10.1371/journal.pone.0092725

ss3sim: An R Package for Fisheries Stock Assessment Simulation with Stock Synthesis
Cited by: 19
Author(s): Sean C. Anderson, Cole C. Monnahan, Kelli F. Johnson, Kotaro Ono, Juan L. Valero
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0247037

A new perspective and assessment measure for common dissociative experiences: ‘Felt Sense of Anomaly’
Cited by: 10
Author(s): Emma Černis, Esther T. Beierl, Andrew Molodynski, Anke Ehlers, Daniel Freeman
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.64618

Genomic epidemiology of COVID-19 in care homes in the east of England
Cited by: 17
Author(s): William L. Hamilton, Gerry Tonkin‐Hill, Darren Smith, Dinesh Aggarwal, Charlotte J. Houldcroft, Ben Warne, Luke W. Meredith, Myra Hosmillo, Aminu S. Jahun, Martin D. Curran, Surendra Parmar, Laura Caller, Sarah Caddy, Fahad Khokhar, Anna Yakovleva, Grant Hall, Theresa Feltwell, Malte L. Pinckert, Iliana Georgana, Yasmin Chaudhry, Colin Brown, Sónia Gonçalves, Roberto Amato, Ewan M. Harrison, Nicholas Brown, Mathew A. Beale, Michael Spencer Chapman, David Jackson, Ian Johnston, Alex Alderton, John Sillitoe, Cordelia Langford, Gordon Dougan, Sharon J. Peacock, Dominic P Kwiatowski, Ian Goodfellow, M. Estée Török
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0242955

Lessons from movement ecology for the return to work: Modeling contacts and the spread of COVID-19
Cited by: 4
Author(s): Allison K. Shaw, Lauren A. White, Matthew Michalska‐Smith, Elizabeth T. Borer, Meggan E. Craft, Eric W. Seabloom, Emilie C. Snell‐Rood, Michael Travisano
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0164865

Effects of Secondary Hyperparathyroidism Treatment on Improvement in Anemia: Results from the MBD-5D Study
Cited by: 23
Author(s): Motoko Tanaka, Kazuki Yoshida, Shingo Fukuma, Kazuko Ito, Kazutaka Matsushita, Masafumi Fukagawa, Shunichi Fukuhara, Tadao Akizawa
Software Mentions: 5
Published: almost 10 years ago

10.1111/jcmm.14556

A prognostic 10‐lncRNA expression signature for predicting the risk of tumour recurrence in breast cancer patients
Cited by: 16
Author(s): Jianing Tang, Jiangbo Ren, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Mengxin Lü, Yan Gong
Software Mentions: 5
Published: almost 7 years ago

10.1093/gbe/evaa223

Evolutionary and Comparative Analysis of Bacterial Nonhomologous End Joining Repair
Cited by: 16
Author(s): Mohak Sharda, Anjana Badrinarayanan, Aswin Sai Narain Seshasayee
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2019.01491

Genomic Characterization of Jumbo Salmonella Phages That Effectively Target United Kingdom Pig-Associated Salmonella Serotypes
Cited by: 26
Author(s): Anisha M. Thanki, Nathan Brown, Andrew Millard, Martha R. J. Clokie
Software Mentions: 5
Published: about 7 years ago

10.1186/s13148-021-01018-4

Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects
Cited by: 44
Author(s): Colette Christiansen, Juan Castillo-Fernandez, Arce Domingo‐Relloso, Wei Zhao, Julia S. El-Sayed Moustafa, Pei-Chien Tsai, Jane Maddock, Karin Haack, Shelley A. Cole, Sharon L.R. Kardia, Mariam Molokhia, Matthew Suderman, Chris Power, Caroline L Relton, Andrew Wong, Diana Kuh, Alissa Goodman, Kerrin S. Small, Jennifer A. Smith, María Téllez-Plaza, Ana Navas-Acién, George B. Ploubidis, Rebecca Hardy, Jordana T. Bell
Software Mentions: 5
Published: over 5 years ago

10.1155/2020/8068913

Machine Learning Analysis of Image Data Based on Detailed MR Image Reports for Nasopharyngeal Carcinoma Prognosis
Cited by: 13
Author(s): Chunyan Cui, Shunxin Wang, Jian Zhou, Annan Dong, Fei Xie, Haojiang Li, Lizhi Liu
Software Mentions: 5
Published: over 6 years ago

10.1080/15592294.2019.1710913

A regulatory role for CHD2 in myelopoiesis
Cited by: 5
Author(s): Farzaneh Shahin Varnoosfaderani, Anna M. Palau, Wenbo Dong, Jenna Persson, Mickaël Durand-Dubief, J. Peter Svensson, Andreas Lennartsson
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.01663

Cultivation and Genomics Prove Long-Term Colonization of Donor’s Bifidobacteria in Recurrent Clostridioides difficile Patients Treated With Fecal Microbiota Transplantation
Cited by: 7
Author(s): Hanne Jouhten, Aki Ronkainen, Juhani Aakko, Seppo Salminen, Eero Mattila, Perttu Arkkila, Reetta Satokari
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pntd.0009504

Developmental changes and metabolic reprogramming during establishment of infection and progression of Trypanosoma brucei brucei through its insect host
Cited by: 16
Author(s): Arunasalam Naguleswaran, Paula Fernandes, Shubha Bevkal, Ruth Rehmann, Pamela Nicholson, Isabel Roditi
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.36521

Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly
Cited by: 129
Author(s): Inés Martínez, María X. Maldonado-Gómez, João Carlos Gomes-Neto, Hatem Kittana, Hua Ding, Robert Schmaltz, Payal Joglekar, Roberto Jiménez Cardona, Nathan L. Marsteller, Steven W. Kembel, Andrew K. Benson, Daniel A. Peterson, Amanda E. Ramer‐Tait, Jens Walter
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.ppat.1004856

An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation
Cited by: 27
Author(s): Jason E. Shoemaker, Satoru Fukuyama, Amie J. Eisfeld, Dongming Zhao, Eiryo Kawakami, Saori Sakabe, Tadashi Maemura, Takeo Gorai, Hiroaki Katsura, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Ken Fuji, Yoshikazu Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka
Software Mentions: 5
Published: about 11 years ago

10.1002/ece3.3942

Heard but not seen: Comparing bat assemblages and study methods in a mosaic landscape in the Western Ghats of India
Cited by: 16
Author(s): Claire F. R. Wordley, Mahesh Sankaran, Divya Mudappa, John D. Altringham
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2018.02227

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats
Cited by: 19
Author(s): Leticia Abecia, Gonzalo Martínez Fernández, Kate Waddams, A. I. Martin-García, Eric Pinloche, Christopher J. Creevey, Stuart E. Denman, C. J. Newbold, D. R. Yáñez-Ruíz
Software Mentions: 5
Published: almost 8 years ago

10.1098/rsos.201795

Understanding spatial patterns in rape reporting delays
Cited by: 5
Author(s): Konstantin Klemmer, Daniel B. Neill, Stephen A. Jarvis
Software Mentions: 5
Published: over 5 years ago

10.1128/mBio.00311-19

Gut Microbiota and Phytoestrogen-Associated Infertility in Southern White Rhinoceros
Cited by: 32
Author(s): Candace L. Williams, Alexis R. Ybarra, Ashley N. Meredith, Barbara S. Durrant, Christopher W. Tubbs
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0241231

A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
Cited by: 7
Author(s): Joel H. Nitta, Atsushi Ebihara, Alan Р. Smith
Software Mentions: 5
Published: over 5 years ago

10.1186/s13014-020-01699-w

Imaging biomarkers of contrast-enhanced computed tomography predict survival in oesophageal cancer after definitive concurrent chemoradiotherapy
Cited by: 4
Author(s): Chengbing Zeng, Tian‐Tian Zhai, Jianzhou Chen, Longjia Guo, Bao-Tian Huang, Hong Guo, Guozhi Lv, Tingting Zhuang, Weitong Liu, Ting Luo, Yanxuan Wu, Guopeng Peng, Derui Li, Chuangzhen Chen
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.629449

Diversity of Weissella confusa in Pozol and Its Carbohydrate Metabolism
Cited by: 5
Author(s): Diana Hernández-Oaxaca, Rafael López-Sánchez, Luis Lozano, Carmen Wacher, Lorenzo Segovia, Agustín López Munguía
Software Mentions: 5
Published: over 5 years ago

10.1128/mBio.02333-17

Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface
Cited by: 49
Author(s): Xavier Carette, John Platig, David C. Young, Michaela Helmel, A. E. Young, Zhe Wang, Lakshmi-Prasad Potluri, Cameron Stuver Moody, Jumei Zeng, Sladjana Prisic, Joseph N. Paulson, Jan Muntel, Ashoka V. R. Madduri, Jorge J. Velarde, Jacob A. Mayfield, Christopher P. Locher, Tiansheng Wang, John Quackenbush, Kyu Y. Rhee, D. Branch Moody, Hanno Steen, Robert N. Husson
Software Mentions: 5
Published: about 8 years ago

10.1128/mSphere.00511-17

Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus
Cited by: 9
Author(s): Tatum D Mortimer, Douglas S. Annis, Mary O’Neill, Lindsey L. Bohr, Tracy M. Smith, Hendrik N. Poinar, Deane F. Mosher, Caitlin S. Pepperell
Software Mentions: 5
Published: over 8 years ago

10.1186/s12870-020-02814-5

Integrated analysis of DNA methylome and transcriptome reveals epigenetic regulation of CAM photosynthesis in pineapple
Cited by: 8
Author(s): Yan Shi, Xingtan Zhang, Xiaojun Chang, Mei Yan, Hui Zhao, Yuan Qin, Haifeng Wang
Software Mentions: 5
Published: over 5 years ago

10.15252/emmm.202113953

Intrathecal activation of CD8 ⁺ memory T cells in IgG4‐related disease of the brain parenchyma
Cited by: 5
Author(s): Mirco Friedrich, Niklas Kehl, Niko Engelke, Josephine Kraus, Katharina A.M. Lindner, Philipp Münch, Iris Mildenberger, Christoph Groden, Achim Gass, Nima Etminan, Marc Fatar, Andreas von Deimling, David Reuß, Michael Platten, Lukas Bunse
Software Mentions: 5
Published: about 5 years ago

10.7554/eLife.20375

Oral transfer of chemical cues, growth proteins and hormones in social insects
Cited by: 96
Author(s): Adria C LeBoeuf, Patrice Waridel, Colin S. Brent, André Nicolau Aquime Gonçalves, Laure Menin, Daniel Ortiz, Oksana Riba‐Grognuz, Atsuo Koto, Zamira Guerra Soares, Eyal Privman, Eric A. Miska, Richard Benton, Laurent Keller
Software Mentions: 5
Published: over 9 years ago

10.3389/fgene.2020.00055

Establishment of a Prognostic Model Using Immune-Related Genes in Patients With Hepatocellular Carcinoma
Cited by: 14
Author(s): Wenjie Wang, Han Wang, Ting-yan Hua, Wei Song, Jie Zhu, Jingjing Wang, Yongzhen Huang, Zhi-Liang Ding
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-016-2386-y

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics
Cited by: 103
Author(s): Viktor Jönsson, Tobias Österlund, Olle Nerman, Erik Kristiansson
Software Mentions: 5
Published: over 10 years ago

10.1098/rsos.191459

Predicting maths anxiety from mathematical achievement across the transition from primary to secondary education
Cited by: 16
Author(s): Andy P. Field, Danielle Evans, Tomasz Bloniewski, Yulia Kovas
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2017.02667

Low Light Availability Alters Root Exudation and Reduces Putative Beneficial Microorganisms in Seagrass Roots
Cited by: 55
Author(s): Belinda C. Martin, Deirdre Gleeson, John Statton, Andre R. Siebers, Pauline F. Grierson, Megan H. Ryan, Gary A. Kendrick
Software Mentions: 5
Published: over 8 years ago

10.17179/excli2017-304

Postmenopausal hormone and the risk of nephrolithiasis: A meta-analysis.
Cited by: 1
Author(s): Juan Yu, Binyan Yin
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0086272

Robust Regression Analysis of Copy Number Variation Data based on a Univariate Score
Cited by: 4
Author(s): Glen A. Satten, Andrew S. Allen, Morna Ikeda, Jennifer G. Mullé, Stephen T. Warren
Software Mentions: 5
Published: over 12 years ago

10.3390/microorganisms9010064

Rock Surface Fungi in Deep Continental Biosphere—Exploration of Microbial Community Formation with Subsurface In Situ Biofilm Trap
Cited by: 8
Author(s): Maija Nuppunen-Puputti, Riikka Kietäväinen, Lotta Purkamo, Pauliina Rajala, Merja Itävaara, Ilmo Kukkonen, Malin Bomberg
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.607622

Identification and Verification of Immune-Related Gene Prognostic Signature Based on ssGSEA for Osteosarcoma
Cited by: 96
Author(s): Bo Xiao, Liyan Liu, Aoyu Li, Xiang Cheng, Pingxiao Wang, Hui Li, Tao Xiao
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-46718-3

Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning
Cited by: 124
Author(s): Sairam Tabibu, P. K. Vinod, C. V. Jawahar
Software Mentions: 5
Published: about 7 years ago

10.7554/eLife.60100

Sequential perturbations to mouse corticogenesis following in utero maternal immune activation
Cited by: 15
Author(s): Cesar P Canales, Myka L. Estes, Karol Cichewicz, Kartik Angara, John Paul Aboubechara, Scott A. Cameron, Kathryn Prendergast, Linda Su-Feher, Iva Zdilar, Ellie J Kreun, Emma C Connolly, Jin Myeong Seo, Jack B Goon, Kathleen Farrelly, Tyler W. Stradleigh, Deborah van der List, Lori Haapanen, Judy Van de Water, Daniel Vogt, A. Kimberley McAllister, A. Nord
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0001218

Evidence for a Peak Shift in a Humoral Response to Helminths: Age Profiles of IgE in the Shuar of Ecuador, the Tsimane of Bolivia, and the U.S. NHANES
Cited by: 77
Author(s): Aaron D. Blackwell, Michael Gurven, Lawrence S. Sugiyama, Felicia C. Madimenos, Melissa A. Liebert, Mary C. Martin, Hillard Kaplan, J. Josh Snodgrass
Software Mentions: 5
Published: about 15 years ago

10.1038/s41598-019-53811-0

An integrated nomogram combining lncRNAs classifier and clinicopathologic factors to predict the recurrence of head and neck squamous cell carcinoma
Cited by: 4
Author(s): Jie Cui, Qingquan Wen, Xiaojie Tan, Jinsong Piao, Qiong Zhang, Qian Wang, Lizhen He, Yan Wang, Zhe Chen, Genglong Liu
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0213066

HIV-related posts from a Chinese internet discussion forum: An exploratory study
Cited by: 7
Author(s): Yuan Dong, Xin Zhou, Yi‐Han Lin, Qichao Pan, Ying Wang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0172811

Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis
Cited by: 61
Author(s): Fiona Whelan, Alya Heirali, Laura Rossi, Harvey Rabin, Michael D. Parkins, Michael G. Surette
Software Mentions: 5
Published: over 9 years ago

10.1186/s13059-021-02497-7

SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAs
Cited by: 7
Author(s): Alon Rabin, Michela Zaffagni, Reut Ashwal-Fluss, Inés Lucía Patop, Aarti Jajoo, Shlomo Shenzis, Liran Carmel, Sebastián Kadener
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13059-021-02376-1

A systematic dissection of the epigenomic heterogeneity of lung adenocarcinoma reveals two different subclasses with distinct prognosis and core regulatory networks
Cited by: 15
Author(s): Chongze Yuan, Haojie Chen, Shiqi Tu, Hsin Yi Huang, Yunjian Pan, Xiuqi Gui, Muyu Kuang, Xuxia Shen, Qiang Zheng, Yang Zhang, Chao Cheng, Hui Hong, Xiaoting Tao, Yizhou Peng, Xingxin Yao, Fei-Long Meng, Hongbin Ji, Zongshu Shao, Yihua Sun
Software Mentions: 5
Published: about 5 years ago

10.1186/s13072-016-0079-z

Epigenetic dynamics of monocyte-to-macrophage differentiation
Cited by: 71
Author(s): Stefan Wallner, Christopher Schröder, Elsa Leitão, Tea Berulava, Claudia Haak, Daniela Beißer, Sven Rahmann, Andreas S. Richter, Thomas Manke, Ulrike Bönisch, Laura Arrigoni, Sebastian Fröhler, Filippos Klironomos, Wei Chen, Nikolaus Rajewsky, Fabian Müller, Peter Ebert, Thomas Lengauer, Matthias Barann, Philip Rosenstiel, Gilles Gasparoni, Karl Nordström, Jörn Walter, Benedikt Brors, Gideon Zipprich, Bärbel Felder, Ludger Klein-Hitpaß, Corinna Attenberger, Gerd Schmitz, Bernhard Horsthemke
Software Mentions: 5
Published: almost 10 years ago

10.3389/fmicb.2019.02798

The Compositionally Distinct Cyanobacterial Biocrusts From Brazilian Savanna and Their Environmental Drivers of Community Diversity
Cited by: 22
Author(s): Nathali Machado de Lima, Vanessa Moreira Câmara Fernandes, Daniel Roush, Sergio Velasco Ayuso, Janaína Rigonato, Ferrán García-Pichel, Luis Henrique Zanini Branco
Software Mentions: 5
Published: over 6 years ago

10.1186/s41016-021-00235-3

The increasing expression of GPX7 related to the malignant clinical features leading to poor prognosis of glioma patients
Cited by: 5
Author(s): Jiawei Yao, Xin Chen, Zhendong Liu, Ruotian Zhang, Cheng Zhang, Quan Yang, Penglei Yao, Qiuyi Jiang, Jianing Wu, Shen Zhao
Software Mentions: 5
Published: over 5 years ago

10.3389/fphar.2018.00305

Frequency of CYP2D6 Alleles Including Structural Variants in the United States
Cited by: 81
Author(s): Andria L. Del Tredici, Alka Malhotra, Matthew Dedek, Frank G. Espin, Daniel E. Roach, Guang dan Zhu, Joseph R. Voland, Tanya A. Moreno
Software Mentions: 5
Published: over 8 years ago

10.1155/2020/1980921

Identification of Differentially Expressed Genes and miRNAs Associated with Esophageal Squamous Cell Carcinoma by Integrated Analysis of Microarray Data
Cited by: 4
Author(s): Lemeng Zhang, Jianhua Chen, Tianli Cheng, Hua Yang, Changqie Pan, Haitao Li
Software Mentions: 5
Published: about 6 years ago

10.1186/s40793-021-00381-2

Soil, senescence and exudate utilisation: characterisation of the Paragon var. spring bread wheat root microbiome
Cited by: 17
Author(s): Samuel M. M. Prudence, Jake T. Newitt, Sarah F. Worsley, Michael C. Macey, J. Colin Murrell, Laura E. Lehtovirta-Morley, Matthew I. Hutchings
Software Mentions: 5
Published: about 5 years ago

10.3390/cells8040343

The Petunia CHANEL Gene is a ZEITLUPE Ortholog Coordinating Growth and Scent Profiles
Cited by: 18
Author(s): Marta I. Terry, Fernando Pérez-Sánz, María Victoria Díaz-Galián, Felipe Pérez de los Cobos, Pedro J. Navarro, Marcos Egea‐Cortines, Julia Weiß
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-020-59511-4

Does sediment composition sort kinorhynch communities? An ecomorphological approach through geometric morphometrics
Cited by: 3
Author(s): Diego Cepeda, Dolores Trigo, Fernando Pardos, Nuria Sánchez
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0136830

Methodological Aspects of the Potential Use of Dendrochronological Techniques When Analyzing the Long-Term Impact of Tourism on Protected Areas
Cited by: 4
Author(s): Szymon Ciapała, Paweł Adamski
Software Mentions: 5
Published: almost 11 years ago

10.1007/s10126-021-10033-8

Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
Cited by: 5
Author(s): Magnus Alm Rosenblad, Anna Abramova, Ulrika Lind, Pall I. Olason, Stefania Giacomello, Björn Nystedt, Anders Blomberg
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0165815

The Impact of Tree Diversity on Different Aspects of Insect Herbivory along a Global Temperature Gradient - A Meta-Analysis
Cited by: 40
Author(s): Stephan Kambach, Ingolf Kühn, Bastien Castagneyrol, Helge Bruelheide
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2020.00706

Mitochondrial Genome Polymorphisms in the Human Pathogenic Fungus Cryptococcus neoformans
Cited by: 21
Author(s): Yue Wang, Jianping Xu
Software Mentions: 5
Published: over 6 years ago

10.1007/s00122-020-03759-x

Multi-omics-based prediction of hybrid performance in canola
Cited by: 19
Author(s): Dominic Knoch, Christian R. Werner, Rhonda C. Meyer, David Riewe, Amine Abbadi, Sophie Lücke, Rod J. Snowdon, Thomas Altmann
Software Mentions: 5
Published: over 5 years ago

10.3390/plants9070833

Evaluation of Wild Potato Germplasm for Tuber Starch Content and Nitrogen Utilization Efficiency
Cited by: 6
Author(s): Silvia Bachmann-Pfabe, Klaus J. Dehmer
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0024351

Molecular Insights into Reprogramming-Initiation Events Mediated by the OSKM Gene Regulatory Network
Cited by: 63
Author(s): Nancy Mah, Ying Wang, Mei-Chih Liao, Alessandro Prigione, Justyna Józefczuk, Björn Lichtner, Katharina Wolfrum, Manuela Haltmeier, Max Flöttmann, Martin H. Schaefer, Alexander Hahn, Ralf Mrowka, Edda Klipp, Miguel A. Andrade‐Navarro, James Adjaye
Software Mentions: 5
Published: almost 15 years ago

10.1186/s13148-016-0234-1

Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus
Cited by: 8
Author(s): Masako Suzuki, Ryo Maekawa, Nicole E. Patterson, David M. Reynolds, Brent Calder, Sandra E. Reznik, Hye Heo, Francine Einstein, John M. Greally
Software Mentions: 5
Published: about 10 years ago

10.3389/fmicb.2019.00993

The Water Microbiome Through a Pilot Scale Advanced Treatment Facility for Direct Potable Reuse
Cited by: 33
Author(s): Rose Kantor, Scott Miller, Kara L. Nelson
Software Mentions: 5
Published: about 7 years ago

10.18632/aging.104001

Three-gene risk model in papillary renal cell carcinoma: a robust likelihood-based survival analysis
Cited by: 12
Author(s): Yutao Wang, Kexin Yan, Jiaxing Lin, Jianfeng Wang, Zhenhua Zheng, Xinxin Li, Zhixiong Hua, Yue-Peng Bu, Jianxiu Shi, Siqing Sun, Xuejie Li, Yang Liu, Jianbin Bi
Software Mentions: 5
Published: over 5 years ago

10.1038/s41396-020-0683-6

Drought and plant litter chemistry alter microbial gene expression and metabolite production
Cited by: 61
Author(s): Ashish Malik, Tami L. Swenson, Claudia Weihe, Eric W. Morrison, Jennifer B. H. Martiny, Eoin L. Brodie, Trent Northen, Steven D. Allison
Software Mentions: 5
Published: about 6 years ago

10.1016/j.cell.2019.05.047

Neutrophils Driving Unconventional T Cells Mediate Resistance against Murine Sarcomas and Selected Human Tumors
Cited by: 147
Author(s): Andrea Ponzetta, Roberta Carriero, Silvia Carnevale, Marialuisa Barbagallo, Martina Molgora, Chiara Perucchini, Elena Magrini, Francesca Gianni, Paolo Kunderfranco, Nadia Polentarutti, Fabio Pasqualini, Sabrina Di Marco, Domenico Supino, Clelia Peano, Ferdinando Carlo Maria Cananzi, Piergiuseppe Colombo, Silvana Pilotti, Suliman Yousef Alomar, Eduardo Bonavita, Maria Rosaria Galdiero, Cecília Garlanda, Alberto Mantovani, Sébastien Jaillon
Software Mentions: 5
Published: about 7 years ago

10.3389/fonc.2021.621430

Identification of Hub Genes Associated With Melanoma Development by Comprehensive Bioinformatics Analysis
Cited by: 8
Author(s): Jie Jiang, Chong Liu, Guoyong Xu, Tuo Liang, Chaojie Yu, Shijie Liao, Zide Zhang, Zhaojun Lu, Zequn Wang, Jiarui Chen, Tianyou Chen, Hao Li, Xinli Zhan
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01123-9

The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum
Cited by: 13
Author(s): Connor R. Tiffany, Jee Yon Lee, Alisdair Rogers, Erin E. Olsan, Pavel Morales, Franziska Faber, Andreas J. Bäumler
Software Mentions: 5
Published: almost 5 years ago

10.3389/fcell.2021.665161

An EMT-Related Gene Signature for Predicting Response to Adjuvant Chemotherapy in Pancreatic Ductal Adenocarcinoma
Cited by: 6
Author(s): Zengyu Feng, Kexian Li, Jianyao Lou, Yulian Wu, Chenghong Peng
Software Mentions: 5
Published: about 5 years ago

10.1038/srep29251

Overcoming the matched-sample bottleneck: an orthogonal approach to integrate omic data
Cited by: 21
Author(s): Tin Nguyen, Diana Diaz, Rebecca Tagett, Sorin Drăghici
Software Mentions: 5
Published: about 10 years ago

10.3390/s120608145

Accuracy and Precision of Equine Gait Event Detection during Walking with Limb and Trunk Mounted Inertial Sensors
Cited by: 49
Author(s): E. G. J. Olsen, Pia Haubro Andersen, Thilo Pfau
Software Mentions: 5
Published: about 14 years ago

10.7717/peerj.8172

Exploring profile and potential influencers of vaginal microbiome among asymptomatic pregnant Chinese women
Cited by: 10
Author(s): Yining He, Yun Huang, Zhengyin Zhang, Fei Yu, Yuejie Zheng
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pgen.1008261

Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes
Cited by: 26
Author(s): Eliška Táborská, Josef Pasulka, Radek Malı́k, Filip Horvat, Irena Jenickova, Zoe Jelić Matošević, Petr Svoboda
Software Mentions: 5
Published: over 6 years ago

10.1186/s12870-021-03042-1

Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
Cited by: 12
Author(s): Hongcheng Fang, Xia Liu, Yixin Dong, Shan Feng, Rui Zhou, Changxi Wang, Xinmei Ma, Jianning Liu, Ke Yang
Software Mentions: 5
Published: about 5 years ago

10.3389/fimmu.2021.670309

Comparative Immunogenomics of Canine Natural Killer Cells as Immunotherapy Target
Cited by: 7
Author(s): Alicia A. Gingrich, Taylor Reiter, Sean J Judge, Daniel York, Mio Yanagisawa, Aryana Razmara, Ian R. Sturgill, Ugur Nur Basmaci, Rachel Brady, Kevin Stoffel, William J. Murphy, Robert B. Rebhun, C. Titus Brown, Robert J. Canter
Software Mentions: 5
Published: almost 5 years ago

10.3390/jof6030180

Stem Endophytic Mycobiota in Wild and Domesticated Wheat: Structural Differences and Hidden Resources for Wheat Improvement
Cited by: 17
Author(s): Xiang Sun, Evsey Kosman, Amir Sharon
Software Mentions: 5
Published: almost 6 years ago

10.1186/1756-3305-7-249

Individual experience affects host choice in malaria vector mosquitoes
Cited by: 21
Author(s): Amélie Vantaux, Thierry Léfèvre, Roch K. Dabiré, Anna Cohuet
Software Mentions: 5
Published: over 12 years ago

10.1186/s40168-021-01037-6

When your host shuts down: larval diapause impacts host-microbiome interactions in Nasonia vitripennis
Cited by: 15
Author(s): Jessica Dittmer, Robert M. Brucker
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.569020

Distribution of Hydrogen-Producing Bacteria in Tibetan Hot Springs, China
Cited by: 3
Author(s): Li Ma, Geng Wu, Jian Yang, Liuqin Huang, Dorji Phurbu, Wenjun Li, Hongchen Jiang
Software Mentions: 5
Published: about 5 years ago

10.1155/2018/7351902

Elevated and Correlated Expressions of miR-24, miR-30d, miR-146a, and SFRP-4 in Human Abdominal Adipose Tissue Play a Role in Adiposity and Insulin Resistance
Cited by: 32
Author(s): Yury O. Nunez Lopez, Gabriella Garufi, Magdalena Pasarica, Attila A. Seyhan
Software Mentions: 5
Published: over 8 years ago

10.7554/eLife.61257

Evolutionary transcriptomics implicates HAND2 in the origins of implantation and regulation of gestation length
Cited by: 30
Author(s): Mirna Marinić, Katelyn Mika, Sravanthi Chigurupati, Vincent J. Lynch
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-60015-4

Respiratory mycobiome and suggestion of inter-kingdom network during acute pulmonary exacerbation in cystic fibrosis
Cited by: 62
Author(s): Perrine Soret, Louise-Eva Vandenborght, F Francis, Noémie Coron, Raphaël Enaud, Marta Avalos, Thierry Schaeverbeke, Patrick Berger, Michaël Fayon, Rodolphe Thiébaut, Laurence Delhaès, Magali Chabé, Christophe Audebert, Isabelle Durand-Joly, Amale Boldron, Isabelle Pin, Odile Cognet, H Pelloux, A. Prévotat, B. Wallaert, N. Wizla, C. Thumerelle, Dominique Turck
Software Mentions: 5
Published: over 6 years ago

10.1186/s12889-021-10989-1

Health indicators on adolescents reveal disparity and inequality on regional and national levels
Cited by: 3
Author(s): Mengqiao Wang
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-60065-8

Functional omics analyses reveal only minor effects of microRNAs on human somatic stem cell differentiation
Cited by: 7
Author(s): Jessica Schira‐Heinen, A. Czapla, Marion Hendricks, Andreas Kloetgen, Wasco Wruck, James Adjaye, Gesine Kögler, Hans Müller, Kai Stühler, Hans‐Ingo Trompeter
Software Mentions: 5
Published: over 6 years ago

10.1186/s12974-019-1500-x

Contribution of LTi and TH17 cells to B cell aggregate formation in the central nervous system in a mouse model of multiple sclerosis
Cited by: 18
Author(s): Verena Schropp, Jörn Rohde, Damiano M. Rovituso, Samir Jabari, Richa Bharti, Stefanie Küerten
Software Mentions: 5
Published: about 7 years ago

10.3390/diagnostics10090617

microRNA Expression Profile in Single Hormone Receptor-Positive Breast Cancers Is Mainly Dependent on HER2 Status—A Pilot Study
Cited by: 6
Author(s): Michał Kunc, Marta Popęda, Magdalena Niemira, Anna Szałkowska, Michał Bieńkowski, Rafał Pęksa, Aleksandra Łacko, Barbara Radecka, Marcin Braun, Joanna Pikiel, Maria Litwiniuk, Katarzyna Pogoda, Ewa Iżycka‐Świeszewska, Adam Krętowski, Anna Żaczek, Wojciech Biernat, Elżbieta Senkus
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-018-0555-8

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch
Cited by: 54
Author(s): Alice Michel, Lewis M. Ward, Shana K. Goffredi, Katherine S. Dawson, Daniel T. Baldassarre, Alec Brenner, Kiyoko M. Gotanda, John E. McCormack, Sean W. Mullin, Ariel O’Neill, Gabrielle S. Tender, J. Albert C. Uy, Kristie Yu, Victoria J. Orphan, Jaime A. Chaves
Software Mentions: 5
Published: almost 8 years ago

10.7554/eLife.27159

Development of Bag-1L as a therapeutic target in androgen receptor-dependent prostate cancer
Cited by: 29
Author(s): Laura Cato, Antje Neeb, Adam Sharp, Víctor Buzón, Scott B. Ficarro, Linxiao Yang, Claudia Muhle‐Goll, Nane C. Kuznik, Ruth Riisnaes, Daniel Nava Rodrigues, Olivier Armant, Victor Gourain, Guillaume Adelmant, Emmanuel Amankwah Ntim, Thomas Westerling, David Dolling, Pasquale Rescigno, Ines Figueiredo, Friedrich Fauser, Jiansheng Wu, Jaice T. Rottenberg, L. Shatkina, Claudia Ester, Burkhard Luy, Holger Puchta, Jakob Troppmair, Nicole Jung, Stefan Bräse, Uwe Strähle, Jarrod A. Marto, G. Ulrich Nienhaus, Bissan Al‐Lazikani, Xavier Salvatella, Johann S. de Bono, Andrew C. B. Cato, Myles Brown
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pntd.0007361

Host species and site of collection shape the microbiota of Rift Valley fever vectors in Kenya
Cited by: 3
Author(s): David P. Tchouassi, Ephantus J. Muturi, Samwel O. Arum, Chang‐Hyun Kim, Christopher J. Fields, Baldwyn Torto
Software Mentions: 5
Published: about 7 years ago

10.3390/cancers12082257

A Global Gene Body Methylation Measure Correlates Independently with Overall Survival in Solid Cancer Types
Cited by: 1
Author(s): Dietmar Pils, Elisabeth Steindl, Anna Bachmayr-Heyda, Sabine Dekan, Stefanie Aust
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41396-019-0543-4

Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
Cited by: 124
Author(s): Selma Vieira, Johannes Sikorski, Sophie Dietz, Katharina Herz, Marion Schrumpf, Helge Bruelheide, Dierk Scheel, Michael W. Friedrich, Jörg Overmann
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-78288-0

Common and personal target genes of the micronutrient vitamin D in primary immune cells from human peripheral blood
Cited by: 19
Author(s): Andrea Hanel, Antonio Neme, Marjo Malinen, Emmi Hämäläinen, Henna-Riikka Malmberg, Stéphane Etheve, Tomi‐Pekka Tuomainen, Jyrki K. Virtanen, Igor Bendik, Carsten Carlberg
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2020.00086

Parenchyma Abundance in Wood of Evergreen Trees Varies Independently of Nutrients
Cited by: 12
Author(s): Martyna M. Kotowska, Ian J. Wright, Mark Westoby
Software Mentions: 5
Published: over 6 years ago

10.1016/j.csbj.2020.06.010

Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics
Cited by: 33
Author(s): Lian Liu, Bowen Song, Jiani Ma, Yi Song, Song-Yao Zhang, Yujiao Tang, Xiangyu Wu, Zhen Wei, Kunqi Chen, Jionglong Su, Rong Rong, Zhi-Liang Lu, João Pedro de Magalhães, Daniel J. Rigden, Lin Zhang, Shaowu Zhang, Yufei Huang, Xiujuan Lei, Hui Liu, Jia Meng
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0184515

Unraveling the human salivary microbiome diversity in Indian populations
Cited by: 19
Author(s): Anujit Sarkar, Mark Stoneking, Madhusudan R. Nandineni
Software Mentions: 5
Published: almost 9 years ago

10.3389/fpls.2020.597589

Chloroplast Electron Chain, ROS Production, and Redox Homeostasis Are Modulated by COS-OGA Elicitation in Tomato (Solanum lycopersicum) Leaves
Cited by: 3
Author(s): Sophie Moreau, Géraldine van Aubel, Rekin’s Janky, Pierre Van Cutsem
Software Mentions: 5
Published: over 5 years ago

10.18632/aging.102983

Survival-associated alternative splicing signatures in non-small cell lung cancer
Cited by: 21
Author(s): Delong Zhao, Chuantao Zhang, Man Jiang, Yongjie Wang, Liang Yu, Li Wang, Kang Qin, Faisal Rehman
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.43627

Flura-seq identifies organ-specific metabolic adaptations during early metastatic colonization
Cited by: 42
Author(s): Harihar Basnet, Lin Tian, Karuna Ganesh, Yun-Han Huang, Danilo G. Macalinao, Edi Brogi, Lydia W.S. Finley, Joan Massagué
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-020-76769-w

GIANT: galaxy-based tool for interactive analysis of transcriptomic data
Cited by: 8
Author(s): Jimmy Vandel, Céline Gheeraert, Bart Staels, Jérôme Eeckhoute, Philippe Lefèbvre, Julie Dubois-Chevalier
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-62754-w

Associations of C-reactive Protein with 25-hydroxyvitamin D in 24 Specific Diseases: A Cross-sectional Study from NHANES
Cited by: 5
Author(s): Fang Yang, Mengzi Sun, Chong Sun, Jiagen Li, Xiuning Yang, Chunli Bi, Min Wang, Liyuan Pu, Jianmeng Wang, Chunxiao Wang, Meizhen Xie, Yan Yao, Lina Jin
Software Mentions: 5
Published: over 6 years ago

10.1186/s12906-018-2347-x

Investigate the mechanisms of Chinese medicine Fuzhengkangai towards EGFR mutation-positive lung adenocarcinomas by network pharmacology
Cited by: 34
Author(s): Zhitong Bing, Zhiyuan Cheng, Danfeng Shi, Xinkui Liu, Jianmin Tian, Xiaojun Yao, Jingyun Zhang, Yongfeng Wang, Kun Yang
Software Mentions: 5
Published: over 7 years ago

10.3389/fmolb.2021.716544

GeneTrail: A Framework for the Analysis of High-Throughput Profiles
Cited by: 1
Author(s): Nico Gerstner, Tim Kehl, Kerstin Lenhof, Lea Eckhart, Lara Schneider, Daniel Stöckel, Christina Backes, Eckart Meese, Andreas Keller, Hans‐Peter Lenhof
Software Mentions: 5
Published: almost 5 years ago

10.15252/emmm.202012105

Neuron type‐specific increase in lamin B1 contributes to nuclear dysfunction in Huntington’s disease
Cited by: 23
Author(s): Rafael Alcalá-Vida, Marta Garcia‐Forn, Carla Castany‐Pladevall, Jordi Creus-Muncunill, Yoko Itō, Enrique Blanco, Arantxa Golbano, Kilian Crespí-Vázquez, Aled Parry, Guy Slater, Shamith A. Samarajiwa, Sandra Peiró, Luciano Di Croce, Masashi Narita, Esther Pérez‐Navarro
Software Mentions: 5
Published: over 5 years ago