10.1111/eva.12703
Manipulating plant phylogenetic diversity for green roof ecosystem service deliveryCited by: 20
Author(s): J. Scott MacIvor, Nicholas Sookhan, Carlos Alberto Arnillas, Anushree Bhatt, Shameek Das, Simone-Louise E. Yasui, Garland Xie, Marc W. Cadotte
Software Mentions: 5
Published: almost 8 years ago
10.1111/evo.13948
The evolution of autotomy in leaf‐footed bugsCited by: 28
Author(s): Zachary Emberts, Colette M. St. Mary, Cody Coyotee Howard, Michael Forthman, Philip W. Bateman, Ummat Somjee, Wei Song Hwang, Daiqin Li, Rebecca T. Kimball, Charles H. Miller
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pgen.1006222
KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulansCited by: 68
Author(s): Agnieszka Gacek‐Matthews, Harald Berger, Takahiko Sasaki, Kathrin Wittstein, Clemens Gruber, Zachary A. Lewis, Joseph Strauss
Software Mentions: 5
Published: almost 10 years ago
10.3389/fgene.2020.591806
Genome-Wide Identification of Circular RNAs in Response to Low-Temperature Stress in Tomato LeavesCited by: 11
Author(s): Xuedong Yang, Yahui Liu, Hui Zhang, Jinyu Wang, Gaurav Zinta, Shangbo Xie, Weimin Zhu, Wen-Feng Nie
Software Mentions: 5
Published: over 5 years ago
10.3390/ijms22031111
Detection of a DNA Methylation Signature for the Intellectual Developmental Disorder, X-Linked, Syndromic, Armfield TypeCited by: 9
Author(s): Sadegheh Haghshenas, Michael A. Levy, Jennifer Kerkhof, Erfan Aref‐Eshghi, Haley McConkey, Tugce B. Balci, Victoria Mok Siu, Cindy Skinner, Roger E. Stevenson, Bekim Sadiković, Charles E. Schwartz
Software Mentions: 5
Published: over 5 years ago
10.3389/fimmu.2021.640837
Transcriptomic Analysis of Inflammatory Cardiomyopathy Identifies Molecular Signatures of Disease and Informs in silico Prediction of a Network-Based Rationale for TherapyCited by: 1
Author(s): Khushboo Singh, Hai Fang, Graham Davies, Benjamin Wright, Helen Lockstone, Richard O. Williams, Daniela Čiháková, Julian C. Knight, Shoumo Bhattacharya
Software Mentions: 5
Published: over 5 years ago
10.1186/1471-2164-14-725
Positively correlated miRNA-mRNA regulatory networks in mouse frontal cortex during early stages of alcohol dependenceCited by: 113
Author(s): Yury O. Nunez, Jay Truitt, Giorgio Gorini, Olga N. Ponomareva, Yuri A. Blednov, R. Adron Harris
Software Mentions: 5
Published: over 12 years ago
10.3390/cells10081923
Overexpression and Activation of αvβ3 Integrin Differentially Affects TGFβ2 Signaling in Human Trabecular Meshwork CellsCited by: 11
Author(s): Mark S. Filla, Keith Meyer, Jennifer A. Faralli, Donna M. Peters
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41598-018-29860-2
The rubber hand illusion induced by visual-thermal stimulationCited by: 12
Author(s): Jörg Trojan, Xaver Fuchs, Sophie-Louise Speth, Martin Diers
Software Mentions: 5
Published: almost 8 years ago
10.1007/s00122-021-03828-9
Genome-wide association mapping of sodium and potassium concentration in rice grains and shoots under alternate wetting and drying and continuously flooded irrigationCited by: 6
Author(s): Caijin Chen, Anthony J. Travis, Mahmud Hossain, Rafiqul Islam, Adam H. Price, Gareth J. Norton
Software Mentions: 5
Published: about 5 years ago
10.3389/fgene.2017.00168
A Pipeline for High-Throughput Concentration Response Modeling of Gene Expression for ToxicogenomicsCited by: 44
Author(s): John S. House, Fabian A. Grimm, Dereje D. Jima, Yifeng Zhou, Ivan Rusyn, Fred A. Wright
Software Mentions: 5
Published: over 8 years ago
10.1038/s41598-021-96633-9
Spatio-seasonal variation of water quality influenced by land use and land cover in Lake MuhaziCited by: 15
Author(s): Edovia Dufatanye Umwali, Alishir Kurban, Alain Isabwe, Richard Mind’je, Hossein Azadi, Zengkun Guo, Madeleine Udahogora, Anathalie Nyirarwasa, Jeanine Umuhoza, Vincent Nzabarinda, Aboubakar Gasirabo, Gulnur Sabirhazi
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41598-021-96378-5
Biogeography of acoustic biodiversity of NW Mediterranean coralligenous reefsCited by: 13
Author(s): Lucia Di Iorio, Manon Audax, Julie Déter, Florian Holon, Julie Lossent, Cédric Gervaise, Pierre Boissery
Software Mentions: 5
Published: almost 5 years ago
10.1016/j.celrep.2018.03.046
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome AtlasCited by: 111
Author(s): Gregory P. Way, Francisco Sanchez‐Vega, Konnor La, Joshua Armenia, Walid K. Chatila, Augustin Luna, Chris Sander, Andrew D. Cherniack, Deqin Ma, Giovanni Ciriello, Nikolaus Schultz, Yolanda Sánchez, Casey S. Greene
Software Mentions: 5
Published: over 8 years ago
10.1186/s13058-017-0814-9
DCYTB is a predictor of outcome in breast cancer that functions via iron-independent mechanismsCited by: 28
Author(s): David J. Lemler, Miranda L. Lynch, Lia Tesfay, Zhiyong Deng, Bibbin T. Paul, Xiaohong Wang, Poornima Hegde, David H. Manz, Suzy V. Torti, Frank M. Torti
Software Mentions: 5
Published: over 9 years ago
10.1186/s12859-019-3291-6
DeepMF: deciphering the latent patterns in omics profiles with a deep learning methodCited by: 10
Author(s): Lingxi Chen, Jianjun Xu, Shuai Cheng Li
Software Mentions: 5
Published: over 6 years ago
10.1186/s10020-021-00345-9
Association of CASC18/miR-20a-3p/TGFB2 ceRNA axis with occult lymph node metastasis in tongue squamous cell carcinomaCited by: 5
Author(s): Bo Zhou, Yue Zhou, Ying Liu, Hailin Zhang, Huangxing Mao, Mingjing Peng, Anji Xu, Zan Li, Hui Wang, Haolei Tan, Huayi Ren, Xiao Yan Zhou, Ying Long
Software Mentions: 5
Published: almost 5 years ago
10.1186/s11689-020-09316-3
Hippocampal transcriptome analysis following maternal separation implicates altered RNA processing in a mouse model of fetal alcohol spectrum disorderCited by: 9
Author(s): Bonnie Alberry, Christina A Castellani, Shiva M. Singh
Software Mentions: 5
Published: about 6 years ago
10.3389/fimmu.2021.626098
GMP-Compliant Universal Antigen Presenting Cells (uAPC) Promote the Metabolic Fitness and Antitumor Activity of Armored Cord Blood CAR-NK CellsCited by: 18
Author(s): Enli Liu, Sonny Ang, Lucila Nassif Kerbauy, Rafet Basar, Indreshpal Kaur, Mecit Kaplan, Li Li, Yijiu Tong, May Daher, Emily L. Ensley, Nadima Uprety, Ana Karen Nunez Cortes, Ryan Z Yang, Ye Li, Hila Shaim, Francia Reyes Silva, Paul Lin, Vakul Mohanty, Sunil Acharya, Mayra Shanley, Luis Muniz-Feliciano, Pinaki P. Banerjee, Ken Chen, Richard E. Champlin, Elizabeth J. Shpall, Katayoun Rezvani
Software Mentions: 5
Published: over 5 years ago
10.3390/ijms22168451
Rapid Transient Transcriptional Adaptation to Hypergravity in Jurkat T Cells Revealed by Comparative Analysis of Microarray and RNA-Seq DataCited by: 8
Author(s): Christian Vahlensieck, Cora S. Thiel, Jan Andreas Adelmann, Béatrice Lauber, Jennifer Polzer, Oliver Ullrich
Software Mentions: 5
Published: almost 5 years ago
10.1186/1471-2105-13-326
A computational pipeline for the development of multi-marker bio-signature panels and ensemble classifiersCited by: 29
Author(s): Oliver P. Günther, Virginia Chen, Gabriela Cohen Freue, Robert Balshaw, Scott J. Tebbutt, Zsuzsanna Hollander, Mandeep Takhar, W. Robert McMaster, Bruce M. McManus, Paul Keown, Raymond T. Ng
Software Mentions: 5
Published: over 13 years ago
10.1186/s40249-018-0506-4
Integrating ecological approaches to interrupt schistosomiasis transmission: opportunities and challengesCited by: 10
Author(s): Song Liang, Eniola Michael Abe, Xiao‐Nong Zhou
Software Mentions: 5
Published: over 7 years ago
10.1016/j.molcel.2019.11.021
Histone H2AK119 Mono-Ubiquitination Is Essential for Polycomb-Mediated Transcriptional RepressionCited by: 208
Author(s): Simone Tamburri, Elisa Lavarone, Daniel Fernández-Pérez, E. J. Conway, Marika Zanotti, Daria Manganaro, Diego Pasini
Software Mentions: 5
Published: over 6 years ago
10.3389/fimmu.2021.705848
Brg1 Supports B Cell Proliferation and Germinal Center Formation Through Enhancer ActivationCited by: 6
Author(s): Dominik Schmiedel, Hadas Hezroni, Amit Hamburg, Ziv Shulman
Software Mentions: 5
Published: almost 5 years ago
10.1186/1471-2164-15-1103
An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assembliesCited by: 75
Author(s): Romain Blanc-Mathieu, Bram Verhelst, Évelyne Derelle, Stéphane Rombauts, François‐Yves Bouget, Isabelle A. Carré, Annie Château, Adam Eyre‐Walker, Nigel Grimsley, Hervé Moreau, Benoît Piégu, Éric Rivals, Wendy Schackwitz, Yves Van de Peer, Gwenaël Piganeau
Software Mentions: 5
Published: over 11 years ago
10.1053/j.gastro.2020.09.043
Targeting DNA Damage Response and Replication Stress in Pancreatic CancerCited by: 73
Author(s): Stephan Dreyer, Rosanna Upstill-Goddard, Viola Paulus-Hock, Clara Paris, Eirini-Maria Lampraki, Eloïse Dray, Bryan Serrels, Giuseppina Caligiuri, Selma Rebus, Dennis Plenker, Zachary Galluzzo, Holly Brunton, Richard Cunningham, Mathias Tesson, Craig Nourse, Ulla-Maja Bailey, Marc D. Jones, Kim Moran-Jones, Derek W. Wright, Fraser Duthie, Karin A. Oien, Lisa Evers, Colin McKay, Grant A. McGregor, Aditi Gulati, Rachel Brough, Ilirjana Bajrami, Stephen J. Pettitt, Michele L. Dziubinski, Juliana Candido, Frances R. Balkwill, Simon T. Barry, Robert Grützmann, Lola Rahib, Amber Johns, Marina Pajic, Fieke E. M. Froeling, Philip Beer, Elizabeth A. Musgrove, Gloria M. Petersen, Alan Ashworth, Margaret C. Frame, Howard C. Crawford, Diane M. Simeone, Chris Lord, Debabrata Mukhopadhyay, Christian Pilarsky, David A. Tuveson, Susanna L. Cooke, Nigel B. Jamieson, Jennifer P. Morton, Owen J. Sansom, Peter J. Bailey, Andrew V. Biankin, David K. Chang, Sarah E. Allison, Peter J. Bailey, Ulla-Maja Bailey, Andrew V. Biankin, Dario Beraldi, Holly Brunton, Giuseppina Caligiuri, Euan Cameron, David K. Chang, Susanna L. Cooke, Richard Cunningham, Stephan Dreyer, Paul Grimwood, Shane Kelly, Eirini-Maria Lampraki, John L. Marshall, Sancha Martin, Brian McDade, Daniel L. McElroy, Elizabeth A. Musgrove, Craig Nourse, Viola Paulus-Hock, Donna T. Ramsay, Rosanna Upstill-Goddard, Derek W. Wright, Marc D. Jones, Lisa Evers, Selma Rebus, Lola Rahib, Bryan Serrels, Jane Hair, Nigel B. Jamieson, Colin McKay, Paul Westwood, Nicola Williams, Fraser Duthie, Andrew V. Biankin, Amber Johns, Amanda Mawson, David K. Chang, Christopher J. Scarlett, Mary-Anne L. Brancato, Sarah J. Rowe, Skye Simpson, Mona Martyn-Smith, Michelle T. Thomas, Lorraine A. Chantrill, Venessa T. Chin, Angela Chou, Mark J. Cowley, Jeremy L. Humphris, Marc D. Jones, R. Scott Mead, Adnan Nagrial, Marina Pajic, Jessica Pettit, Mark Pinese, Ilse Rooman, Jianmin Wu, Tao Jiang, Renee DiPietro, Clare Watson, Angela Steinmann, Hong Ching Lee, Rachel Wong, Andreia V. Pinho, Marc Giry-Laterrière, Roger J. Daly, Elizabeth A. Musgrove, Robert L. Sutherland, Sean M. Grimmond, Nicola Waddell, Karin S. Kassahn, David Miller, Peter J. Wilson, Ann‐Marie Patch, Sarah Song, Ivon Harliwong, Senel Idrisoglu, Craig Nourse, Ehsan Nourbakhsh, Suzanne Manning, Shivangi Wani, Milena Gongora, Matthew Anderson, Oliver Holmes, Conrad Leonard, Darrin Taylor, Scott Wood, Christina Xu, Kátia Nones, J. Lynn Fink, Angelika N. Christ, Tim Bruxner, Nicole Cloonan, Felicity Newell, John V. Pearson, Peter J. Bailey, Michael C. Quinn, Shivashankar H. Nagaraj, Stephen H. Kazakoff, Nick M. Waddell, Keerthana Krisnan, Kelly Quek, David Wood, Jaswinder S. Samra, Anthony J. Gill, Nick Pavlakis, Alex Guminski, Christopher W. Toon, Ray Asghari, Neil D. Merrett, Darren Pavey, Amitabha Das, Peter H. Cosman, Kasim Ismail, Chelsie O’Connnor, Vincent Lam, Duncan McLeod, Henry Pleass, A. J. Richardson, Virginia James, James G. Kench, Caroline Cooper, David Joseph, Charbel Sandroussi, Michael Crawford, James Gallagher, Michael Texler, Cindy Forest, Andrew Laycock, Krishna Epari, Mo Ballal, David Fletcher, Sanjay Mukhedkar, Nigel Spry, Bastiaan DeBoer, Ming Gene Chai, Nikolajs Zeps, Maria Beilin, Kynan Feeney, Nan Q. Nguyen, Andrew Ruszkiewicz, Chris Worthley, Chuan Ping Tan, Tamara Debrencini, John Chen, Mark E. Brooke-Smith, Virginia Papangelis, H.H.K. Tang, Andrew P. Barbour, Andrew D. Clouston, Patrick Martin, Thomas O’Rourke, Amy Chiang, J. Fawcett, Kellee Slater, Shinn Yeung, Michael Hatzifotis, Peter Hodgkinson, Christopher Christophi, Mehrdad Nikfarjam, A. Mountain, Victorian Cancer Biobank, James R. Eshleman, Ralph H. Hruban, Anirban Maitra, Christine A. Iacobuzio‐Donahue, Richard D. Schulick, Christopher L. Wolfgang, Richard A. Morgan, Mary Hodgin, Aldo Scarpa, Rita T. Lawlor, Stefania Beghelli, Vincenzo Corbo, Maria Scardoni, Claudio Bassi, Margaret A. Tempero, Andrew V. Biankin, Sean M. Grimmond, David K. Chang, Elizabeth A. Musgrove, Marc D. Jones, Craig Nourse, Nigel B. Jamieson, Janet Graham, Andrew V. Biankin, David K. Chang, Nigel B. Jamieson, Janet Graham
Software Mentions: 5
Published: over 5 years ago
10.3389/fimmu.2020.607314
Genetic Dissection of the Regulatory Mechanisms of Ace2 in the Infected Mouse LungCited by: 11
Author(s): Fuyi Xu, Jun Gao, Silke Bergmann, Amy C. Sims, David G. Ashbrook, Ralph S. Baric, Yan Cui, Colleen B. Jonsson, Kui Li, Robert W. Williams, Klaus Schughart, Lu Lu
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-020-79014-6
Data preprocessing workflow for exhaled breath analysis by GC/MS using open sourcesCited by: 15
Author(s): Rosa Alba Sola Martínez, José M. Pastor, Gema Lozano Terol, Julia Gallego‐Jara, Luis García‐Marcos, Manuel Cánovas Díaz, Teresa De Diego
Software Mentions: 5
Published: over 5 years ago
10.1186/s12859-019-3055-3
Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imagingCited by: 38
Author(s): Eric Czech, Bülent Arman Aksoy, Pınar Aksoy, Jeff Hammerbacher
Software Mentions: 5
Published: almost 7 years ago
10.3390/jcm8010050
Efficacy of Integrating a Novel 16-Gene Biomarker Panel and Intelligence Classifiers for Differential Diagnosis of Rheumatoid Arthritis and OsteoarthritisCited by: 24
Author(s): Nguyen Phuoc Long, Seongoh Park, Nguyễn Hoàng Anh, Jung Eun Min, Sang Jun Yoon, Hyung Min Kim, Tran Diem Nghi, Dong Kyu Lim, Jeong Hill Park, Jong-Tae Lim, Sung Won Kwon
Software Mentions: 5
Published: over 7 years ago
10.3389/fimmu.2021.643298
Immunomodulation of T Helper Cells by Tumor Microenvironment in Oral Cancer Is Associated With CCR8 Expression and Rapid Membrane Vitamin D Signaling PathwayCited by: 14
Author(s): Marco Fraga, Milly Yáñez, Macarena Sherman, Faryd Llerena, Mauricio Hernández, Guillermo Nourdin, Francisco Álvarez, Joaquín Urrizola, César Rivera, Liliana Lamperti, Lorena Nova, S Rojas Castro, Olga Zambrano, Alejandro Cifuentes, León Campos, Sergio Moya, J. Pastor, Marcelo Nuñez, Jorge Gatica, Jorge Figueroa, Felipe Zúñiga, Carlos Salomón, Gustavo Cerda, Ricardo Puentes, Gonzalo Labarca, Mabel Vidal, Reuben McGregor, Estefanía Nova-Lamperti
Software Mentions: 5
Published: about 5 years ago
10.7150/jca.50443
Six Novel Biomarkers for Diagnosis and Prognosis of Esophageal squamous cell carcinoma: validated by scRNA-seq and qPCRCited by: 24
Author(s): Liuhai Zheng, Linzhi Li, Jun Xie, Hai Jin, Nianyong Zhu
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1003703
Inferring Clonal Composition from Multiple Sections of a Breast CancerCited by: 104
Author(s): Habil Zare, Junfeng Wang, Alex Hu, Kris Weber, Joshua D. Smith, Deborah A. Nickerson, Chang Woo Song, Daniela Witten, C. Anthony Blau, William Stafford Noble
Software Mentions: 5
Published: about 12 years ago
10.1111/jcmm.15851
Prognostic and predictive value of a mRNA signature in peripheral T‐cell lymphomas: A mRNA expression analysisCited by: 6
Author(s): Jiannan Tu, Zhixing Kuang, Xiaoxiao Xie, Shizhen Wu, Ting Wu, Shengchi Chen
Software Mentions: 5
Published: over 5 years ago
10.1186/s12864-015-2096-x
The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica BorkhCited by: 19
Author(s): James Boocock, David Chagné, Tony R. Merriman, Michael A. Black
Software Mentions: 5
Published: over 10 years ago
10.1038/s41598-019-44679-1
The ability of Anopheles gambiae mosquitoes to bite through a permethrin-treated net and the consequences for their fitnessCited by: 22
Author(s): Gaël Hauser, Kevin Thiévent, Jacob C. Koella
Software Mentions: 5
Published: about 7 years ago
10.1371/journal.pone.0237601
Impact of calculated plasma volume status on all-cause and cardiovascular mortality: 4-year nationwide community-based prospective cohort studyCited by: 14
Author(s): Yoichiro Otaki, Tetsu Watanabe, Tsuneo Konta, Masafumi Watanabe, Koichi Asahi, Kunihiro Yamagata, Shouichi Fujimoto, Kazuhiko Tsuruya, Ichiei Narita, Masato Kasahara, Yugo Shibagaki, Kunitoshi Iseki, Toshiki Moriyama, Masahide Kondo, Tsuyoshi Watanabe
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-018-25679-z
A machine learning model with human cognitive biases capable of learning from small and biased datasetsCited by: 38
Author(s): Hidetaka Taniguchi, Hiroshi Satō, Tomohiro Shirakawa
Software Mentions: 5
Published: about 8 years ago
10.1371/journal.pone.0243446
Genomic and morphological evidence of distinct populations in the endemic common (weedy) seadragon Phyllopteryx taeniolatus (Syngnathidae) along the east coast of AustraliaCited by: 9
Author(s): O. Selma Klanten, Michelle R. Gaither, Samuel E. Greaves, Kade Mills, Kristine O’Keeffe, John Turnbull, Rob McKinnon, David J. Booth
Software Mentions: 5
Published: over 5 years ago
10.3390/plants10061043
Genotypic Variability on Grain Yield and Grain Nutritional Quality Characteristics of Wheat Grown under Elevated CO2 and High TemperatureCited by: 9
Author(s): Emilio L. Marcos-Barbero, Pilar Pérez Pérez, Rafael Martínez‐Carrasco, Juan B. Arellano, Rosa Morcuende
Software Mentions: 5
Published: about 5 years ago
10.3389/fimmu.2018.02406
Molecular Signature of Aluminum Hydroxide Adjuvant in Ovine PBMCs by Integrated mRNA and microRNA Transcriptome SequencingCited by: 15
Author(s): Endika Varela-Martínez, Naiara Abendaño, Javier Asín, Maialen Sistiaga-Poveda, Marta Pérez, Ramsés Reina, D. de Andrés, Lluís Luján, Begoña M. Jugo
Software Mentions: 5
Published: over 7 years ago
10.1093/gigascience/giz057
Map and model—moving from observation to prediction in toxicogenomicsCited by: 15
Author(s): Andreas Schüttler, Rolf Altenburger, Madeleine Ammar, Marcella Bader-Blukott, Gianina Jakobs, Johanna Knapp, Janet Krüger, Kristin Reiche, Gi‐Mick Wu, Wibke Busch
Software Mentions: 5
Published: about 7 years ago
10.1186/s13007-019-0444-6
Combining self-organizing maps and biplot analysis to preselect maize phenotypic components based on UAV high-throughput phenotyping platformCited by: 6
Author(s): Huagen Liang, Guijun Yang, Huayang Dai, Hao Yang, Bo Xu, Heli Li, Long Huang, Zhenhai Li, Xiaodong Yang, Chunjiang Zhao
Software Mentions: 5
Published: about 7 years ago
10.1371/journal.pone.0064747
CD14 −159 C>T Gene Polymorphism with Increased Risk of Tuberculosis: Evidence from a Meta-AnalysisCited by: 18
Author(s): Mohammed Y. Areeshi, Raju K. Mandal, Aditya K. Panda, Shekhar Chandra Bisht, Shafiul Haque
Software Mentions: 5
Published: about 13 years ago
10.1371/journal.pone.0164732
The Impact of Superoxide Dismutase-1 Genetic Variation on Cardiovascular and All-Cause Mortality in a Prospective Cohort Study: The Yamagata (Takahata) StudyCited by: 18
Author(s): Yoichiro Otaki, Tetsu Watanabe, Satoshi Nishiyama, Hiroki Takahashi, Takanori Arimoto, Tetsuro Shishido, Takuya Miyamoto, Tsuneo Konta, Yoko Shibata, Hidenori Sato, Ryo Kawasaki, Makoto Daimon, Yoshiyuki Ueno, Takeshi Kato, Takamasa Kayama, Isao Kubota
Software Mentions: 5
Published: almost 10 years ago
10.3389/fmed.2020.00475
Impact of Gut Microbiome on Hypertensive Patients With Low-Salt Intake: Shika Study ResultsCited by: 7
Author(s): Satoshi Nagase, Shigehiro Karashima, Hiromasa Tsujiguchi, Hirohito Tsuboi, Sakae Miyagi, Mitsuhiro Kometani, Daisuke Aono, Takuya Higashitani, Masashi Demura, Hiroyuki Sakakibara, Akihiro Yoshida, Akinori Hara, Hiroyuki Nakamura, Yoshiyu Takeda, Hidetaka Nambo, Takashi Yoneda, Shigefumi Okamoto
Software Mentions: 5
Published: almost 6 years ago
10.1186/gm377
Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survivalCited by: 47
Author(s): Pär G. Engström, Diva Tommei, Stefan H. Stricker, Christine Ender, Steven M. Pollard, Paul Bertone
Software Mentions: 5
Published: over 14 years ago
10.1186/s13059-021-02294-2
seqQscorer: automated quality control of next-generation sequencing data using machine learningCited by: 9
Author(s): Steffen Albrecht, Maximilian Sprang, Miguel A. Andrade‐Navarro, Jean-Fred Fontaine
Software Mentions: 5
Published: over 5 years ago
10.3389/fmicb.2018.02382
Chronic Physical Disturbance Substantially Alters the Response of Biological Soil Crusts to a Wetting Pulse, as Characterized by Metatranscriptomic SequencingCited by: 23
Author(s): Blaire Steven, Jayne Belnap, Cheryl R. Kuske
Software Mentions: 5
Published: almost 8 years ago
10.1038/s41598-020-77284-8
Lung squamous cell carcinoma and lung adenocarcinoma differential gene expression regulation through pathways of Notch, Hedgehog, Wnt, and ErbB signallingCited by: 34
Author(s): Dorota Anusewicz, Magdalena Orzechowska, Andrzej K. Bednarek
Software Mentions: 5
Published: over 5 years ago
10.1038/srep05193
Quantitative scoring of differential drug sensitivity for individually optimized anticancer therapiesCited by: 230
Author(s): Bhagwan Yadav, Tea Pemovska, Agnieszka Szwajda, Evgeny Kulesskiy, Mika Kontro, Reijo Karjalainen, Muntasir Mamun Majumder, Disha Malani, Astrid Murumägi, Jonathan Knowles, Kimmo Porkka, Caroline A. Heckman, Olli Kallioniemi, Krister Wennerberg, Tero Aittokallio
Software Mentions: 5
Published: about 12 years ago
10.1534/g3.119.400378
Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov ModelsCited by: 54
Author(s): Marcelo Mollinari, Antônio Augusto Franco Garcia
Software Mentions: 5
Published: almost 7 years ago
10.3389/fmicb.2021.705712
Dual Transcriptomic Analyses Unveil Host–Pathogen Interactions Between Salmonella enterica Serovar Enteritidis and Laying Ducks (Anas platyrhynchos)Cited by: 1
Author(s): Yu Zhang, Lina Song, Li-e Hou, Zhen Cao, Wanwipa Vongsangnak, Guoqiang Zhu, Qi Xu, Guohong Chen
Software Mentions: 5
Published: almost 5 years ago
10.3389/fonc.2018.00360
Novel Nomogram for Preoperative Prediction of Early Recurrence in Intrahepatic CholangiocarcinomaCited by: 79
Author(s): Wenjie Liang, Lei Xu, Pengfei Yang, Lele Zhang, Dalong Wan, Qiang Huang, Tianye Niu, Feng Chen
Software Mentions: 5
Published: almost 8 years ago
10.1155/2021/5588429
Crosstalk between RNA-Binding Proteins and Immune Microenvironment Revealed Two RBP Regulatory Patterns with Distinct Immunophenotypes in PeriodontitisCited by: 0
Author(s): Xing Lü, Guanqun Meng, Tian Chen, Xiaoqi Zhang, Ding Bai, Hui Xu
Software Mentions: 5
Published: about 5 years ago
10.1007/s00180-021-01102-6
Direct statistical inference for finite Markov jump processes via the matrix exponentialCited by: 5
Author(s): Chris Sherlock
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0098361
Range-Wide Latitudinal and Elevational Temperature Gradients for the World's Terrestrial Birds: Implications under Global Climate ChangeCited by: 38
Author(s): Frank A. La Sorte, Stuart H. M. Butchart, Walter Jetz, Katrin Böhning‐Gaese
Software Mentions: 5
Published: about 12 years ago
10.1002/advs.202004973
In Vivo Induction of Regulatory T Cells Via CTLA‐4 Signaling Peptide to Control Autoimmune Encephalomyelitis and Prevent Disease RelapseCited by: 13
Author(s): Gil Ran Kim, Won-Ju Kim, Su-Ho Lim, Hong-Gyun Lee, Ja Hyun Koo, Kyung Ho Nam, Sung Min Kim, Sung Dong Park, Je-Min Choi
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0216847
Significantly different expression levels of microRNAs associated with vascular invasion in hepatocellular carcinoma and their prognostic significance after surgical resectionCited by: 13
Author(s): Sung Kyu Song, Woon Yong Jung, Yun Chan Kang, Chul‐Woon Chung, YongKeun Park
Software Mentions: 5
Published: almost 7 years ago
10.3389/fmicb.2018.02015
The RNA Complement of Outer Membrane Vesicles From Salmonella enterica Serovar Typhimurium Under Distinct Culture ConditionsCited by: 46
Author(s): Antoine Malabirade, Janine Habier, Anna Heintz‐Buschart, Patrick May, Julien Godet, Rashi Halder, Alton Etheridge, David J. Galas, Paul Wilmes, Joëlle V. Fritz
Software Mentions: 5
Published: almost 8 years ago
10.7150/ijms.39056
Identification of gene expression profiles and immune cell infiltration signatures between low and high tumor mutation burden groups in bladder cancerCited by: 33
Author(s): Zonglong Wu, Mu-Ru Wang, Qinggang Liu, Yaxiao Liu, Ke-Cheng Zhu, Lipeng Chen, Hongda Guo, Yan Li, Benkang Shi
Software Mentions: 5
Published: over 6 years ago
10.7554/eLife.66904
Defects in translation-dependent quality control pathways lead to convergent molecular and neurodevelopmental pathologyCited by: 14
Author(s): Markus Terrey, Scott I. Adamson, Jeffrey H. Chuang, Susan L. Ackerman
Software Mentions: 5
Published: about 5 years ago
10.3389/fendo.2021.632060
Isolating the Role of Corticosterone in the Hypothalamic-Pituitary-Gonadal Transcriptomic Stress ResponseCited by: 8
Author(s): Suzanne H. Austin, Rayna M. Harris, April M. Booth, Andrew S. Lang, Victoria S. Farrar, Jesse S. Krause, Tyler A. Hallman, Matthew D. MacManes, Rebecca M. Calisi
Software Mentions: 5
Published: about 5 years ago
10.1038/s42003-021-01892-x
Transcriptomic analyses of the termite, Cryptotermes secundus, reveal a gene network underlying a long lifespan and high fecundityCited by: 15
Author(s): Silu Lin, Jana Werle, Judith Korb
Software Mentions: 5
Published: over 5 years ago
10.7150/ijbs.45050
A Novel Ferroptosis-related Gene Signature for Overall Survival Prediction in Patients with Hepatocellular CarcinomaCited by: 342
Author(s): Jie Liang, De-Shen Wang, Haocheng Lin, Xiuxing Chen, Hui Yang, Yun Zheng, Yuhong Li
Software Mentions: 5
Published: over 6 years ago
10.3389/fnhum.2021.632702
Trajectories of Mother-Infant Communication: An Experiential Measure of the Impacts of Early Life AdversityCited by: 8
Author(s): Lauren Granata, Alissa Valentine, Jason L. Hirsch, Prabarna Ganguly, Heather C. Brenhouse
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-020-58661-9
Domestication leads to increased predation susceptibilityCited by: 30
Author(s): Monica Favnebøe Solberg, Grethe Robertsen, Line Elisabeth Breivik Sundt-Hansen, Kjetil Hindar, Kevin A. Glover
Software Mentions: 5
Published: over 6 years ago
10.3389/fmicb.2017.02293
Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon UseCited by: 35
Author(s): Melissa M. Arcand, David J. Levy‐Booth, Bobbi L. Helgason
Software Mentions: 5
Published: over 8 years ago
10.1038/s41398-019-0384-y
Analysis of whole genome-transcriptomic organization in brain to identify genes associated with alcoholismCited by: 63
Author(s): Manav Kapoor, Jen Chyong Wang, Sean P. Farris, Yunlong Liu, Jeanette N. McClintick, Ishaan Gupta, Jacquelyn L. Meyers, Sarah Bertelsen, Michael J. Chao, John I. Nürnberger, Jay A. Tischfield, Oscar Harari, Zeran Li, Victor Hesselbrock, Lance O. Bauer, Towfique Raj, Bernice Porjesz, Arpana Agrawal, Tatiana Foroud, Howard J. Edenberg, R. Dayne Mayfield, Alison Goate
Software Mentions: 5
Published: over 7 years ago
10.3389/fmicb.2021.683685
Characterization of Supragingival Plaque and Oral Swab Microbiomes in Children With Severe Early Childhood CariesCited by: 13
Author(s): Vivianne Cruz de Jesus, Mohd Wasif Khan, Betty-Anne Mittermuller, Kangmin Duan, Pingzhao Hu, Robert J Schroth, Prashen Chelikani
Software Mentions: 5
Published: about 5 years ago
10.7717/peerj.6448
The draft genome of strain <i>c</i>Cpun from biting midges confirms insect <i>Cardinium</i> are not a monophyletic group and reveals a novel gene family expansion in a symbiontCited by: 10
Author(s): Stefanos Siozios, Jack Pilgrim, Alistair C. Darby, Matthew Baylis, Gregory D. D. Hurst
Software Mentions: 5
Published: over 7 years ago
10.1186/s12860-019-0199-y
Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial doseCited by: 14
Author(s): MA Wei-hua, Jaeyop Lee, Daniel Backenroth, Yu Zhou, Erin C. Bush, Peter A. Sims, Kang Liu, Yufeng Shen
Software Mentions: 5
Published: about 7 years ago
10.1038/s41392-020-00457-4
Longitudinal transcriptome analyses show robust T cell immunity during recovery from COVID-19Cited by: 55
Author(s): Hong Zheng, Min Xu, Cui Xian Yang, Ren Rong Tian, Mi Zhang, Jian Jian Li, Xi Cheng Wang, Zhao Ding, Gui Mei Li, Xiaolu Li, Yu He, Xing-qi Dong, Yong Yao, Yong Zheng
Software Mentions: 5
Published: over 5 years ago
10.3389/fmicb.2021.665858
Multi-Omics Approach Reveals the Potential Core Vaccine Targets for the Emerging Foodborne Pathogen Campylobacter jejuniCited by: 6
Author(s): Hai‐Yan Cao, Hanxiao Xu, Ning Cai, Xiang Li, Ren Qiu-fang, Tiantian Zhang, Yusen Zhang, Rui Gao
Software Mentions: 5
Published: about 5 years ago
10.1186/s12859-019-2645-4
reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure predictionCited by: 5
Author(s): Risa Karakida Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
Software Mentions: 5
Published: over 7 years ago
10.1186/s12864-019-6003-8
RNAi based transcriptome suggests genes potentially regulated by HSF1 in the Pacific oyster Crassostrea gigas under thermal stressCited by: 14
Author(s): Youli Liu, Li Li, Baoyu Huang, Wei Wang, Guofan Zhang
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pone.0203625
Mean platelet volume and lymphocyte-to-monocyte ratio are associated with shorter progression-free survival in EGFR-mutant lung adenocarcinoma treated by EGFR tyrosine kinase inhibitorCited by: 28
Author(s): Kousuke Watanabe, Atsushi Yasumoto, Yosuke Amano, Hidenori Kage, Yasushi Goto, Yutaka Yatomi, Daiya Takai, Takahide Nagase
Software Mentions: 5
Published: almost 8 years ago
10.1371/journal.pone.0115740
Allele Workbench: Transcriptome Pipeline and Interactive Graphics for Allele-Specific ExpressionCited by: 10
Author(s): Carol Soderlund, William M. Nelson, Stephen A. Goff
Software Mentions: 4
Published: over 11 years ago
10.1186/s12864-016-2646-x
A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related speciesCited by: 25
Author(s): Montserrat Torres-Oliva, Isabel Almudí, Alistair P. McGregor, Nico Posnien
Software Mentions: 4
Published: about 10 years ago
10.3389/fnmol.2021.624881
Identification of Natural Antisense Transcripts in Mouse Brain and Their Association With Autism Spectrum Disorder Risk GenesCited by: 0
Author(s): Baran Koç, Geoffrey Fucile, Roland Schmucki, Nicolas Giroud, Tobias Bergauer, Benjamin J. Hall
Software Mentions: 4
Published: over 5 years ago
10.3389/fphar.2021.646701
Aripiprazole as a Candidate Treatment of COVID-19 Identified Through Genomic AnalysisCited by: 22
Author(s): Benedicto Crespo‐Facorro, Miguel Ruiz‐Veguilla, Javier Vázquez-Bourgon, Ana C. Sánchez-Hidalgo, Nathalia Garrido-Torres, José Miguel Cisneros, Carlos Prieto, Jesús Sainz
Software Mentions: 4
Published: over 5 years ago
10.3389/fnins.2021.605654
Alteration of N6 -Methyladenosine mRNA Methylation in a Rat Model of Cerebral Ischemia–Reperfusion InjuryCited by: 34
Author(s): Dazhuang Yi, Qunhui Wang, Yuhao Zhao, Shuhui Yu, Hong You, Jian Wang, Renjie Liu, Shi Zhong-qiang, Xuan Chen, Qi Luo
Software Mentions: 4
Published: over 5 years ago
10.1155/2020/2137319
Identification of Four Pathological Stage-Relevant Genes in Association with Progression and Prognosis in Clear Cell Renal Cell Carcinoma by Integrated Bioinformatics AnalysisCited by: 5
Author(s): Dengyong Xu, Yuzi Xu, Yiming Lv, Fei Wu, Yunlong Liu, Ming Zhu, Dake Chen, Bingjun Bai
Software Mentions: 4
Published: over 6 years ago
10.1186/s12967-021-02955-7
Multi-institutional development and external validation of machine learning-based models to predict relapse risk of pancreatic ductal adenocarcinoma after radical resectionCited by: 10
Author(s): Xiawei Li, Lifen Yang, Zhao-Feng Yuan, Jianyao Lou, Yiqun Fan, Aiguang Shi, Jiquan Huang, Mingchen Zhao, Yulian Wu
Software Mentions: 4
Published: about 5 years ago
10.1155/2020/8604340
<i>MCM2</i>and<i>NUSAP1</i>Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic CancerCited by: 16
Author(s): Yajun Deng, Hanyun Ma, Jinyong Hao, Qiqi Xie, Rui Zhao
Software Mentions: 4
Published: about 6 years ago
10.1016/j.celrep.2020.107748
Chromatin Priming Renders T Cell Tolerance-Associated Genes Sensitive to Activation below the Signaling Threshold for Immune Response GenesCited by: 20
Author(s): Sarah L Bevington, Sky T. H. Ng, Graham J. Britton, Peter Keane, David C. Wraith, Peter N. Cockerill
Software Mentions: 4
Published: about 6 years ago
10.1126/sciadv.abf7346
Functional coordination of BET family proteins underlies altered transcription associated with memory impairment in fragile X syndromeCited by: 4
Author(s): Seung Kyoon Kim, Xihui Liu, Jong-Min Park, Dahun Um, Gokhul Kilaru, Cheng Ming Chiang, Min-Hee Kang, Kimberly M. Huber, Keunsoo Kang, Tae Kyung Kim
Software Mentions: 4
Published: about 5 years ago
10.1126/sciadv.abf9808
Mechanisms underlying divergent responses of genetically distinct macrophages to IL-4Cited by: 23
Author(s): Marten A. Hoeksema, Zeyang Shen, Inge R. Holtman, An Zheng, Nathan Spann, Isidoro Cobo, Melissa Gymrek, Christopher K. Glass
Software Mentions: 4
Published: about 5 years ago
10.1126/sciadv.abg5982
Single-cell analyses unravel cell type–specific responses to a vitamin D analog in prostatic precancerous lesionsCited by: 9
Author(s): Mohamed A. Abu el Maaty, Élise Grelet, Céline Keime, Anna‐Isavella Rerra, Justine Gantzer, C. Emprou, Julie Terzic, Régis Lutzing, Jean‐Marc Bornert, Gilles Laverny, Daniel Metzger
Software Mentions: 4
Published: almost 5 years ago
10.1155/2020/9084901
FcircSEC: An R Package for Full Length circRNA Sequence Extraction and ClassificationCited by: 7
Author(s): Tofazzal Hossain, Yin Peng, Shijie Feng, Yanjie Wei
Software Mentions: 4
Published: about 6 years ago
10.1038/sdata.2017.33
Transcriptomic profiling of 39 commonly-used neuroblastoma cell linesCited by: 102
Author(s): Jo Lynne Harenza, Maura Diamond, Rebecca N. Adams, Michael Song, Heather L. Davidson, Lori S. Hart, Maiah H. Dent, Paolo Fortina, C. Patrick Reynolds, John M. Maris
Software Mentions: 4
Published: over 9 years ago
10.3389/fnins.2020.562292
Human iPSC-Derived Neuronal Cells From CTBP1-Mutated Patients Reveal Altered Expression of Neurodevelopmental Gene NetworksCited by: 5
Author(s): S. Vijayalingam, Uthayashanker R. Ezekiel, Fenglian Xu, T. Subramanian, Elizabeth Geerling, Brittany Hoelscher, KayKay San, Aravinda Ganapathy, Kyle Pemberton, Eric Tycksen, Amelia K. Pinto, James D. Brien, David B. Beck, Wendy K. Chung, Christina A. Gurnett, G. Chinnadurai
Software Mentions: 4
Published: over 5 years ago
10.1186/s40814-020-00751-6
A 16-week aerobic exercise and mindfulness-based intervention on chronic psychosocial stress: a pilot and feasibility studyCited by: 2
Author(s): Guy A Prochilo, Ricardo J. S. Costa, Craig Hassed, Richard Chambers, Pascal Molenberghs
Software Mentions: 4
Published: over 5 years ago
10.18632/aging.202765
Pan-cancer analysis identifies ITIH1 as a novel prognostic indicator for hepatocellular carcinomaCited by: 7
Author(s): Q Q Chang, Ting Mao, Tao Yan, Tao Dong, Xuan-xuan Tang, Ge Gao, Zi‐jun Xu
Software Mentions: 4
Published: over 5 years ago
10.3390/microorganisms9071495
Resilience of Microbial Communities after Hydrogen Peroxide Treatment of a Eutrophic Lake to Suppress Harmful Cyanobacterial BloomsCited by: 15
Author(s): Tim Piel, Giovanni Sandrini, Gerard Muyzer, Corina P. D. Brussaard, Pieter C. Slot, Maria J. van Herk, Jef Huisman, P. Visser
Software Mentions: 4
Published: about 5 years ago
10.1016/j.celrep.2019.02.012
Rapid Depletion of DIS3, EXOSC10, or XRN2 Reveals the Immediate Impact of Exoribonucleolysis on Nuclear RNA Metabolism and Transcriptional ControlCited by: 56
Author(s): Lee Davidson, Laura Francis, Ross A. Cordiner, Joshua D. Eaton, Chris Estell, Sara Macías, Javier F. Cáceres, Steven West
Software Mentions: 4
Published: over 7 years ago
10.1186/s40635-020-00335-x
Alkaline phosphatase in pulmonary inflammation—a translational study in ventilated critically ill patients and ratsCited by: 6
Author(s): Jenny Juschten, Sarah A. Ingelse, Lieuwe D. J. Bos, Armand R. J. Girbes, Nicole P. Juffermans, Tom van der Poll, Marcus J. Schultz, Pieter R. Tuinman
Software Mentions: 4
Published: over 5 years ago
10.3389/fimmu.2021.663736
MicroRNA Expression Differences in Blood-Derived CD19+ B Cells of Methotrexate Treated Rheumatoid Arthritis PatientsCited by: 8
Author(s): Fatima Heinicke, Xiao Zhong, Siri Tennebø Flåm, Johannes Breidenbach, Magnus Leithaug, Marthe Thoresen Mæhlen, Siri Lillegraven, Anna‐Birgitte Aga, Ellen Sauar Norli, Maria D Mjaavatten, Espen A. Haavardsholm, Manuela Zucknick, Simon Rayner, Benedicte A. Lie
Software Mentions: 4
Published: over 5 years ago
10.3389/fimmu.2019.01625
Computational Analysis of HLA-presentation of Non-synonymous Recipient Mismatches Indicates Effect on the Risk of Chronic Graft-vs.-Host Disease After Allogeneic HSCTCited by: 8
Author(s): Jarmo Ritari, Kati Hyvärinen, Satu Koskela, Riitta Niittyvuopio, Anne Nihtinen, Urpu Salmenniemi, Matti Putkonen, Liisa Volin, Tony Kwan, Tomi Pastinen, Maija Itälä‐Remes, Jukka Partanen
Software Mentions: 4
Published: about 7 years ago
10.3389/fimmu.2018.01693
Immunophenotype and Transcriptome Profile of Patients With Multiple Sclerosis Treated With Fingolimod: Setting Up a Model for Prediction of Response in a 2-Year Translational StudyCited by: 28
Author(s): Ivo Torres, C. Garcı́a, Marco Marconi, Aránzazu García-Grande, Luis Rodríguez‐Esparragoza, Vı́ctor Elvira, Elvira Ramil, Lucía Campos-Ruíz, Ruth García-Hernández, Fátima Al‐Shahrour, Coral Fustero-Torre, Alicia Sánchez-Sanz, Antonio Garcı́a-Merino, A.J. Sánchez López
Software Mentions: 4
Published: almost 8 years ago