Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.55474

https://doi.org/10.7554/eLife.55474

An atlas of cell types in the mouse epididymis and vas deferens

Cited by: 45
Author(s): Vera D. Rinaldi, Elisa Donnard, Kyle Gellatly, Morten Rasmussen, Alper Küçükural, Onur Yukselen, Manuel Garber, Upasna Sharma, Oliver J. Rando
Published: over 4 years ago

Software Mentions 5

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: scran

Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113

cran: densityClust

Clustering by Fast Search and Find of Density Peaks
Papers that mentioned: 6

cran: SoupX

Single Cell mRNA Soup eXterminator
Papers that mentioned: 17

pypi: umitools

A toolset for handling sequencing data with unique molecular identifiers (UMIs)
Papers that mentioned: 3