yi‐Chun Chen, Hsiao-Yun Hsieh, Ching‐Hua Hsieh
Software Mentions: 4
Published: over 8 years ago

10.1186/s12862-019-1392-5

Population genomics of rapid evolution in natural populations: polygenic selection in response to power station thermal effluents
Cited by: 59
Author(s): David I. Dayan, Xiao Du, Tara Zeynep Baris, Dominique Wagner, Douglas L. Crawford, Marjorie F. Oleksiak
Software Mentions: 4
Published: over 7 years ago