Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00495-20

https://doi.org/10.1128/mSystems.00495-20

The Stringent Stress Response Controls Proteases and Global Regulators under Optimal Growth Conditions in Pseudomonas aeruginosa

Cited by: 21
Author(s): Daniel Pletzer, Travis M. Blimkie, Heidi Wolfmeier, Yicong Li, Arjun Baghela, Ahwon Lee, Reza Falsafi, Robert E. W. Hancock
Published: about 4 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GOfuncR
Gene ontology enrichment using FUNC
Papers that mentioned: 6
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071