10.1186/s12862-019-1523-z
Ancient events and climate adaptive capacity shaped distinct chloroplast genetic structure in the oak lineagesCited by: 12
Author(s): Mengxiao Yan, Ruibin Liu, Ying Liu, Andrew L. Hipp, Min Deng, Yanshi Xiong
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-021-86536-0
Modular genome-wide gene expression architecture shared by early traits of osteoporosis and atherosclerosis in the Young Finns StudyCited by: 6
Author(s): Binisha H. Mishra, Pashupati P. Mishra, Emma Raitoharju, Saara Marttila, Nina Mononen, Harri Sievänen, Jorma Viikari, Markus Juonala, Marika Laaksonen, Nina Hutri‐Kähönen, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0180630
Nasopharyngeal microbiota in infants and changes during viral upper respiratory tract infection and acute otitis mediaCited by: 76
Author(s): Tasnee Chonmaitree, Kristofer Jennings, George Golovko, Kamil Khanipov, Maria Pimenova, Janak A. Patel, David P. McCormick, Michael J. Loeffelholz, Yuriy Fofanov
Software Mentions: 4
Published: about 9 years ago
10.7554/eLife.65381
Evidence for additive and synergistic action of mammalian enhancers during cell fate determinationCited by: 53
Author(s): Jinmi Choi, Kseniia Lysakovskaia, Grégoire Stik, Carina Demel, Johannes Söding, Tian V. Tian, Thomas Graf, Patrick Cramer
Software Mentions: 4
Published: over 5 years ago
10.1186/s40168-019-0724-4
Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflightCited by: 65
Author(s): Peng Jiang, Stefan J. Green, George E. Chlipala, Fred W. Turek, Martha Hotz Vitaterna
Software Mentions: 4
Published: almost 7 years ago
10.1186/s12864-019-6397-3
Host plant adaptation in the polyphagous whitefly, Trialeurodes vaporariorum, is associated with transcriptional plasticity and altered sensitivity to insecticidesCited by: 25
Author(s): Adam Pym, Kumar Saurabh Singh, A. Nordgren, T.G. Emyr Davies, Christoph Zimmer, Jan Eliáš, Russell Slater, Chris Bass
Software Mentions: 4
Published: over 6 years ago
10.3390/genes12020227
Phenotypic Response to Light Versus Shade Associated with DNA Methylation Changes in Snapdragon Plants (Antirrhinum majus)Cited by: 4
Author(s): Pierick Mouginot, Nelia Luviano Aparicio, Delphine Gourcilleau, Mathieu Latutrie, Sara Marin, Jean‐Louis Hemptinne, Christoph Grunau, Benoît Pujol
Software Mentions: 4
Published: over 5 years ago
10.3389/fgene.2019.00697
Cross-Species Gene Expression Analysis Reveals Gene Modules Implicated in Human OsteosarcomaCited by: 12
Author(s): Zheng Jin, Shanshan Liu, Pei‐Wen Zhu, Mengyan Tang, Yuanxin Wang, Yuan Tian, Li Dong, X. D. Zhu, Dongmei Yan, Zhifeng Zhu
Software Mentions: 4
Published: almost 7 years ago
10.1136/openhrt-2018-000915
Lamin mutation location predicts cardiac phenotype severity: combined analysis of the published literatureCited by: 14
Author(s): Gabriella Captur, Eloisa Arbustini, Petros Syrris, Dina Radenković, Benjamin O’Brien, William J. McKenna, James Moon
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12864-021-07558-6
The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae)Cited by: 5
Author(s): Huai‐Jun Xue, Yiwei Niu, Kari A. Segraves, Rui Nie, Ya Jing Hao, Li Li Zhang, Xin Cheng, Xuewen Zhang, Wen Zhu Li, Run Sheng Chen, Xing Yang
Software Mentions: 4
Published: over 5 years ago
10.3389/fpsyg.2021.716164
Harnessing the Fifth Element of Distributional Statistics for Psychological Science: A Practical Primer and Shiny App for Measures of Statistical Inequality and ConcentrationCited by: 1
Author(s): Ulrich S. Tran, Taric Lallai, Marton L. Gyimesi, Josef Baliko, Dariga Ramazanova, Martin Voracek
Software Mentions: 4
Published: almost 5 years ago
10.3389/fmicb.2018.00809
Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community StructureCited by: 12
Author(s): Rachel Kaminsky, Sergio E. Morales
Software Mentions: 4
Published: about 8 years ago
10.3389/fgene.2021.634171
Weighted Gene Co-expression Network Analysis Reveals Different Immunity but Shared Renal Pathology Between IgA Nephropathy and Lupus NephritisCited by: 6
Author(s): Niya Jia, Xing-Zi Liu, Zhao Zhang, Hong Zhang
Software Mentions: 4
Published: over 5 years ago
10.3389/fphar.2021.708050
A Comparison of Nine Machine Learning Mutagenicity Models and Their Application for Predicting Pyrrolizidine AlkaloidsCited by: 5
Author(s): Christoph Helma, Verena Schöning, Jürgen Drewe, Philipp Boss
Software Mentions: 4
Published: about 5 years ago
10.3906/biy-2005-115
Integration of transcriptomic profile of SARS-CoV-2 infected normal human bronchial epi-thelial cells with metabolic and protein-protein interaction networksCited by: 8
Author(s): Hamza Umut Karakurt, Pınar Pir
Software Mentions: 4
Published: about 6 years ago
10.1186/1471-2105-12-292
Unraveling gene regulatory networks from time-resolved gene expression data -- a measures comparison studyCited by: 43
Author(s): Sabrina Hempel, Aneta Koseska, Zoran Nikoloski, Jürgen Kurths
Software Mentions: 4
Published: about 15 years ago
10.18632/oncotarget.22947
Spatial habitats from multiparametric MR imaging are associated with signaling pathway activities and survival in glioblastomaCited by: 19
Author(s): Katherine Dextraze, Abhijoy Saha, Donnie Kim, Shivali Narang, Michael Lehrer, Aroor R. Rao, Saphal Narang, Dinesh Rao, Salmaan Ahmed, Venkatesh S Madhugiri, Clifton D. Fuller, Michelle M. Kim, Sunil Krishnan, Ganesh Rao, Arvind Rao
Software Mentions: 4
Published: over 8 years ago
10.1186/s12983-021-00391-3
Polymorphism of winter phenotype in Siberian hamster: consecutive litters do not differ in photoresponsiveness but prolonged acclimation to long photoperiod inhibits winter moltCited by: 4
Author(s): Anna S. Przybylska-Piech, Michał S. Wojciechowski, Małgorzata Jefimow
Software Mentions: 4
Published: over 5 years ago
10.3389/fgene.2021.745277
Chromobox Homolog 8 (CBX8) in Human Tumor Carcinogenesis and Prognosis: A Pancancer Analysis Using Multiple DatabasesCited by: 4
Author(s): Dongjie Shi, Lei Ao, Hua Yu, Yongzhi Xia, Juan Li, Wenjie Zhong, Haijian Xia
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pone.0222764
Model-based QTL detection is sensitive to slight modifications in model formulationCited by: 3
Author(s): Caterina Barrasso, Mohamed-Mahmoud Memah, Michel Génard, Bénédicte Quilot-Turion
Software Mentions: 4
Published: almost 7 years ago
10.1186/s13059-018-1575-1
VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studiesCited by: 92
Author(s): Mengjie Chen, Xiang Zhou
Software Mentions: 4
Published: over 7 years ago
10.3390/ijms22041661
Genome-Wide Identification and Expression Analysis of OsbZIP09 Target Genes in Rice Reveal Its Mechanism of Controlling Seed GerminationCited by: 9
Author(s): Chen Zhu, Chu-Xin Wang, Chen-Ya Lu, Jin-Dong Wang, Yu Zhou, Min Xiong, Changquan Zhang, Qiaoquan Liu
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-021-07902-w
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the BotryosphaeriaceaeCited by: 16
Author(s): Jan Hendrik Nagel, Michael J. Wingfield, Bernard Slippers
Software Mentions: 4
Published: almost 5 years ago
10.3390/microorganisms9071495
Resilience of Microbial Communities after Hydrogen Peroxide Treatment of a Eutrophic Lake to Suppress Harmful Cyanobacterial BloomsCited by: 15
Author(s): Tim Piel, Giovanni Sandrini, Gerard Muyzer, Corina P. D. Brussaard, Pieter C. Slot, Maria J. van Herk, Jef Huisman, P. Visser
Software Mentions: 4
Published: about 5 years ago
10.3389/fcell.2021.688855
Transcriptomics Profiling Identifies Cisplatin-Inducible Death Receptor 5 Antisense Long Non-coding RNA as a Modulator of Proliferation and Metastasis in HeLa CellsCited by: 7
Author(s): Dilek Cansu Gürer, İpek Erdoğan, Ulvi Ahmadov, Merve Başol, Osama Sweef, Gulcin Cakan-Akdogan, Bünyamin Akgül
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12864-015-1624-z
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogensCited by: 132
Author(s): Abraham Morales‐Cruz, Katherine C. H. Amrine, Bárbara Blanco-Ulate, Daniel P. Lawrence, Renaud Travadon, Philippe E. Rolshausen, Kendra Baumgartner, Dario Cantu
Software Mentions: 4
Published: about 11 years ago
10.3390/ijerph17031111
Short-Term Associations of Fine Particulate Matter and Synoptic Weather Types with Cardiovascular Mortality: An Ecological Time-Series Study in Shanghai, ChinaCited by: 11
Author(s): Tian Qing, Mei Li, Scott Montgomery, Bo Fang, Chunfang Wang, Tian Xia, Yang Cao
Software Mentions: 4
Published: over 6 years ago
10.1042/BSR20203812
An autophagy-related prognostic signature associated with immune microenvironment features of uveal melanomaCited by: 8
Author(s): Zhuotao Zheng, Lingyue Zhang, Zewei Tu, Yan Deng, Xingtian Yin
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0047107
Cross-Species Genome Wide Expression Analysis during Pluripotent Cell Determination in Mouse and Rat Preimplantation EmbryosCited by: 12
Author(s): Elisa A. Casanova, Michał Okoniewski, Paolo Cinelli
Software Mentions: 4
Published: almost 14 years ago
10.1016/j.envsoft.2018.02.011
Modelling background air pollution exposure in urban environments: Implications for epidemiological researchCited by: 27
Author(s): Álvaro Gómez-Losada, José C.M. Pires, Rafael Pino‐Mejías
Software Mentions: 4
Published: almost 8 years ago
10.1186/1471-2164-15-549
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new speciesCited by: 239
Author(s): Cene Gostinčar, Robin A. Ohm, Tina Kogej, Silva Sonjak, Monika Turk, Janja Zajc, Polona Zalar, Martín Grube, Hui Sun, James Han, Aarti Sharma, Jennifer Chiniquy, Chew Yee Ngan, Anna Lipzen, Kerrie Barry, Igor V. Grigoriev, Nina Gunde‐Cimerman
Software Mentions: 4
Published: over 12 years ago
10.1186/s12885-021-07930-5
The construction and validation of an RNA binding protein-related prognostic model for bladder cancerCited by: 17
Author(s): Fengxia Chen, Qingqing Wang, Youwen Zhou
Software Mentions: 4
Published: over 5 years ago
10.16966/2380-5536.170
Validity Study of the R-PLA, a Resilience Scale for People Living with HIVCited by: 1
Author(s): Jinxiang Hu, Julianne M. Serovich, Monique J. Brown, Judy A. Kimberly, Yi-Hsin Chen
Software Mentions: 4
Published: over 7 years ago
10.1186/s12864-019-5629-x
The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerataCited by: 82
Author(s): Daniele Armaleo, Olaf Müller, François Lutzoni, Ólafur S. Andrésson, Guillaume Blanc, Helge B. Bode, F. Collart, Francesco Dal Grande, Fred S. Dietrich, Igor V. Grigoriev, Suzanne Joneson, Alan Kuo, Peter E. Larsen, John M. Logsdon, David López, Francis Martin, Susan May, Tami McDonald, Sabeeha Merchant, Vivian Miao, Emmanuelle Morin, Ryoko Oono, Matteo Pellegrini, Nimrod D. Rubinstein, M. Virginia Sanchez‐Puerta, Elizabeth Savelkoul, Imke Schmitt, Jason C. Slot, Darren M. Soanes, Péter Szövényi, Nicholas J. Talbot, Claire Veneault‐Fourrey, Basil Britto Xavier
Software Mentions: 4
Published: almost 7 years ago
10.3389/fonc.2020.567931
A Ten-N6-Methyladenosine (m6A)-Modified Gene Signature Based on a Risk Score System Predicts Patient Prognosis in Rectum AdenocarcinomaCited by: 10
Author(s): Wei Huang, Gen Li, Zihang Wang, Lin Zhou, Xin Yin, Tianshu Yang, Pei Wang, Xu Teng, Yajuan Feng, Hefen Yu
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-018-2261-8
Benchmarking differential expression analysis tools for RNA-Seq: normalization-based vs. log-ratio transformation-based methodsCited by: 43
Author(s): Thomas P. Quinn, Tamsyn M. Crowley, Mark F. Richardson
Software Mentions: 4
Published: about 8 years ago
10.1111/1759-7714.13998
Prognostic value of ferroptosis‐related genes in patients with lung adenocarcinomaCited by: 10
Author(s): Guangsheng Zhu, Huang Hua, Songlin Xu, Ruifeng Shi, Zhouyong Gao, Xi Liu, Shuai Zhu, Ning Zhou, Lingling Zu, Ramon Andrade De Mello, Jun Chen, Song Xu
Software Mentions: 4
Published: about 5 years ago
10.1111/eva.13234
Association of putatively adaptive genetic variation with climatic variables differs between a parasite and its hostCited by: 5
Author(s): Sheree J. Walters, Todd Robinson, Margaret Byrne, Grant Wardell‐Johnson, Paul Nevill
Software Mentions: 4
Published: over 5 years ago
10.1002/evl3.184
The geographic mosaic of arms race coevolution is closely matched to prey population structureCited by: 19
Author(s): Michael T. J. Hague, Amber N. Stokes, Chris R. Feldman, Edmund D. Brodie
Software Mentions: 4
Published: almost 6 years ago
10.3390/biom10091230
The Transcriptomic Evidence on the Role of Abdominal Visceral vs. Subcutaneous Adipose Tissue in the Pathophysiology of Diabetes in Asian Indians Indicates the Involvement of BothCited by: 6
Author(s): Anshul Kumar, Prabhat Tiwari, Aditya Saxena, Naincy Purwar, Nitin Wahi, Balram Sharma, Sandeep Kumar Mathur
Software Mentions: 4
Published: almost 6 years ago
10.1530/ERC-19-0448
Effects of epigenetic pathway inhibitors on corticotroph tumour AtT20 cellsCited by: 5
Author(s): Kate E Lines, P. Filippakopoulos, Mark Stevenson, Susanne Müller, Helen Lockstone, Benjamin Wright, Stefan Knapp, David Buck, C. Bountra, R V Thakker
Software Mentions: 4
Published: over 6 years ago
10.1186/s12935-018-0681-1
Identification of RPL5 and RPL10 as novel diagnostic biomarkers of Atypical teratoid/rhabdoid tumorsCited by: 6
Author(s): Yanming Ren, Chuanmin Tao, Xiliang Wang, Yan Ju
Software Mentions: 4
Published: over 7 years ago
10.1186/s12917-020-02373-9
Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motilityCited by: 5
Author(s): Maren van Son, Nina Hårdnes Tremoen, Ann Helen Gaustad, Dag Inge Våge, Teklu Tewoldebrhan Zeremichael, Frøydis Deinboll Myromslien, Eli Grindflek
Software Mentions: 4
Published: about 6 years ago
10.1186/1752-0509-8-55
TGF-β stimulation in human and murine cells reveals commonly affected biological processes and pathways at transcription levelCited by: 29
Author(s): Khalid Abnaof, Nikhil Mallela, Gudrun Walenda, Steffen K. Meurer, Kristin Seré, Qiong Lin, Boudewijn J. J. Smeets, Kurt Hoffmann, Wolfgang Wagner, Martin Zenke, Ralf Weiskirchen, Holger Fröhlich
Software Mentions: 4
Published: over 12 years ago
10.3390/ani10061055
Microbial Communities Associated with Farmed Genypterus chilensis: Detection in Water Prior to Bacterial Outbreaks Using Culturing and High-Throughput SequencingCited by: 5
Author(s): Arturo Levicán, James S. Fisher, Sandra L. McLellan, Rubén Avendaño‐Herrera
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pgen.1007139
An efficient Bayesian meta-analysis approach for studying cross-phenotype genetic associationsCited by: 40
Author(s): Årindam Majumdar, Tanushree Haldar, Sourabh Bhattacharya, John S. Witte
Software Mentions: 4
Published: over 8 years ago
10.1186/1471-2164-11-365
Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injuryCited by: 39
Author(s): Jesper Ryge, Ole Winther, Jacob Wienecke, Albin Sandelin, Ann-Charlotte Westerdahl, Hans Hultborn, Ole Kiehn
Software Mentions: 4
Published: over 16 years ago
10.1038/s41437-021-00455-4
Genomic methods reveal independent demographic histories despite strong morphological conservatism in fish speciesCited by: 2
Author(s): Jessika M. M. Neves, Zachary J Nolen, Nídia Noemi Fabré, Tamí Mott, Ricardo José Garcia Pereira
Software Mentions: 4
Published: about 5 years ago
10.1155/2021/6616434
Weighted Gene Coexpression Network Analysis Uncovers Critical Genes and Pathways for Multiple Brain Regions in Parkinson’s DiseaseCited by: 4
Author(s): Jianjun Huang, Li Liu, Lingling Qin, Hehua Huang, Li Xue
Software Mentions: 4
Published: over 5 years ago
10.3389/fnsys.2020.00046
Dorsal Column Nuclei Neural Signal Features Permit Robust Machine-Learning of Natural Tactile- and Proprioception-Dominated StimuliCited by: 2
Author(s): Alastair J. Loutit, Jason R. Potas
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-021-94292-4
Prevalence of cancer susceptibility variants in patients with multiple Lynch syndrome related cancersCited by: 7
Author(s): Yoon Young Choi, Su‐Jin Shin, Jae Eun Lee, Lisa Madlensky, Seung Tae Lee, Ji Soo Park, Jeong-Hyeon Jo, Hyun Ki Kim, Daniela Nachmanson, Xiaojun Xu, Sung Hoon Noh, Jae‐Ho Cheong, Olivier Harismendy
Software Mentions: 4
Published: about 5 years ago
10.1155/2020/8604340
<i>MCM2</i>and<i>NUSAP1</i>Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic CancerCited by: 16
Author(s): Yajun Deng, Hanyun Ma, Jinyong Hao, Qiqi Xie, Rui Zhao
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-021-85735-z
The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in EurasiaCited by: 9
Author(s): Anna Seidl, Karin Tremetsberger, Simon Pfanzelt, Frank R. Blattner, Barbara Neuffer, Nikolai Friesen, Herbert Hurka, А. И. Шмаков, Batlai Oyuntsetseg, Anže Žerdoner Čalasan, Polina V. Vesselova, Karl‐Georg Bernhardt
Software Mentions: 4
Published: over 5 years ago
10.1038/s41597-020-00792-9
A gridded establishment dataset as a proxy for economic activity in ChinaCited by: 14
Author(s): Lei Dong, Xiaohui Yuan, Meng Li, Carlo Ratti, Yu Liu
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-021-93878-2
Benchmarking germline CNV calling tools from exome sequencing dataCited by: 27
Author(s): Veronika Gordeeva, Е. И. Шарова, Konstantin Babalyan, Rinat Sultanov, Vadim M. Govorun, Georgij Arapidi
Software Mentions: 4
Published: about 5 years ago
10.1016/j.comtox.2017.10.001
Ab initio chemical safety assessment: A workflow based on exposure considerations and non-animal methodsCited by: 64
Author(s): Elisabet Berggren, Andrew White, Gladys Ouédraogo, Alicia Paini, Andrea-Nicole Richarz, Frédéric Bois, Thomas E. Exner, Sofia B. Leite, Leo A. van Grunsven, Andrew Worth, Catherine Mahony
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pone.0256147
Reactive anti-predator behavioral strategy shaped by predator characteristicsCited by: 9
Author(s): Meredith S. Palmer, Craig Packer
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12915-018-0556-x
Evolutionary stability of topologically associating domains is associated with conserved gene regulationCited by: 108
Author(s): Jan Krefting, Miguel A. Andrade‐Navarro, Jonas Ibn-Salem
Software Mentions: 4
Published: almost 8 years ago
10.3390/jpm11080686
JDSNMF: Joint Deep Semi-Non-Negative Matrix Factorization for Learning Integrative Representation of Molecular Signals in Alzheimer’s DiseaseCited by: 5
Author(s): Sehwan Moon, Hyunju Lee
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pgen.1006959
Loss of the chromatin modifier Kdm2aa causes BrafV600E-independent spontaneous melanoma in zebrafishCited by: 12
Author(s): Catherine Scahill, Zsofia Digby, Ian Sealy, Sonia Wojciechowska, Richard White, John Collins, Derek L. Stemple, Till Bartke, Marie E. Mathers, E. Elizabeth Patton, Elisabeth M Busch-Nentwich
Software Mentions: 4
Published: almost 9 years ago
10.3389/fmicb.2021.682886
Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene DatabaseCited by: 5
Author(s): Briony Jones, Tim Goodall, Paul B. L. George, Hyun S. Gweon, Jérémy Puissant, Daniel S. Read, Bridget Emmett, David A. Robinson, Davey L. Jones, Robert I. Griffiths
Software Mentions: 4
Published: about 5 years ago
10.2196/27317
Analyzing Cross-country Pandemic Connectedness During COVID-19 Using a Spatial-Temporal Database: Network AnalysisCited by: 14
Author(s): Amanda M. Y. Chu, Jacky N. L. Chan, Jenny T. Y. Tsang, Afy Tiwari, Mike K. P. So
Software Mentions: 4
Published: over 5 years ago
10.1186/s13637-016-0044-y
A pedagogical walkthrough of computational modeling and simulation of Wnt signaling pathway using static causal models in MATLABCited by: 2
Author(s): Shriprakash Sinha
Software Mentions: 4
Published: almost 10 years ago
10.1186/s12859-019-2804-7
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)Cited by: 40
Author(s): Stefan Graw, Rosalyn Henn, Jeffrey Thompson, Devin C. Koestler
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pgen.1006314
Pleiotropic Associations of Allelic Variants in a 2q22 Region with Risks of Major Human Diseases and MortalityCited by: 26
Author(s): Alexander M. Kulminski, Liyun He, Irina Culminskaya, Yury Loika, Yelena Kernogitski, Konstantin G. Arbeev, Elena Loiko, Liubov Arbeeva, Olivia Bagley, Matt Duan, Arseniy Yashkin, Fang Fang, Mikhail Kovtun, Svetlana V. Ukraintseva, Deqing Wu, Anatoliy I. Yashin
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pone.0179265
Cancer cell redirection biomarker discovery using a mutual information approachCited by: 7
Author(s): Kimberly Roche, F. Alex Feltus, Jang Pyo Park, Marie–May Coissieux, Chenyan Chang, Vera B. S. Chan, Mohamed Bentires‐Alj, Brian W. Booth
Software Mentions: 4
Published: about 9 years ago
10.1155/2020/2137319
Identification of Four Pathological Stage-Relevant Genes in Association with Progression and Prognosis in Clear Cell Renal Cell Carcinoma by Integrated Bioinformatics AnalysisCited by: 5
Author(s): Dengyong Xu, Yuzi Xu, Yiming Lv, Fei Wu, Yunlong Liu, Ming Zhu, Dake Chen, Bingjun Bai
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pmed.1001907
The HIV Treatment Gap: Estimates of the Financial Resources Needed versus Available for Scale-Up of Antiretroviral Therapy in 97 Countries from 2015 to 2020Cited by: 46
Author(s): Arin Dutta, Catherine Barker, Ashley Kallarakal
Software Mentions: 4
Published: over 10 years ago
10.18632/aging.103859
Weighted gene coexpression network analysis identifies the key role associated with acute coronary syndromeCited by: 4
Author(s): Yong Wang, Miao Liu, Tao Lin, Jianhong Chen, Chuan-Meng Zhu, Ye Li, Bin Qi, Fei Liao, Rongshan Li
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pmed.1002619
Mortality attributable to hot and cold ambient temperatures in India: a nationally representative case-crossover studyCited by: 88
Author(s): Sze Hang Fu, Antonio Gasparrini, Peter S Rodriguez, Prabhat Jha
Software Mentions: 4
Published: almost 8 years ago
10.3390/microorganisms8101550
Seasonal and Nutrient Supplement Responses in Rumen Microbiota Structure and Metabolites of Tropical Rangeland CattleCited by: 19
Author(s): Gonzalo Martínez Fernández, Jinzhen Jiao, Jagadish Padmanabha, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 4
Published: almost 6 years ago
10.3390/v12111290
Highly Pathogenic Avian Influenza (H5N1) Landscape Suitability Varies by Wetland Habitats and the Degree of Interface between Wild Waterfowl and Poultry in IndiaCited by: 3
Author(s): Michael Walsh, Siobhan M. Mor, Shaikh Shah Hossain
Software Mentions: 4
Published: over 5 years ago
10.18632/aging.203505
Transcriptomic analysis of elderly women with low muscle mass: association with immune system pathwayCited by: 1
Author(s): Levi H. Jales Neto, Bidossessi Wilfried Hounkpe, Geórgea Hermogenes Fernandes, Liliam Takayama, Valéria F. Caparbo, Neuza Lopes, Alexandre C. Pereira, Rosa Maria Rodrigues Pereira
Software Mentions: 4
Published: almost 5 years ago
10.7554/eLife.48660
Stochastic cell-cycle entry and cell-state-dependent fate outputs of injury-reactivated tectal radial glia in zebrafishCited by: 13
Author(s): Song Yu, Jie He
Software Mentions: 4
Published: almost 7 years ago
10.1098/rsos.150555
Extragalactic background light measurements and applicationsCited by: 68
Author(s): Asantha Cooray
Software Mentions: 4
Published: over 10 years ago
10.1371/journal.pcbi.1006760
Investigating the deregulation of metabolic tasks via Minimum Network Enrichment Analysis (MiNEA) as applied to nonalcoholic fatty liver disease using mouse and human omics dataCited by: 6
Author(s): Vikash Pandey, Vassily Hatzimanikatis
Software Mentions: 4
Published: over 7 years ago
10.1186/1471-2407-13-58
Molecular profiling of cutaneous squamous cell carcinomas and actinic keratoses from organ transplant recipientsCited by: 79
Author(s): Liesbeth Hameetman, Suzan Commandeur, Jan Nico Bouwes Bavinck, Hermina C. Wisgerhof, Frank R. de Gruijl, Rein Willemze, Leon H.F. Mullenders, Cornelis P. Tensen, Harry Vrieling
Software Mentions: 4
Published: over 13 years ago
10.1186/1471-2105-11-45
NeatMap - non-clustering heat map alternatives in RCited by: 77
Author(s): Satwik Rajaram, Yoshitsugu Oono
Software Mentions: 4
Published: over 16 years ago
10.18632/aging.101751
miRNA-mRNA crosstalk in myocardial ischemia induced by calcified aortic valve stenosisCited by: 12
Author(s): Chenyang Duan, Zhijun Cao, Fuqin Tang, Jian Zhao, Chunshui Liang, Hong Liu, Xiao Ye, Liangming Liu, Rong Ma
Software Mentions: 4
Published: over 7 years ago
10.1038/s41598-018-29971-w
Addition of dairy lipids and probiotic Lactobacillus fermentum in infant formula programs gut microbiota and entero-insular axis in adult minipigsCited by: 28
Author(s): Marion Lemaire, Samir Dou, Armelle Cahu, Michèle Formal, Laurence Le Normand, Véronique Rome, Isabelle Nogret, Stéphanie Ferret‐Bernard, Moez Rhimi, Isabelle Cuinet, Cécile Canlet, Marie Tremblay-Franco, Pascale Le Ruyet, Charlotte Baudry, Philippe Gérard, Isabelle Le Huërou‐Luron, Sophie Blat
Software Mentions: 4
Published: almost 8 years ago
10.12688/f1000research.51143.1
periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNACited by: 5
Author(s): Jacques Serizay, Julie Ahringer
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-019-2952-9
Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing dataCited by: 19
Author(s): Savvas Kinalis, Finn Cilius Nielsen, Ole Winther, Frederik Otzen Bagger
Software Mentions: 4
Published: about 7 years ago
10.1007/s00228-020-03064-y
Renal ischemic adverse drug events related to tranexamic acid in women of child-bearing age: an analysis of pharmacovigilance dataCited by: 5
Author(s): Dominik Stämpfli, Stefan Weiler, Carolyn F. Weiniger, Andrea M. Burden, M. Heesen
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-015-1689-8
A user-friendly workflow for analysis of Illumina gene expression bead array data available at the arrayanalysis.org portalCited by: 15
Author(s): Lars Eijssen, Varshna Goelela, Thomas Kelder, Michiel E. Adriaens, Chris T. Evelo, Marijana Radonjić
Software Mentions: 4
Published: about 11 years ago
10.1186/s13148-021-01090-w
Identification of prognosis-related molecular subgroups based on DNA methylation in pancreatic cancerCited by: 6
Author(s): Xiaoli Yin, Lingming Kong, Peng Liu
Software Mentions: 4
Published: about 5 years ago
10.1093/bioinformatics/btu027
IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metricsCited by: 15
Author(s): Marta Rosikiewicz, Marc Robinson‐Rechavi
Software Mentions: 4
Published: over 12 years ago
10.1186/s13071-020-04336-3
High-resolution habitat suitability model for Phlebotomus pedifer, the vector of cutaneous leishmaniasis in southwestern EthiopiaCited by: 2
Author(s): Myrthe Pareyn, Anneleen Rutten, Behailu Merdekios, Ronja E. M. Wedegärtner, Nigatu Girma, Leo Regelbrugge, Simon Shibru, Herwig Leirs
Software Mentions: 4
Published: almost 6 years ago
10.3390/ijerph18042194
The Impact of Individual Mobility on Long-Term Exposure to Ambient PM2.5: Assessing Effect Modification by Travel Patterns and Spatial Variability of PM2.5Cited by: 12
Author(s): Eun-Hye Yoo, Qiang Pu, Youngseob Eum, Xiangyu Jiang
Software Mentions: 4
Published: over 5 years ago
10.18632/aging.202943
Identification of key pathways and genes in carotid atherosclerosis through bioinformatics analysis of RNA-seq dataCited by: 2
Author(s): Zhongchen Li, Jiheng Hao, Kun Chen, Qunlong Jiang, Peijian Wang, Xiaohui Xing, Jiyue Wang, Yinjiang Zhang, Yi Xiao, Liyong Zhang
Software Mentions: 4
Published: about 5 years ago
10.1038/s41598-017-03222-w
Changes in novel haematological parameters following thermal injury: A prospective observational cohort studyCited by: 15
Author(s): Robert J. Dinsdale, Amarpreet Devi, Peter Hampson, Christopher M. Wearn, Amy Bamford, Jon Hazeldine, Jonathan Bishop, Sumiya Ahmed, Chris Watson, Janet M. Lord, Naiem Moiemen, Paul Harrison
Software Mentions: 4
Published: about 9 years ago
10.3389/fpls.2020.574982
Metabolic, Enzymatic Activity, and Transcriptomic Analysis Reveals the Mechanism Underlying the Lack of Characteristic Floral Scent in Apricot Mei VarietiesCited by: 6
Author(s): Fei Bao, Tengxun Zhang, Anqi Ding, Aiqin Ding, Weiru Yang, Jia Wang, Tangren Cheng, Qixiang Zhang
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-020-57542-5
Large-scale Analyses of Disease Biomarkers and Apremilast Pharmacodynamic EffectsCited by: 11
Author(s): И. В. Медведева, Matthew E. Stokes, Dominic Eisinger, Samuel T. LaBrie, Jing Ai, Matthew Trotter, Peter Schäfer, Robert Yang
Software Mentions: 4
Published: over 6 years ago
10.3390/nu13061898
Relation of Serum Copper Status to Survival in COVID-19Cited by: 55
Author(s): Julian Hackler, Raban Arved Heller, Qian Sun, Marco Schwarzer, Joachim Diegmann, Manuel Bachmann, Arash Moghaddam, Lutz Schomburg
Software Mentions: 4
Published: about 5 years ago
10.1002/ece3.7623
Enhancing flowering plant functional richness improves wild bee diversity in vineyard inter‐rows in different floral kingdomsCited by: 6
Author(s): Sophie Kratschmer, Bärbel Pachinger, René Gaigher, James S. Pryke, J. van Schalkwyk, Michael J. Samways, Annalie Melin, Temitope Kehinde, Johann G. Zaller, Silvia Winter
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pone.0209449
Lexical category acquisition is facilitated by uncertainty in distributional co-occurrencesCited by: 5
Author(s): Giovanni Cassani, Robert Grimm, Walter Daelemans, Steven Gillis
Software Mentions: 4
Published: over 7 years ago
10.1186/s12864-020-06886-3
MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing dataCited by: 8
Author(s): Yadollah Shahryary, Rashmi R. Hazarika, Frank Johannes
Software Mentions: 4
Published: about 6 years ago
10.1186/s13075-021-02530-x
Biomechanical stress in the context of competitive sports training triggers enthesitisCited by: 7
Author(s): Dávid Simon, Arnd Kleyer, Sara Bayat, Johannes Knitza, Larissa Valor‐Méndez, M. Schweiger, Georg Schett, Koray Taşçılar, Axel J. Hueber
Software Mentions: 4
Published: about 5 years ago
10.1186/s13073-020-00791-w
Best practices for variant calling in clinical sequencingCited by: 136
Author(s): Daniel C. Koboldt
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0220647
Hypoxia causes woodlice (Porcellio scaber) to select lower temperatures and impairs their thermal performance and heat toleranceCited by: 10
Author(s): Andrzej Antoł, Wiktoria Rojek, Sanjeev Singh, Damian Piekarski, Marcin Czarnołęski
Software Mentions: 4
Published: almost 7 years ago
10.1371/journal.pone.0175127
Wild inside: Urban wild boar select natural, not anthropogenic food resourcesCited by: 21
Author(s): Milena Stillfried, Pierre Gras, Matthias Busch, Konstantin Börner, Stephanie Kramer‐Schadt, Sylvia Ortmann
Software Mentions: 4
Published: over 9 years ago