10.1136/bmjopen-2019-031251

Residential area deprivation and risk of subsequent hospital admission in a British population: the EPIC-Norfolk cohort
Cited by: 7
Author(s): Robert Luben, Shabina Hayat, Anthony P. Khawaja, Nicholas J. Wareham, Paul Pharoah, Kay‐Tee Khaw
Software Mentions: 5
Published: over 6 years ago

10.1016/j.isci.2021.102847

High glucose macrophage exosomes enhance atherosclerosis by driving cellular proliferation & hematopoiesis
Cited by: 25
Author(s): Laura Bouchareychas, Phat Duong, Tuan Anh Phu, Eric Alsop, Bessie Meechoovet, Rebecca Reiman, M. Ng, Ryō Yamamoto, Hiromitsu Nakauchi, Warren J. Gasper, Kendall Van Keuren‐Jensen, Robert L. Raffaı̈
Software Mentions: 5
Published: almost 5 years ago

10.3390/cells10061371

Single-Cell Transcriptional Heterogeneity of Lymphatic Endothelial Cells in Normal and Inflamed Murine Lymph Nodes
Cited by: 18
Author(s): Eliane Sibler, Yuliang He, Luca Ducoli, Nadja Keller, Noriki Fujimoto, Lothar C. Dieterich, Michael Detmar
Software Mentions: 5
Published: about 5 years ago

10.1186/s13073-021-00952-5

Distinct transcriptional programs stratify ovarian cancer cell lines into the five major histological subtypes
Cited by: 39
Author(s): Bethany Barnes, Louisa Nelson, Anthony Tighe, George J. Burghel, I‐Hsuan Lin, Sudha Desai, Joanne C. McGrail, Robert D. Morgan, Stephen S. Taylor
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2018.00670

The Importance of Biologic Knowledge and Gene Expression Context for Genomic Data Interpretation
Cited by: 5
Author(s): Michael T. Zimmermann
Software Mentions: 5
Published: over 7 years ago

10.3389/fgene.2021.721873

Screening of DNA Damage Repair Genes Involved in the Prognosis of Triple-Negative Breast Cancer Patients Based on Bioinformatics
Cited by: 4
Author(s): Nan Wang, Yuanting Gu, Jiangrui Chi, Xinwei Li, Youyi Xiong, Chaochao Zhong, Fang Wang, Xinxing Wang, Lin Li
Software Mentions: 5
Published: almost 5 years ago

10.2196/23530

Cystic Fibrosis Point of Personalized Detection (CFPOPD): An Interactive Web Application
Cited by: 2
Author(s): Christopher Wolfe, Teresa Pestian, Emrah Gecili, Weiji Su, Ruth H. Keogh, John Pestian, Michael Seid, Peter J. Diggle, Assem G. Ziady, John Clancy, Daniel H. Grossoehme, Rhonda Szczesniak, Cole Brokamp
Software Mentions: 5
Published: over 5 years ago

10.1111/pbi.13085

Development of an integrated 200K <scp>SNP</scp> genotyping array and application for genetic mapping, genome assembly improvement and genome wide association studies in pear (<i>Pyrus</i>)
Cited by: 43
Author(s): Xiaolong Li, Jugpreet Singh, Mengfan Qin, Siwei Li, Xun Zhang, Mingyue Zhang, Awais Khan, Shaoling Zhang
Software Mentions: 5
Published: over 7 years ago

10.1111/jvim.15671

Effects of nebulized dexamethasone on the respiratory microbiota and mycobiota and relative equine herpesvirus‐1, 2, 4, 5 in an equine model of asthma
Cited by: 8
Author(s): Stephanie L. Bond, Matthew L. Workentine, Jana Hundt, James R. Gilkerson, Renaud Léguillette
Software Mentions: 5
Published: over 6 years ago

10.1186/s13071-016-1484-7

Pilot longitudinal mosquito surveillance study in the Danube Delta Biosphere Reserve and the first reports of Anopheles algeriensis Theobald, 1903 and Aedes hungaricus Mihályi, 1955 for Romania
Cited by: 17
Author(s): Edina Török, Alexandru Tomazatos, Dániel Cadar, Cintia Horváth, Lujza Keresztes, Stéphanie Jansen, Norbert Becker, Achim Kaiser, Octavian Popescu, Jonas Schmidt‐Chanasit, Hanna Jöst, Renke Lühken
Software Mentions: 5
Published: over 10 years ago

10.1186/s12859-019-3055-3

Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging
Cited by: 38
Author(s): Eric Czech, Bülent Arman Aksoy, Pınar Aksoy, Jeff Hammerbacher
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12967-020-02695-0

Transcriptome of nasopharyngeal samples from COVID-19 patients and a comparative analysis with other SARS-CoV-2 infection models reveal disparate host responses against SARS-CoV-2
Cited by: 39
Author(s): Abul B.M.M.K. Islam, A. A. Khan, Rasel Ahmed, Md. Sabbir Hossain, Shah Md. Tamim Kabir, Md Shahidul Islam, Amam Zonaed Siddiki
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms7120598

Environmental Filtering Drives the Assembly of Habitat Generalists and Specialists in the Coastal Sand Microbial Communities of Southern China
Cited by: 24
Author(s): Anyi Hu, Hongjie Wang, Meixian Cao, Abbas Rashid, Mingfeng Li, Chang‐Ping Yu
Software Mentions: 5
Published: over 6 years ago

10.1186/s40575-020-00094-8

The usage of Mate Select, a web-based selection tool for pedigree dogs for promoting sustainable breeding
Cited by: 0
Author(s): Mateja Janeš, Thomas W. Lewis, Joanna J. Ilska, John Woolliams
Software Mentions: 5
Published: almost 6 years ago

10.7554/eLife.54385

Polyploidy in the adult Drosophila brain
Cited by: 30
Author(s): Shyama Nandakumar, Olga Grushko, Laura Buttitta
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12967-019-1879-2

Clinico-pathological associations and concomitant mutations of the RAS/RAF pathway in metastatic colorectal cancer
Cited by: 11
Author(s): Edoardo Isnaldi, Anna Garuti, Gabriella Cirmena, Stefano Scabini, Edoardo Rimini, Lorenzo Ferrando, Michela Lia, Roberto Murialdo, Lucia Tixi, Enrico Carminati, Andrea Panaro, M. Gallo, Federica Grillo, Luca Mastracci, Lazzaro Repetto, Roberto Fiocca, Emanuele Romairone, Gabriele Zoppoli, Alberto Ballestrero
Software Mentions: 5
Published: about 7 years ago

10.1186/s12864-021-07849-y

Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat
Cited by: 7
Author(s): Guang Yang, Wenqiu Pan, Ruoyu Zhang, Yan Pan, Qifan Guo, Weining Song, Wenbin Zheng, Xiaojun Nie
Software Mentions: 5
Published: about 5 years ago

10.3390/jcm8010050

Efficacy of Integrating a Novel 16-Gene Biomarker Panel and Intelligence Classifiers for Differential Diagnosis of Rheumatoid Arthritis and Osteoarthritis
Cited by: 24
Author(s): Nguyen Phuoc Long, Seongoh Park, Nguyễn Hoàng Anh, Jung Eun Min, Sang Jun Yoon, Hyung Min Kim, Tran Diem Nghi, Dong Kyu Lim, Jeong Hill Park, Jong-Tae Lim, Sung Won Kwon
Software Mentions: 5
Published: over 7 years ago

10.3390/jcm8101666

The Extended Postoperative Care-Score (EXPO-Score)—An Objective Tool for Early Identification of Indication for Extended Postoperative Care
Cited by: 2
Author(s): Timo Iden, Amke Caliebe, Jochen Renner, Maj-Britt Hertz, Jan Höcker, Päivi Suvanto-Scholz, Markus Steinfath, Norbert Weiler, Matthias Gruenewald
Software Mentions: 5
Published: almost 7 years ago

10.1002/1878-0261.12957

Androgen receptor signalling confers clonogenic and migratory advantages in urothelial cell carcinoma of the bladder
Cited by: 5
Author(s): Maria V. Luna‐Velez, Jelmer Dijkstra, Marina Augusto Heuschkel, Frank Smit, Guillaume van de Zande, Dominique Smeets, J.P. Michiel Sedelaar, Michiel Vermeulen, Gerald W. Verhaegh, Jack A. Schalken
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2105-10-391

JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes
Cited by: 6
Author(s): Chunguang Liang, Alexander Schmid, María José López‐Sánchez, Andrés Moya, Roy Gross, Jörg Bernhardt, Thomas Dandekar
Software Mentions: 5
Published: over 16 years ago

10.7150/jca.50443

Six Novel Biomarkers for Diagnosis and Prognosis of Esophageal squamous cell carcinoma: validated by scRNA-seq and qPCR
Cited by: 24
Author(s): Liuhai Zheng, Linzhi Li, Jun Xie, Hai Jin, Nianyong Zhu
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1007082

DART-ID increases single-cell proteome coverage
Cited by: 49
Author(s): Albert T. Chen, Alexander Franks, Nikolai Slavov
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-48435-3

Reconstruction of the lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in Cerebral Infarction
Cited by: 22
Author(s): Junbo Zou, Herzl Chai, Xiaofei Zhang, Deliang Guo, Jia Tai, Yu Wang, Yulin Liang, Fang Wang, Jiangxue Cheng, Jing Wang, Yajun Shi
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-021-82951-5

Machine intelligence identifies soluble TNFa as a therapeutic target for spinal cord injury
Cited by: 10
Author(s): J. Russell Huie, Adam R. Ferguson, Nikos Kyritsis, Jonathan Z. Pan, Karen Irvine, Jessica L. Nielson, Patrick G. Schupp, Michael C. Oldham, John C. Gensel, Amity Lin, Mark R. Segal, Rajiv R. Ratan, Jacqueline C. Bresnahan, Michael S. Beattie
Software Mentions: 5
Published: over 5 years ago

10.18632/aging.102185

Prognostic value of long non-coding RNA signatures in bladder cancer
Cited by: 30
Author(s): Anbang He, Shiming He, Peng Ding, Yonghao Zhan, Yifan Li, Zhicong Chen, Yanqing Gong, Xuesong Li, Liqun Zhou
Software Mentions: 5
Published: almost 7 years ago

10.7554/eLife.58305

Damage-responsive, maturity-silenced enhancers regulate multiple genes that direct regeneration in Drosophila
Cited by: 38
Author(s): Robin E. Harris, Michael J. Stinchfield, Spencer L. Nystrom, Daniel J. McKay, Iswar K. Hariharan
Software Mentions: 5
Published: about 6 years ago

10.1038/srep27722

Genomic leftovers: identifying novel microsatellites, over-represented motifs and functional elements in the human genome
Cited by: 6
Author(s): Natalie C. Fonville, Karthik Raja Velmurugan, Hongseok Tae, Zalman Vaksman, Lauren J. McIver, Harold R. Garner
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0250568

NMR analysis of the correlation of metabolic changes in blood and cerebrospinal fluid in Alzheimer model male and female mice
Cited by: 2
Author(s): Filip Stojanovic, Mariam Taktek, Nam Huan Khieu, Junzhou Huang, Shuxian Jiang, Kerry Rennie, Balu Chakravarthy, Willard J. Costain, Miroslava Čuperlović-Culf
Software Mentions: 5
Published: about 5 years ago

10.18632/aging.102819

Expression and prognostic value of long non-coding RNA H19 in glioma via integrated bioinformatics analyses
Cited by: 33
Author(s): Yi Xiao, Zi-peng Zhu, LI Jian-xiong, Jie Yao, Haitao Jiang, Ran Ran, Xueyuan Li, Zhiqiang Li
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0069666

GobyWeb: Simplified Management and Analysis of Gene Expression and DNA Methylation Sequencing Data
Cited by: 21
Author(s): Kevin C. Dorff, Nyasha Chambwe, Zachary Zeno, Maria Simi, Rita Shaknovich, Fabien Campagne
Software Mentions: 5
Published: almost 13 years ago

10.7717/peerj.9644

Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters
Cited by: 26
Author(s): Giulia M. Marchioro, Bettina Glasl, Aschwin H. Engelen, Ester Á. Serrão, David G. Bourne, Nicole S. Webster, Pedro R. Frade
Software Mentions: 5
Published: almost 6 years ago

10.1093/jac/dkz526

Genomic dynamics of species and mobile genetic elements in a prolonged blaIMP-4-associated carbapenemase outbreak in an Australian hospital
Cited by: 28
Author(s): Assaf Gordon, Hang Phan, Samuel Lipworth, Elaine Cheong, Thomas Gottlieb, Sophie George, Tim Peto, Amy J Mathers, A Sarah Walker, Derrick W. Crook, Nicole Stoesser
Software Mentions: 5
Published: over 6 years ago

10.3390/jcm9010161

The Serum Cell-Free microRNA Expression Profile in MCTD, SLE, SSc, and RA Patients
Cited by: 16
Author(s): Barbara Stypińska, Anna Wajda, Ewa Walczuk, Marzena Olesińska, Aleksandra Lewandowska, Marcela Walczyk, Agnieszka Paradowska‐Gorycka
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-020-03902-x

recoup: flexible and versatile signal visualization from next generation sequencing
Cited by: 5
Author(s): Panagiotis Moulos
Software Mentions: 5
Published: over 5 years ago

10.3389/fvets.2020.580400

Spatial and Simultaneous Seroprevalence of Anti-Leptospira Antibodies in Owners and Their Domiciled Dogs in a Major City of Southern Brazil
Cited by: 9
Author(s): Aline do Nascimento Benitez, Thaís Cabral Monica, Ana Carolina Miura, Micheline Sahyun Romanelli, Lucienne Garcia Pretto‐Giordano, Roberta Lemos Freire, Regina Mitsuka‐Breganó, Camila Marinelli Martins, Alexander Welker Biondo, Isabela Machado Serrano, Thiago Henrique Carneiro Rios Lopes, Renato Barbosa Reis, Jancarlo Ferreira Gomes, Federico Costa, Elsio A. Wunder, Albert I. Ko, Italmar Teodorico Navarro
Software Mentions: 5
Published: over 5 years ago

10.1155/2020/3598417

Effect of BRCA1 on the Concurrent Chemoradiotherapy Resistance of Cervical Squamous Cell Carcinoma Based on Transcriptome Sequencing Analysis
Cited by: 13
Author(s): Xin Wen, Lingling Shui, Manhua Cui
Software Mentions: 5
Published: about 6 years ago

10.1186/s13148-020-00888-4

Alternative methylation of intron motifs is associated with cancer-related gene expression in both canine mammary tumor and human breast cancer
Cited by: 13
Author(s): A-Reum Nam, Kanghoon Lee, Hyeon-Ji Hwang, Johannes J. Schabort, Jaehoon An, Sungho Won, Je‐Yoel Cho
Software Mentions: 5
Published: about 6 years ago

10.1186/s13024-020-00415-2

Diabetic phenotype in mouse and humans reduces the number of microglia around β-amyloid plaques
Cited by: 16
Author(s): Teemu Natunen, Henna Martiskainen, Mikael Marttinen, Sami Gabbouj, Hennariikka Koivisto, Susanna Kemppainen, Satu Kaipainen, Mari Takalo, Hélèna Svobodova, Luukas Leppänen, Benjam Kemiläinen, Simo Ryhänen, Teemu Kuulasmaa, Eija Rahunen, Sisko Juutinen, Petra Mäkinen, Pasi Miettinen, Tuomas Rauramaa, Jussi Pihlajamäki, Annakaisa Haapasalo, Ville Leinonen, Heikki Tanila, Mikko Hiltunen
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1008790

Exclusive breastfeeding can attenuate body-mass-index increase among genetically susceptible children: A longitudinal study from the ALSPAC cohort
Cited by: 11
Author(s): Yan Yan Wu, Stephen J. Lye, Cindy‐Lee Dennis, Laurent Briollais
Software Mentions: 5
Published: about 6 years ago

10.1186/s12967-020-02503-9

Genomic landscape of the immune microenvironments of brain metastases in breast cancer
Cited by: 11
Author(s): Wei-Cheng Lu, Hui Xie, Ce Yuan, Jinjiang Li, Zhaoyang Li, Andrew Wu
Software Mentions: 5
Published: almost 6 years ago

10.3389/fncir.2019.00032

A Novel Type of Neuron Within the Dorsal Striatum
Cited by: 16
Author(s): Miaomiao Mao, Aditya Nair, George J Augustine
Software Mentions: 5
Published: about 7 years ago

10.1093/beheco/aru156

Biparental incubation-scheduling: no experimental evidence for major energetic constraints
Cited by: 31
Author(s): Martin Bulla, Will Cresswell, Anne L. Rutten, Mihai Vâlcu, Bart Kempenaers
Software Mentions: 5
Published: almost 12 years ago

10.3390/cancers13092115

Chromatin-Directed Proteomics Identifies ZNF84 as a p53-Independent Regulator of p21 in Genotoxic Stress Response
Cited by: 8
Author(s): Anna Strzeszewska-Potyrała, Karolina Staniak, Joanna Czarnecka‐Herok, Mahmoud-Reza Rafiee, Marcin Herok, Grażyna Mosieniak, Jeroen Krijgsveld, Ewa Sikora
Software Mentions: 5
Published: about 5 years ago

10.3389/fphys.2019.00278

Weighted Gene Co-expression Network Analysis for RNA-Sequencing Data of the Varicose Veins Transcriptome
Cited by: 14
Author(s): Jianbin Zhang, Qiangqiang Nie, Chaozeng Si, Wang Cheng, Yang Chen, Weiliang Sun, Pei Lin, Jing Guo, Jie Kong, Yiyao Cui, Feng Wang, Xueqiang Fan, Zhidong Ye, Jianyan Wen, Peng Liu
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2021.680622

Gut Microbiota Signature Among Asian Post-gestational Diabetes Women Linked to Macronutrient Intakes and Metabolic Phenotypes
Cited by: 12
Author(s): Zubaidah Hasain, Raja Affendi Raja Ali, Shairah Abdul Razak, Kamalrul Azlan Azizan, Emad El‐Omar, Nurul Huda Razalli, Norfilza Mohd Mokhtar
Software Mentions: 5
Published: about 5 years ago

10.1186/s12859-019-2869-3

fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies
Cited by: 1
Author(s): Jiaxing Lin, Alexander B. Sibley, Ivo Shterev, Andrew B. Nixon, Federico Innocenti, Cliburn Chan, Kouros Owzar
Software Mentions: 5
Published: about 7 years ago

10.3389/fcell.2021.664178

Differential Transcriptomes and Methylomes of Trophoblast Stem Cells From Naturally-Fertilized and Somatic Cell Nuclear-Transferred Embryos
Cited by: 0
Author(s): Jin Sun, Weisheng Zheng, Wenqiang Liu, Xiaochen Kou, Yanhong Zhao, Zehang Liang, Lu Wang, Zihao Zhang, Jing Xiao, Rui Gao, Shaorong Gao, Cizhong Jiang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-69317-z

Dynamics of uterine microbiota in postpartum dairy cows with clinical or subclinical endometritis
Cited by: 46
Author(s): Osvaldo Bogado Pascottini, Sabrina J. Van Schyndel, J. F. W. Sprícigo, Joyce D. Rousseau, J. Scott Weese, S.J. LeBlanc
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0186723

Association of birth weight with corneal power in early adolescence: Results from the National Health and Nutrition Examination Survey (NHANES) 1999–2008
Cited by: 20
Author(s): Achim Fieß, Alexander K. Schuster, Norbert Pfeiffer, Stefan Nickels
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0255304

Coral reefs in the Gilbert Islands of Kiribati: Resistance, resilience, and recovery after more than a decade of multiple stressors
Cited by: 22
Author(s): Sara E. Cannon, Erietera Aram, Toaea Beiateuea, A. Kiareti, Max Peter, Simon D. Donner
Software Mentions: 5
Published: almost 5 years ago

10.1093/bioinformatics/btx631

Towards unified quality verification of synthetic count data with <i>countsimQC</i>
Cited by: 39
Author(s): Charlotte Soneson, Mark D. Robinson
Software Mentions: 5
Published: almost 9 years ago

10.3390/brainsci11081085

Maternal Immune Activation Causes Social Behavior Deficits and Hypomyelination in Male Rat Offspring with an Autism-Like Microbiota Profile
Cited by: 29
Author(s): Gilbert Lee, Yen Kuang Lin, Jing Lai, Yu Chun Lo, Yu Yang, Syuan You Ye, Chia-Jung Lee, Ching Chiung Wang, Yung Hsiao Chiang, Sung Hui Tseng
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-015-2096-x

The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh
Cited by: 19
Author(s): James Boocock, David Chagné, Tony R. Merriman, Michael A. Black
Software Mentions: 5
Published: over 10 years ago

10.3389/fonc.2021.592107

Identification of Expression Patterns and Potential Prognostic Significance of m5C-Related Regulators in Head and Neck Squamous Cell Carcinoma
Cited by: 11
Author(s): Zhaolong Han, Biao Yang, Yu Wang, Xiuxia Zeng, Zhen Tian
Software Mentions: 5
Published: over 5 years ago

10.1186/s13059-020-02157-2

GraphAligner: rapid and versatile sequence-to-graph alignment
Cited by: 76
Author(s): Mikko Rautiainen, Tobias Marschall
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2021.707713

Identification of Candidate Blood mRNA Biomarkers in Intracerebral Hemorrhage Using Integrated Microarray and Weighted Gene Co-expression Network Analysis
Cited by: 3
Author(s): Feng Jin, Lei Li, Yuehan Hao, Ling Tang, Yuye Wang, Zhiyi He
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.7410

Global distribution and diversity of <i>Chaetoceros</i> (Bacillariophyta, Mediophyceae): integration of classical and novel strategies
Cited by: 29
Author(s): Danièle De Luca, Wiebe H. C. F. Kooistra, Diana Sarno, Chetan C. Gaonkar, Roberta Piredda
Software Mentions: 5
Published: almost 7 years ago

10.3389/fonc.2020.553045

m6A Reader HNRNPA2B1 Promotes Esophageal Cancer Progression via Up-Regulation of ACLY and ACC1
Cited by: 62
Author(s): Huimin Guo, Bei Wang, Kaiyue Xu, Ling Nie, Yao Fu, Zhangding Wang, Qiang Wang, Shouyu Wang, Xiaoping Zou
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12889-021-11761-1

Modeling the effect of age on quantiles of the incubation period distribution of COVID-19
Cited by: 0
Author(s): Xiaohui Liu, Lei Wang, Xiansi Ma, Jiewen Wang, Liwen Wu
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2105-12-306

Expression cartography of human tissues using self organizing maps
Cited by: 71
Author(s): Henry Wirth, Markus Löffler, Martin von Bergen, Hans Binder
Software Mentions: 5
Published: almost 15 years ago

10.1371/journal.pone.0160925

The 4p16.3 Parkinson Disease Risk Locus Is Associated with GAK Expression and Genes Involved with the Synaptic Vesicle Membrane
Cited by: 16
Author(s): Michael W. Nagle, Jeanne C. Latourelle, Adam Labadorf, Alexandra Dumitriu, Tiffany C. Hadzi, Thomas G. Beach, Richard H. Myers
Software Mentions: 5
Published: almost 10 years ago

10.1186/s12903-021-01439-w

Microbiological findings in early and late implant loss: an observational clinical case-controlled study
Cited by: 12
Author(s): Michael Korsch, Silke‐Mareike Marten, Dominic A. Stoll, Christopher Prechtl, Andreas Dötsch
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2017.02293

Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
Cited by: 35
Author(s): Melissa M. Arcand, David J. Levy‐Booth, Bobbi L. Helgason
Software Mentions: 5
Published: over 8 years ago

10.1007/s00424-021-02582-7

Abnormal neonatal sodium handling in skin precedes hypertension in the SAME rat
Cited by: 2
Author(s): L. J. Mullins, Jessica R. Ivy, Mairi Ward, Olav Tenstad, Helge Wiig, Kento Kitada, Jonathan Manning, Natalia Rakova, Dominik N. Müller, John J. Mullins
Software Mentions: 5
Published: about 5 years ago

10.1093/gbe/evz108

Divergent Allometric Trajectories in Gene Expression and Coexpression Produce Species Differences in Sympatrically Speciating Midas Cichlid Fish
Cited by: 8
Author(s): Carmelo Fruciano, Axel Meyer, Paolo Franchini
Software Mentions: 5
Published: about 7 years ago

10.3390/cancers13102460

Online, Group-Based Psychological Support for Adolescent and Young Adult Cancer Survivors: Results from the Recapture Life Randomized Trial
Cited by: 16
Author(s): Ursula M Sansom-Daly, Claire E. Wakefield, Sharon Ellis, Brittany C. McGill, Mark Donoghoe, Phyllis Butow, Richard A. Bryant, Susan Μ Sawyer, Pandora Patterson, Antoinette Anazodo, Megan Plaster, Kate Thompson, Lucy Holland, Michael Osborn, Fiona Maguire, Catherine O’Dwyer, Richard De Abreu Lourenço, Richard J. Cohn
Software Mentions: 5
Published: about 5 years ago

10.1186/s12966-018-0724-y

An open-source tool to identify active travel from hip-worn accelerometer, GPS and GIS data
Cited by: 16
Author(s): Duncan Procter, Angie S Page, Ashley R Cooper, Claire M Nightingale, Bina Ram, Alicja R. Rudnicka, Peter H. Whincup, Christelle Clary, Daniel Lewis, Steven Cummins, Anne Ellaway, Billie Giles-Corti, Derek G Cook, Christopher G. Owen
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12911-020-01271-2

Using machine learning methods to predict in-hospital mortality of sepsis patients in the ICU
Cited by: 64
Author(s): Guilan Kong, Ke Lin, Yonghua Hu
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2021.650416

Ferroptosis-Related Gene-Based Prognostic Model and Immune Infiltration in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Guojiang Zhao, Zonglong Wu, Liyuan Ge, Fusheng Yang, Kai Hong, Shudong Zhang, Lulin Ma
Software Mentions: 5
Published: about 5 years ago

10.1074/mcp.TIR119.001646

DEqMS: A Method for Accurate Variance Estimation in Differential Protein Expression Analysis
Cited by: 109
Author(s): Yong Zhu, Lukas M. Orre, Yan Zhou Tran, Georgios Mermelekas, Henrik J. Johansson, Alina Malyutina, Simon Anders, Janne Lehtiö
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-015-1945-y

Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens
Cited by: 34
Author(s): Guoqiang Yi, Manman Shen, Jiahui Yuan, Chang Sun, Zhongyi Duan, Liang Qu, Taocun Dou, Meng Ma, Jian Lü, Jun Guo, Sirui Chen, Lujiang Qu, Kehua Wang, Ning Yang
Software Mentions: 5
Published: almost 11 years ago

10.1186/s12911-017-0556-8

Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach
Cited by: 111
Author(s): Wei-Hung Weng, Kavishwar B. Wagholikar, Alexa T. McCray, Peter Szolovits, Henry C. Chueh
Software Mentions: 5
Published: over 8 years ago

10.7150/thno.51795

Genome-wide CRISPR/Cas9 knockout screening uncovers a novel inflammatory pathway critical for resistance to arginine-deprivation therapy
Cited by: 11
Author(s): Cheng‐Ying Chu, Yi‐Ching Lee, Cheng-Han Hsieh, Chi‐Tai Yeh, Tsu‐Yi Chao, Po-Hung Chen, I-Hsuan Lin, Tsung‐Han Hsieh, Jing Wen Shih, Chia‐Hsiung Cheng, Che-Chang Chang, Po-Chuan Lin, Yuan‐Li Huang, Tsung-Ming Chen, Yun Yen, David K. Ann, Hsing-Jien Kung
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2288-14-99

Detection of independent associations in a large epidemiologic dataset: a comparison of random forests, boosted regression trees, conventional and penalized logistic regression for identifying independent factors associated with H1N1pdm influenza infections
Cited by: 33
Author(s): Yohann Mansiaux, Fabrice Carrat
Software Mentions: 5
Published: almost 12 years ago

10.1186/s12887-020-02411-3

Utility of medical record diagnostic codes to ascertain attention-deficit/hyperactivity disorder and learning disabilities in populations of children
Cited by: 6
Author(s): Yu Shi, Phillip J. Schulte, Andrew C. Hanson, Michael J. Zaccariello, Dayu Hu, Sheri Crow, Randall P. Flick, David O. Warner
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-017-0392-1

Metabolic capability and in situ activity of microorganisms in an oil reservoir
Cited by: 61
Author(s): Yi Fan Liu, Daniela Domingos Galzerani, Serge Maurice Mbadinga, Livia S. Zaramela, Ji Dong Gu, Bo Zhong Mu, Karsten Zengler
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2021.683685

Characterization of Supragingival Plaque and Oral Swab Microbiomes in Children With Severe Early Childhood Caries
Cited by: 13
Author(s): Vivianne Cruz de Jesus, Mohd Wasif Khan, Betty-Anne Mittermuller, Kangmin Duan, Pingzhao Hu, Robert J Schroth, Prashen Chelikani
Software Mentions: 5
Published: about 5 years ago

10.18632/oncotarget.13062

Genomic profiling is predictive of response to cisplatin treatment but not to PI3K inhibition in bladder cancer patient-derived xenografts
Cited by: 29
Author(s): Lei Wei, Sreenivasulu Chintala, Eric Ciamporcero, Swathi Ramakrishnan, May Elbanna, Jianmin Wang, Qiang Hu, Sean T. Glenn, Mitsuko Murakami, Lu Liu, Eduardo Cortes Gomez, Yuchen Sun, Jacob Conroy, Kiersten Marie Miles, Malathi Kullappan, Sudha Ramaiah, Anand Anbarasu, Anna Woloszynska‐Read, Candace S. Johnson, Jeffrey M. Conroy, Song Liu, Carl Morrison, Роберто Пили
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2019.01961

Sponges and Their Microbiomes Show Similar Community Metrics Across Impacted and Well-Preserved Reefs
Cited by: 19
Author(s): Marta Turon, Joan Cáliz, Xavier Triadó–Margarit, Emilio O. Casamayor, María Jesús Uriz
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2018.00031

Prebiotic Wheat Bran Fractions Induce Specific Microbiota Changes
Cited by: 37
Author(s): Kevin D’hoe, Lorenza Conterno, Francesca Fava, Gwen Falony, Sara Vieira-Silva, Joan Vermeiren, Kieran Tuohy, Jeroen Raes
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pbio.2003962

Design of synthetic bacterial communities for predictable plant phenotypes
Cited by: 157
Author(s): Sur Herrera Paredes, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana S. Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, Meghan E. Feltcher, Matthew J. Powers, Elizabeth A. Shank, Corbin D. Jones, Vladimir Jojic, Jeffery L. Dangl, Gabriel Castrillo
Software Mentions: 5
Published: over 8 years ago

10.1016/j.cell.2021.03.062

Splice site m6A methylation prevents binding of U2AF35 to inhibit RNA splicing
Cited by: 88
Author(s): Mateusz Mendel, Kamila Delaney, Radha Raman Pandey, Kuan-Ming Chen, Joanna M. Wenda, Cathrine Broberg Vågbø, Florian Steiner, David Homolka, Ramesh S. Pillai
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.4694

Viromes of one year old infants reveal the impact of birth mode on microbiome diversity
Cited by: 89
Author(s): A. McCann, Feargal J. Ryan, Stephen R. Stockdale, Marion Dalmasso, Tony Blake, C. Anthony Ryan, Catherine Stanton, Susan Mills, R. Paul Ross, Colin Hill
Software Mentions: 5
Published: about 8 years ago

10.1002/bimj.201100251

Regression trees for predicting mortality in patients with cardiovascular disease: What improvement is achieved by using ensemble‐based methods?
Cited by: 58
Author(s): Peter C. Austin, Douglas S. Lee, Ewout W. Steyerberg, Jack V. Tu
Software Mentions: 5
Published: about 14 years ago

10.7717/peerj.6448

The draft genome of strain <i>c</i>Cpun from biting midges confirms insect <i>Cardinium</i> are not a monophyletic group and reveals a novel gene family expansion in a symbiont
Cited by: 10
Author(s): Stefanos Siozios, Jack Pilgrim, Alistair C. Darby, Matthew Baylis, Gregory D. D. Hurst
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.7734

High foliar K and P resorption efficiencies in old‐growth tropical forests growing on nutrient‐poor soils
Cited by: 17
Author(s): Ifigenia Urbina, Oriol Grau, Jordi Sardans, Olga Margalef, Guille Peguero, Dolores Asensio, Joan Llusià, Romà Ogaya, Albert Gargallo‐Garriga, Leandro Van Langenhove, Lore T. Verryckt, Elodie A. Courtois, Clément Stahl, Jennifer L. Soong, Jérôme Chave, Bruno Hérault, Ivan A. Janssens, Emma J. Sayer, Josep Peñuelas
Software Mentions: 5
Published: about 5 years ago

10.1186/s13072-015-0046-0

Functionally distinct patterns of nucleosome remodeling at enhancers in glucocorticoid-treated acute lymphoblastic leukemia
Cited by: 16
Author(s): Jiansheng Wu, Luca Pinello, Elinor Yissachar, Jonathan W. Wischhusen, Guo‐Cheng Yuan, Charles W.M. Roberts
Software Mentions: 5
Published: over 10 years ago

10.1038/s41598-018-29267-z

Intrinsic Rhythmicity Predicts Synchronization-Continuation Entrainment Performance
Cited by: 26
Author(s): Trevor McPherson, Dorita S. Berger, Sankaraleengam Alagapan, Flavio Fröhlich
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-021-98343-8

Low serum vitamin D concentrations in Spring-born dairy calves are associated with elevated peripheral leukocytes
Cited by: 7
Author(s): Susana Flores‐Villalva, Megan B. O’Brien, Cian Reid, Seán Lacey, Stephen V. Gordon, Corwin D. Nelson, Kieran G. Meade
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.cell.2018.09.043

Identification, Characterization, and Heritability of Murine Metastable Epialleles: Implications for Non-genetic Inheritance
Cited by: 111
Author(s): Anastasiya Kazachenka, Tessa M. Bertozzi, Marcela K. Sjoberg-Herrera, N Walker, Joseph Gardner, Richard Gunning, Eleni Pahita, Sarah Adams, David J. Adams, Anne C. Ferguson-Smith
Software Mentions: 5
Published: over 7 years ago

10.1186/s12864-017-4364-4

Pronounced strain-specific chemosensory receptor gene expression in the mouse vomeronasal organ
Cited by: 16
Author(s): Kyle Duyck, Vasha DuTell, Limei Ma, Ariel Paulson, Chong Yu
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pcbi.1009138

Behavioral correlates of cortical semantic representations modeled by word vectors
Cited by: 6
Author(s): Shogo Nishida, Antione Blanc, Naoya Maeda, Masataka Kado, Shinji Nishimoto
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.6273

Cones structure and seed traits of four species of large‐seeded pines: Adaptation to animal‐mediated dispersal
Cited by: 1
Author(s): Manyu Zhang, Chang-Xiang Su, Changhu Lu
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0120605

The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth
Cited by: 57
Author(s): Stephen M. Techtmann, Julian L. Fortney, Kati Ayers, Dominique C. Joyner, Thomas D. Linley, Susan M. Pfiffner, Terry C. Hazen
Software Mentions: 5
Published: over 11 years ago

10.1098/rsos.191883

No evidence for neonicotinoid preferences in the bumblebee <i>Bombus impatiens</i>
Cited by: 17
Author(s): Felicity Muth, Rebekah L. Gaxiola, Anne S. Leonard
Software Mentions: 5
Published: about 6 years ago

10.3389/fnins.2020.607215

Unraveling Targetable Systemic and Cell-Type-Specific Molecular Phenotypes of Alzheimer’s and Parkinson’s Brains With Digital Cytometry
Cited by: 5
Author(s): Marie Catherine Bordone, Nuno L. Barbosa‐Morais
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0234908

Machine learning and natural language processing methods to identify ischemic stroke, acuity and location from radiology reports
Cited by: 59
Author(s): Charlene Ong, Agni Orfanoudaki, Rebecca Zhang, Francois Pierre M. Caprasse, Meghan R. Hutch, Liang Ma, Darian Fard, Oluwafemi Balogun, Matthew Miller, Margaret A. Minnig, Hanife Saglam, Brenton Prescott, David M. Greer, Stelios M. Smirnakis, Dimitris Bertsimas
Software Mentions: 5
Published: about 6 years ago

10.1186/s13058-015-0613-0

Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles
Cited by: 62
Author(s): Krista Vincent, Scott D. Findlay, Lynne-Marie Postovit
Software Mentions: 5
Published: almost 11 years ago

10.3389/fmicb.2021.665858

Multi-Omics Approach Reveals the Potential Core Vaccine Targets for the Emerging Foodborne Pathogen Campylobacter jejuni
Cited by: 6
Author(s): Hai‐Yan Cao, Hanxiao Xu, Ning Cai, Xiang Li, Ren Qiu-fang, Tiantian Zhang, Yusen Zhang, Rui Gao
Software Mentions: 5
Published: about 5 years ago