10.1136/bmj.l440

Duration of antibiotic treatment for common infections in English primary care: cross sectional analysis and comparison with guidelines
Cited by: 73
Author(s): Koen B Pouwels, Susan Hopkins, Martin J. Llewelyn, A Sarah Walker, Cliodna McNulty, Julie V. Robotham
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.9644

Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters
Cited by: 26
Author(s): Giulia M. Marchioro, Bettina Glasl, Aschwin H. Engelen, Ester Á. Serrão, David G. Bourne, Nicole S. Webster, Pedro R. Frade
Software Mentions: 5
Published: almost 6 years ago

10.3389/fphys.2019.00278

Weighted Gene Co-expression Network Analysis for RNA-Sequencing Data of the Varicose Veins Transcriptome
Cited by: 14
Author(s): Jianbin Zhang, Qiangqiang Nie, Chaozeng Si, Wang Cheng, Yang Chen, Weiliang Sun, Pei Lin, Jing Guo, Jie Kong, Yiyao Cui, Feng Wang, Xueqiang Fan, Zhidong Ye, Jianyan Wen, Peng Liu
Software Mentions: 5
Published: over 7 years ago

10.1155/2020/3598417

Effect of BRCA1 on the Concurrent Chemoradiotherapy Resistance of Cervical Squamous Cell Carcinoma Based on Transcriptome Sequencing Analysis
Cited by: 13
Author(s): Xin Wen, Lingling Shui, Manhua Cui
Software Mentions: 5
Published: about 6 years ago

10.1155/2020/3451610

A Pipeline to Call Multilevel Expression Changes between Cancer and Normal Tissues and Its Applications in Repurposing Drugs Effective for Gastric Cancer
Cited by: 3
Author(s): Wei Gao, Jun Yang, Changhua Zhuo, Sha Huang, Lin Jia, Guangfeng Wu, Min Zhou
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2020.575861

Effect of Inorganic N Top Dressing and Trichoderma harzianum Seed-Inoculation on Crop Yield and the Shaping of Root Microbial Communities of Wheat Plants Cultivated Under High Basal N Fertilization
Cited by: 29
Author(s): María Illescas, M. Belén Rubio, Víctor Hernández-Ruiz, María E. Morán-Diez, Ángel Emilio Martínez de Alba, Carlos Nicolás, Enrique Monte, Rosa Hermosa
Software Mentions: 5
Published: over 5 years ago

10.3389/fcell.2014.00040

Quantifying periodicity in omics data
Cited by: 7
Author(s): Cornelia Amariei, Masaru Tomita, Douglas B. Murray
Software Mentions: 5
Published: almost 12 years ago

10.7554/eLife.04530

The long non-coding RNA Dali is an epigenetic regulator of neural differentiation
Cited by: 142
Author(s): Vladislava Chalei, Stephen N. Sansom, Lesheng Kong, Sheena Lee, Juan Montiel, Keith W. Vance, Chris P. Ponting
Software Mentions: 5
Published: over 11 years ago

10.3390/v13061129

Evidence of Transcriptional Shutoff by Pathogenic Viral Haemorrhagic Septicaemia Virus in Rainbow Trout
Cited by: 4
Author(s): Irene Cano, Eduarda M. Santos, Karen Moore, Audrey Farbos, Ronny van Aerle
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2021.648898

A Novel Method to Identify the Differences Between Two Single Cell Groups at Single Gene, Gene Pair, and Gene Module Levels
Cited by: 1
Author(s): Lingyu Cui, Bo Wang, Caixia Ren, Ailan Wang, Hong An, Wei Liang
Software Mentions: 5
Published: over 5 years ago

10.1186/s13104-016-2340-8

treeman: an R package for efficient and intuitive manipulation of phylogenetic trees
Cited by: 16
Author(s): Dominic J. Bennett, Mark D. Sutton, Samuel T. Turvey
Software Mentions: 5
Published: over 9 years ago

10.3390/nu12092570

Diet, Perceived Intestinal Well-Being and Compositions of Fecal Microbiota and Short Chain Fatty Acids in Oat-Using Subjects with Celiac Disease or Gluten Sensitivity
Cited by: 8
Author(s): Lotta Nylund, Salla Hakkola, Leo Lahti, Seppo Salminen, Marko Kalliomäki, Baoru Yang, Kaisa M. Linderborg
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13059-020-02054-8

CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data
Cited by: 14
Author(s): Zijian Ni, Shuyang Chen, Jared Brown, Christina Kendziorski
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.8141

Experimental evaluation of genomic DNA degradation rates for the pathogen <i>Pseudogymnoascus destructans</i> (Pd) in bat guano
Cited by: 5
Author(s): Jenny Urbina, Tara Chestnut, Donelle Schwalm, Jenn Allen, Taal Levi
Software Mentions: 5
Published: over 6 years ago

10.1002/advs.201902880

ImmuCellAI: A Unique Method for Comprehensive T‐Cell Subsets Abundance Prediction and its Application in Cancer Immunotherapy
Cited by: 479
Author(s): Ya-Ru Miao, Qiong Zhang, Qian Lei, Mei Luo, Gui-Yan Xie, Hongxiang Wang, An‐Yuan Guo
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-015-0597-x

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles
Cited by: 30
Author(s): Catalina Anghel, Gerald Quon, Syed Haider, Francis Nguyen, Amit G. Deshwar, Quaid Morris, Paul C. Boutros
Software Mentions: 5
Published: about 11 years ago

10.1186/s12864-015-1787-7

Identification and functional analysis of early gene expression induced by circadian light-resetting in Drosophila
Cited by: 20
Author(s): Adeolu B. Adewoye, Charalambos P. Kyriacou, Eran Tauber
Software Mentions: 5
Published: almost 11 years ago

10.3390/brainsci10120938

A Review and a Framework of Variables for Defining and Characterizing Tinnitus Subphenotypes
Cited by: 15
Author(s): Eleni Genitsaridi, Derek J. Hoare, Theodore Kypraios, Deborah A. Hall
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.01961

Sponges and Their Microbiomes Show Similar Community Metrics Across Impacted and Well-Preserved Reefs
Cited by: 19
Author(s): Marta Turon, Joan Cáliz, Xavier Triadó–Margarit, Emilio O. Casamayor, María Jesús Uriz
Software Mentions: 5
Published: almost 7 years ago

10.1186/s42523-021-00074-8

Host reproductive cycle influences the pouch microbiota of wild southern hairy-nosed wombats (Lasiorhinus latifrons)
Cited by: 10
Author(s): Sesilje Weiss, David A. Taggart, Ian Smith, Kristofer M. Helgen, Raphael Eisenhofer
Software Mentions: 5
Published: over 5 years ago

10.1186/s12866-020-01795-7

Optimizing 16S rRNA gene profile analysis from low biomass nasopharyngeal and induced sputum specimens
Cited by: 15
Author(s): Shantelle Claassen-Weitz, Sugnet Gardner-Lubbe, Kilaza Samson Mwaikono, Elloise du Toit, Heather J. Zar, Mark P. Nicol
Software Mentions: 5
Published: about 6 years ago

10.1128/mSystems.00094-18

Butyrate Producers as Potential Next-Generation Probiotics: Safety Assessment of the Administration of <i>Butyricicoccus pullicaecorum</i> to Healthy Volunteers
Cited by: 77
Author(s): Leen Boesmans, Mireia Vallès-Colomer, Jun Wang, Venessa Eeckhaut, Gwen Falony, Richard Ducatelle, Filip Van Immerseel, Jeroen Raes, Kristin Verbeke
Software Mentions: 5
Published: over 7 years ago

10.3390/microorganisms9051054

Microbial Sharing between Pediatric Patients and Therapy Dogs during Hospital Animal-Assisted Intervention Programs
Cited by: 7
Author(s): Kathryn R. Dalton, Kathy Ruble, Laurel E. Redding, Daniel O. Morris, Noel T. Mueller, Roland J. Thorpe, Jacqueline Agnew, Karen C. Carroll, Paul J. Planet, Ronald C. Rubenstein, Allen Chen, Elizabeth A. Grice, Meghan F. Davis
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2105-9-303

A unified approach to false discovery rate estimation
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Author(s): Korbinian Strimmer
Software Mentions: 5
Published: about 18 years ago

10.3389/fped.2020.00052

A Multidisciplinary Intervention in Childhood Obesity Acutely Improves Insulin Resistance and Inflammatory Markers Independent From Body Composition
Cited by: 7
Author(s): Ernst Mayerhofer, Franz Ratzinger, Nina Elvira Kienreich, Annika Stiel, Nadine Witzeneder, Eva Schrefl, Georg Greiner, Christoph Wegscheider, Irene Graf, Klaus G. Schmetterer, Rodrig Marculescu, Thomas Szekeres, Thomas Perkmann, Martina Fondi, Oswald Wagner, Harald Esterbauer, Matthias Mayerhofer, Stefana Holocher-Ertl, Claudia Wojnarowski, Gregor Hoermann
Software Mentions: 5
Published: over 6 years ago

10.1093/hmg/ddab031

Sexual dimorphism in cancer: insights from transcriptional signatures in kidney tissue and renal cell carcinoma
Cited by: 10
Author(s): Ruhina Shirin Laskar, Peng Li, Szilvia Ecsedi, Behnoush Abedi‐Ardekani, G. Durand, Nivonirina Robinot, Jean-Noël Hubert, Vladimí­r Janout, Давид Заридзе, Anush Mukeria, Dana Mateș, Ivana Holcátová, Lenka Foretová, Beata Świątkowska, Zoran Džamić, Saša Milosavljević, Robert Olaso, Anne Boland, Jean‐François Deleuze, David C. Muller, James McKay, Paul Brennan, Florence Le Calvez-Kelm, Ghislaine Scélo, Estelle Chanudet
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.12278

Patterns of differential gene expression in adult rotation‐resistant and wild‐type western corn rootworm digestive tracts
Cited by: 10
Author(s): Chia‐Ching Chu, Jorge A. Zavala, Joseph L. Spencer, M. Curzi, Christopher J. Fields, Jenny Drnevich, Blair D. Siegfried, Manfredo J. Seufferheld
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-017-01948-1

Formants provide honest acoustic cues to body size in American alligators
Cited by: 24
Author(s): Stephan A. Reber, Judith Janisch, Kevin Torregrosa, Jim Darlington, Kent A. Vliet, W. Tecumseh Fitch
Software Mentions: 5
Published: about 9 years ago

10.1186/s12864-019-6019-0

Identification of methylation states of DNA regions for Illumina methylation BeadChip
Cited by: 12
Author(s): Ximei Luo, Fang Wang, Guohua Wang, Yuming Zhao
Software Mentions: 5
Published: over 6 years ago

10.1016/j.agee.2018.10.008

Moth responses to sympathetic hedgerow management in temperate farmland
Cited by: 16
Author(s): Jérémy S.P. Froidevaux, Moth Broyles, Gareth Jones
Software Mentions: 5
Published: over 7 years ago

10.1038/sdata.2015.51

De novo transcriptome profiling of highly purified human lymphocytes primary cells
Cited by: 34
Author(s): Raoul Jean Pierre Bonnal, Valeria Ranzani, Alberto Arrigoni, Serena Maria Curti, Ilaria Panzeri, Paola Gruarin, Sergio Abrignani, Grazisa Rossetti, Massimiliano Pagani
Software Mentions: 5
Published: almost 11 years ago

10.1186/s13059-019-1831-z

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
Cited by: 83
Author(s): Robert C. Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Álvarez, Martha L. Daviglus, Neil Schneiderman, Gregory A. Talavera, Marc D. Gellman, Bharat Thyagarajan, Jee Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica Williams-Nguyen, Michael C. Wu, Kari E. North, Justin P. Shaffer, Christopher C. Sollecito, Qibin Qi, Carmen R. Isasi, Tao Wang, Rob Knight, Robert D. Burk
Software Mentions: 5
Published: over 6 years ago

10.1534/g3.117.300125

Interchromosomal Transfer of Immune Regulation During Infection of Barley with the Powdery Mildew Pathogen
Cited by: 4
Author(s): Priyanka Surana, Ruo Xu, Greg Fuerst, Antony V. E. Chapman, Dan Nettleton, Roger P. Wise
Software Mentions: 5
Published: almost 9 years ago

10.3390/genes10030212

RNA Sequencing Reveals Specific Transcriptomic Signatures Distinguishing Effects of the [SWI+] Prion and SWI1 Deletion in Yeast Saccharomyces cerevisiae
Cited by: 11
Author(s): Yury V. Malovichko, Kirill S. Antonets, Anna R. Maslova, Е. А. Андреева, Sergey G. Inge-Vechtomov, Anton A. Nizhnikov
Software Mentions: 5
Published: over 7 years ago

10.3389/fimmu.2021.640837

Transcriptomic Analysis of Inflammatory Cardiomyopathy Identifies Molecular Signatures of Disease and Informs in silico Prediction of a Network-Based Rationale for Therapy
Cited by: 1
Author(s): Khushboo Singh, Hai Fang, Graham Davies, Benjamin Wright, Helen Lockstone, Richard O. Williams, Daniela Čiháková, Julian C. Knight, Shoumo Bhattacharya
Software Mentions: 5
Published: over 5 years ago

10.3390/pathogens10091196

Nanopore Assay Reveals Cell-Type-Dependent Gene Expression of Vesicular Stomatitis Indiana Virus and Differential Host Cell Response
Cited by: 2
Author(s): Balázs Kakuk, A. Kiss, Gábor Torma, Zsolt Csabai, István Prazsák, Máté Mizik, Klára Megyeri, Dóra Tombácz, Zsolt Boldogkői
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13071-021-04967-0

Effects of insemination and blood-feeding on locomotor activity of wild-derived females of the malaria mosquito Anopheles coluzzii
Cited by: 4
Author(s): Amadou S Traoré, Angélique Porciani, Nicolas Moiroux, Roch K. Dabiré, Frédéric Simard, Carlo Costantini, Karine Mouline
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.11531

The impact of PIT tags on the growth and survival of pythons is insignificant in randomised controlled trial
Cited by: 2
Author(s): Patrick L. Taggart, Stephen Morris, Charles Caraguel
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2014.00251

Hidden Treasures in “Ancient” Microarrays: Gene-Expression Portrays Biology and Potential Resistance Pathways of Major Lung Cancer Subtypes and Normal Tissue
Cited by: 14
Author(s): Konstantinos Kerkentzes, Vincenzo Lagani, Ioannis Tsamardinos, Mogens Vyberg, Oluf Dimitri Røe
Software Mentions: 5
Published: almost 12 years ago

10.1371/journal.pone.0218264

Predicting biomedical relationships using the knowledge and graph embedding cascade model
Cited by: 18
Author(s): Xiaomin Liang, Daifeng Li, Min Song, Andrew D. Madden, Ying Ding, Yi Bu
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0080156

PD5: A General Purpose Library for Primer Design Software
Cited by: 6
Author(s): Michael C. Riley, Wayne Aubrey, Michael Young, Amanda Clare
Software Mentions: 5
Published: over 12 years ago

10.3390/genes11080868

Identification of circRNA-lncRNA-miRNA-mRNA Competitive Endogenous RNA Network as Novel Prognostic Markers for Acute Myeloid Leukemia
Cited by: 52
Author(s): Yuanrong Cheng, Yangfeng Su, Shoubi Wang, Yurun Liu, Lin Jin, Qi Wan, Ying Liu, Chaoyang Li, Xuan Sang, Yang Liu, Chang Liu, Zhichong Wang
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.conctc.2021.100815

Evidence of the medical and economic benefits of implementing hygiene measures by a prevention link physician in trauma surgery: Study protocol for a biphasic multicenter prospective interventional pre-post cohort study using a structured intervention bundle development and tools of behavior change management
Cited by: 1
Author(s): Meike Maria Neuwirth, Benedikt Marche, Christiane Kugler, Dominik Bures, Dirk Sauerland, Swetlana Herbrandt, Uwe Ligges, Frauke Mattner, Robin Otchwemah
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2021.705939

Identification of the Effects of Chondroitin Sulfate on Inhibiting CDKs in Colorectal Cancer Based on Bioinformatic Analysis and Experimental Validation
Cited by: 1
Author(s): Yingyu Zhou, Xuyang Li, Yuki Morita, Satoshi Hachimura, Takuya Miyakawa, Sachiko Takahashi, Masaru Tanokura
Software Mentions: 5
Published: almost 5 years ago

10.3390/microorganisms9091897

High Diversity of Leptospira Species Infecting Bats Captured in the Urabá Region (Antioquia-Colombia)
Cited by: 7
Author(s): Fernando P. Monroy, Sergio Solari, Juan A. López, Piedad Agudelo‐Flórez, Ronald Guillermo Peláez Sánchez
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0053514

Testing the Stress-Gradient Hypothesis at the Roof of the World: Effects of the Cushion Plant Thylacospermum caespitosum on Species Assemblages
Cited by: 58
Author(s): Miroslav Dvorský, Jiří Doležal, Martin Kopecký, Zuzana Chlumská, Kateřina Janatková, Jan Altman, Francesco de Bello, Klára Řeháková
Software Mentions: 5
Published: over 13 years ago

10.18632/aging.202582

Pan-cancer investigation reveals mechanistic insights of planar cell polarity gene Fuz in carcinogenesis
Cited by: 5
Author(s): Zhefan Stephen Chen, Xiao Lin, Ting-Fung Chan, Ho Yin Chan
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0222995

Single session high definition transcranial direct current stimulation to the cerebellum does not impact higher cognitive function
Cited by: 7
Author(s): Ted Maldonado, James R. M. Goen, Michael J. Imburgio, Sydney M. Eakin, Bernard Ja
Software Mentions: 5
Published: almost 7 years ago

10.3389/fimmu.2019.01716

Enhanced Immunomodulation in Inflammatory Environments Favors Human Cardiac Mesenchymal Stromal-Like Cells for Allogeneic Cell Therapies
Cited by: 3
Author(s): Falk Diedrichs, Meaghan Stolk, Karsten Jürchott, Marion Haag, Michael Sittinger, Martina Seifert
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pntd.0008699

Development of a multiplex microsphere immunoassay for the detection of antibodies against highly pathogenic viruses in human and animal serum samples
Cited by: 2
Author(s): Rebecca Surtees, Daniel Stern, Katharina Ahrens, Nicole Kromarek, Angelika Lander, Petra Kreher, Sabrina Weiß, Roger Hewson, Emma K. Punch, John N. Barr, Peter T. Witkowski, Emmanuel Couacy‐Hymann, Andrea Marzi, Brigitte G. Dorner, Andreas Kurth
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2021.695865

Prognosis and Characterization of Immune Microenvironment in Acute Myeloid Leukemia Through Identification of an Autophagy-Related Signature
Cited by: 19
Author(s): Denggang Fu, Biyu Zhang, Shiyong Wu, Yinghua Zhang, Jingwu Xie, Wangbin Ning, Hua Jiang
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-74705-6

Finding disease modules for cancer and COVID-19 in gene co-expression networks with the Core&amp;Peel method
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Author(s): Marta Lucchetta, Marco Pellegrini
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13104-016-2331-9

Differential correlation for sequencing data
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Author(s): Charlotte Siska, Katerina Kechris
Software Mentions: 5
Published: over 9 years ago

10.1186/s40168-021-01018-9

Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome
Cited by: 24
Author(s): Julien Tap, Stine Störsrud, Boris Le Nevé, Aurélie Cotillard, Nicolas Pons, Joël Doré, Lena Öhman, Hans Törnblom, Muriel Derrien, Magnus Simrén
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2021.657162

Host Transcriptome and Microbiota Signatures Prior to Immunization Profile Vaccine Humoral Responsiveness
Cited by: 3
Author(s): Eléna Gonçalves, Yolanda Guillén, Javier R. Lama, Jorge Sánchez, Christian Berthou, Roger Paredes, Béhazine Combadière
Software Mentions: 5
Published: about 5 years ago

10.1590/S1518-8787.2017051006766

Patient survival and risk of death after prostate cancer treatment in the Brazilian Unified Health System
Cited by: 2
Author(s): Sônia Faria Mendes Braga, Mírian Carvalho de Souza, Raphael Romie de Oliveira, Eli Iôla Gurgel Andrade, Francisco de Assis Acúrcio, Mariângela Leal Cherchiglia
Software Mentions: 5
Published: over 9 years ago

10.1186/s12885-021-08645-3

Gene-associated methylation status of ST14 as a predictor of survival and hormone receptor positivity in breast Cancer
Cited by: 3
Author(s): Yang-Hong Dai, Ying-Fu Wang, Po-Chien Shen, Cheng‐Hsiang Lo, Juxiang Yang, Chun‐Shu Lin, Hsing‐Lung Chao, Weimin Huang
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13059-021-02417-9

Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells
Cited by: 10
Author(s): Haifeng Fu, Weiyu Zhang, Niannian Li, Jiao Yang, Xiaoying Ye, Chenglei Tian, Xinyi Lu, Lin Liu
Software Mentions: 5
Published: about 5 years ago

10.1093/gbe/evz280

Differential Expression in Testis and Liver Transcriptomes from Four Species of Peromyscus (Rodentia: Cricetidae)
Cited by: 2
Author(s): Laramie L. Lindsey, Roy N. Platt, C. Douglas Phillips, David A. Ray, Robert D. Bradley
Software Mentions: 5
Published: over 6 years ago

10.1186/s42523-021-00080-w

The skin microbiome of Xenopus laevis and the effects of husbandry conditions
Cited by: 7
Author(s): Maya Z. Piccinni, Joy E. M. Watts, Marie Fourny, Matthew Guille, Samuel Robson
Software Mentions: 5
Published: over 5 years ago

10.1128/mSphere.00982-20

Decreased Ecological Resistance of the Gut Microbiota in Response to Clindamycin Challenge in Mice Colonized with the Fungus Candida albicans
Cited by: 2
Author(s): Laura Markey, Antonia Pugliese, Theresa Tian, Farrah Roy, Kyongbum Lee, Carol A. Kumamoto
Software Mentions: 5
Published: over 5 years ago

10.15252/emmm.201911115

Disease modeling of a mutation in α‐actinin 2 guides clinical therapy in hypertrophic cardiomyopathy
Cited by: 77
Author(s): Maksymilian Prondzynski, Marc D. Lemoine, Antonia T.L. Zech, András Horváth, Vittoria Di Mauro, Jussi T. Koivumäki, Nico Kresin, Josefine Busch, T. Krause, Elisabeth Krämer, Saskia Schlossarek, Michael Spohn, Felix W. Friedrich, Julia Münch, Sandra D. Laufer, Charles Redwood, Alexander E Volk, Arne Hansen, Giulia Mearini, Daniele Catalucci, Christian Meyer, Torsten Christ, Monica Patten, Thomas Eschenhagen, Lucie Carrier
Software Mentions: 5
Published: over 6 years ago

10.15252/emmm.201809456

Alternative oxidase‐mediated respiration prevents lethal mitochondrial cardiomyopathy
Cited by: 47
Author(s): Jayasimman Rajendran, Janne Purhonen, Saara Tegelberg, Olli‐Pekka Smolander, Matthias Mörgelin, Jan Rozman, Valérie Gailus‐Durner, Helmut Fuchs, Martin Hrabě de Angelis, Petri Auvinen, Eero Mervaala, Howard T. Jacobs, Marten Szibor, Vineta Fellman, Jukka Kallijärvi
Software Mentions: 5
Published: over 7 years ago

10.1002/cam4.2927

Identification of key lncRNAs in the tumorigenesis of intraductal pancreatic mucinous neoplasm by coexpression network analysis
Cited by: 11
Author(s): Jun Ding, Yang Li, Yong Zhang, Bin Fan, Qinghe Li, Jian Zhang
Software Mentions: 5
Published: over 6 years ago

10.15252/embj.2020105776

Cooperative genetic networks drive embryonic stem cell transition from naïve to formative pluripotency
Cited by: 22
Author(s): Andreas Lackner, Robert Sehlke, Marius Garmhausen, Giuliano Giuseppe Stirparo, Michelle Huth, Fabian Titz-Teixeira, Petra van der Lelij, Julia Ramesmayer, Henry F. Thomas, Markus Ralser, Laura Santini, Elena Galimberti, Mihail Sarov, A. Francis Stewart, Austin Smith, Andreas Beyer, Martin Leeb
Software Mentions: 5
Published: over 5 years ago

10.3390/biom10060845

The Effect of the Photoperiod on the Fatty Acid Profile and Weight in Hatchery-Reared Underyearlings and Yearlings of Atlantic Salmon Salmo salar L.
Cited by: 13
Author(s): Н. Н. Немова, З. А. Нефедова, С. Н. Пеккоева, Viktor P. Voronin, N. S. Shulgina, М. В. Чурова, С. А. Мурзина
Software Mentions: 5
Published: about 6 years ago

10.1186/s12879-021-06528-3

A systematic review of the sensitivity and specificity of lateral flow devices in the detection of SARS-CoV-2
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Author(s): Dylan A. Mistry, Jenny Wang, Mika-Erik Moeser, Thomas Starkey, Lee L
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-020-07180-y

Transcriptome analysis reveals mechanism of early ripening in Kyoho grape with hydrogen peroxide treatment
Cited by: 22
Author(s): Da‐Long Guo, Zhenguang Wang, Mao-Song Pei, Lili Guo, Yi‐He Yu
Software Mentions: 5
Published: over 5 years ago

10.1242/dmm.034124

Epigenetic regulators Rbbp4 and Hdac1 are overexpressed in a zebrafish model of RB1 embryonal brain tumor, and are required for neural progenitor survival and proliferation
Cited by: 37
Author(s): Linda Schultz, Jeffrey A. Haltom, Maira P. Almeida, Wesley A. Wierson, Staci L. Solin, Trevor Weiss, Jordan A Helmer, Elizabeth J. Sandquist, Heather R. Shive, Maura McGrail
Software Mentions: 5
Published: about 8 years ago

10.1242/dev.194761

Differential abilities to engage inaccessible chromatin diversify vertebrate HOX binding patterns
Cited by: 30
Author(s): Milica Bulajić, Divyanshi Srivastava, Jeremy S. Dasen, Hynek Wichterle, Shaun Mahony, Esteban O. Mazzoni
Software Mentions: 5
Published: over 6 years ago

10.1242/dev.184143

A single cell transcriptome atlas of the developing zebrafish hindbrain
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Author(s): Monica Tambalo, Richard Mitter, David Wilkinson
Software Mentions: 5
Published: over 6 years ago

10.1186/s13058-017-0814-9

DCYTB is a predictor of outcome in breast cancer that functions via iron-independent mechanisms
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Author(s): David J. Lemler, Miranda L. Lynch, Lia Tesfay, Zhiyong Deng, Bibbin T. Paul, Xiaohong Wang, Poornima Hegde, David H. Manz, Suzy V. Torti, Frank M. Torti
Software Mentions: 5
Published: over 9 years ago

10.1002/cam4.4054

Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer
Cited by: 11
Author(s): Xinyu Qu, Zhiwen Shi, Jingjing Guo, Chenyan Guo, Junjun Qiu, Keqin Hua
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.devcel.2018.12.026

Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis
Cited by: 32
Author(s): Toni Beltran, Consuelo Barroso, T. Y. Birkle, Lewis Stevens, Hillel T. Schwartz, Paul W. Sternberg, Hélène Fradin, Kristin C. Gunsalus, Fabio Piano, Garima Sharma, Chiara Cerrato, Julie Ahringer, Enrique Martínez-Pérez, Mark Blaxter, Peter Sarkies
Software Mentions: 5
Published: over 7 years ago

10.1038/s41392-020-00457-4

Longitudinal transcriptome analyses show robust T cell immunity during recovery from COVID-19
Cited by: 55
Author(s): Hong Zheng, Min Xu, Cui Xian Yang, Ren Rong Tian, Mi Zhang, Jian Jian Li, Xi Cheng Wang, Zhao Ding, Gui Mei Li, Xiaolu Li, Yu He, Xing-qi Dong, Yong Yao, Yong Zheng
Software Mentions: 5
Published: over 5 years ago

10.1038/s41420-019-0184-4

A six-inhibitor culture medium for improving naïve-type pluripotency of porcine pluripotent stem cells
Cited by: 15
Author(s): Ye Yuan, Jin‐Kyu Park, Yuchen Tian, Jungmin Choi, Rolando Pasquariello, Andrei P. Alexenko, Aihua Dai, Susanta K. Behura, R. Michael Roberts, Toshihiko Ezashi
Software Mentions: 5
Published: about 7 years ago

10.1186/s12864-021-07648-5

Transcriptome of different fruiting stages in the cultivated mushroom Cyclocybe aegerita suggests a complex regulation of fruiting and reveals enzymes putatively involved in fungal oxylipin biosynthesis
Cited by: 19
Author(s): Axel Orban, Annsophie Weber, Robert Herzog, Florian Hennicke, Martin Rühl
Software Mentions: 5
Published: about 5 years ago

10.3390/ijms21124199

CCR5-Mediated Signaling is Involved in Invasion of Glioblastoma Cells in Its Microenvironment
Cited by: 39
Author(s): Metka Novak, Miha Koprivnikar Krajnc, Barbara Hrastar, Barbara Breznik, Bernarda Majc, Mateja Mlinar, Ana Rotter, Andrej Porčnik, Jernej Mlakar, Katja Stare, Richard G. Pestell, Tamara Lah Turnšek
Software Mentions: 5
Published: about 6 years ago

10.1042/BSR20203231

Identification of an autophagy-related gene signature predicting overall survival for hepatocellular carcinoma
Cited by: 5
Author(s): Wenfang Xu, Wenxiu Guo, Ping Lü, Ding Ma, Lei Liu, Fudong Yu
Software Mentions: 5
Published: over 5 years ago

10.3389/fcvm.2021.717114

Long-Term Clinical Outcomes in Patients With an Acute ST-Segment-Elevation Myocardial Infarction Stratified by Angiography-Derived Index of Microcirculatory Resistance
Cited by: 21
Author(s): Rafail A. Kotronias, Dimitrios Terentes‐Printzios, Mayooran Shanmuganathan, Federico Marin, Roberto Scarsini, James Bradley-Watson, Jeremy P. Langrish, Andrew J. Lucking, Robin P. Choudhury, Rajesh Kharbanda, Héctor M. García‐García, Keith M. Channon, Giovanni Luigi De Maria
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0187344

Assessing risk of fibrosis progression and liver-related clinical outcomes among patients with both early stage and advanced chronic hepatitis C
Cited by: 23
Author(s): Monica A. Konerman, Dongxia Lu, Yiwei Zhang, Mary Thomson, Ji Zhu, Aashesh Verma, Boang Liu, Nizar Talaat, Ulysses Balis, Peter Higgins, Anna S. Lok, Akbar K. Waljee
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-021-07552-y

Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential
Cited by: 20
Author(s): Juanita Engelbrecht, Tuan A. Duong, S. Prabhu, Mohamed Seedat, Noëlani van den Berg
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-017-14451-4

Expression and regulation of long noncoding RNAs during the osteogenic differentiation of periodontal ligament stem cells in the inflammatory microenvironment
Cited by: 13
Author(s): Qingbin Zhang, Li Chen, Shiman Cui, Yan Li, Qi Zhao, Weimin Cao, Shixiang Lai, Sanjun Yin, Zhixiang Zuo
Software Mentions: 5
Published: over 8 years ago

10.3390/ijms22041778

Association of Maternal Microbiota and Diet in Cord Blood Cytokine and Immunoglobulin Profiles
Cited by: 11
Author(s): Karla Rio-Aigé, Ignasi Azagra-Boronat, Malén Massot-Cladera, Marta Selma‐Royo, Anna Parra-Llorca, Sonia González, Izaskun García-Mantrana, Cristina Castellote, María J. Rodríguez-Lagunas, María Carmen Collado, Francisco J. Pérez-Cano
Software Mentions: 5
Published: over 5 years ago

10.1155/2021/6642939

Identification of a Potential PPAR-Related Multigene Signature Predicting Prognosis of Patients with Hepatocellular Carcinoma
Cited by: 7
Author(s): Wenfang Xu, Zhe Chen, Gang Liu, Yong Dai, Xuanfu Xu, Duan Ma, Lei Liu
Software Mentions: 5
Published: over 5 years ago

10.1016/j.celrep.2019.09.082

DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data
Cited by: 120
Author(s): Erica A. K. DePasquale, Daniel Schnell, Pieter-Jan Van Camp, Íñigo Valiente-Alandí, Burns C. Blaxall, H. Leighton Grimes, Harinder Singh, Nathan Salomonis
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pgen.1009726

The genetic consequences of dog breed formation—Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels
Cited by: 8
Author(s): Erik Axelsson, Ingrid Ljungvall, Priyasma Bhoumik, Laura Bas Conn, Eva Murén, Åsa Ohlsson, Lisbeth H. Olsen, Karolina Engdahl, Ragnvi Hagman, Jeanette Hanson, Dmytro Kryvokhyzha, Mats E. Pettersson, Olivier Grenet, Jonathan G. Moggs, Alberto Del Río-Espínola, Christian Epe, Bruce E. Taillon, Nilesh R. Tawari, Shrinivas Mane, Troy Hawkins, Åke Hedhammar, Philippe Gruet, Jens Häggström, Kerstin Lindblad‐Toh
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.celrep.2019.11.066

Molecular Basis for Autosomal-Dominant Renal Fanconi Syndrome Caused by HNF4A
Cited by: 28
Author(s): Valentina Marchesin, Albert Pérez-Martí, G. Le Meur, Roman Pichler, Kelli Grand, Enriko Klootwijk, Anne Kesselheim, Robert Kleta, Soeren S. Lienkamp, Matias Simons
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.34226

Gene family innovation, conservation and loss on the animal stem lineage
Cited by: 144
Author(s): Daniel J. Richter, Parinaz Fozouni, Michael B. Eisen, Nicole King
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0135350

Conservation Status of North American Birds in the Face of Future Climate Change
Cited by: 90
Author(s): Gary Langham, Justin G. Schuetz, Trisha Distler, Candan U. Soykan, Chad B. Wilsey
Software Mentions: 5
Published: almost 11 years ago

10.1371/journal.pone.0182734

Departure time influences foraging associations in little penguins
Cited by: 5
Author(s): Grace J. Sutton, Andrew J. Hoskins, Maud Berlincourt, John P. Y. Arnould
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12917-016-0723-7

Implementation of an extended ZINB model in the study of low levels of natural gastrointestinal nematode infections in adult sheep
Cited by: 7
Author(s): Marina Atlija, Joaquín M. Prada, Beatriz Gutiérrez-Gil, F.A. Rojo-Vázquez, M. J. Stear, J. J. Arranz, María Martínez‐Valladares
Software Mentions: 5
Published: about 10 years ago

10.1186/s12917-017-1145-x

Estimation of the sensitivity and specificity of two serum ELISAs and one fecal qPCR for diagnosis of paratuberculosis in sub-clinically infected young-adult French sheep using latent class Bayesian modeling
Cited by: 20
Author(s): Yoann Mathevon, Gilles Foucras, Rémy Falguières, Fabien Corbière
Software Mentions: 5
Published: almost 9 years ago

10.1016/j.cell.2018.09.043

Identification, Characterization, and Heritability of Murine Metastable Epialleles: Implications for Non-genetic Inheritance
Cited by: 111
Author(s): Anastasiya Kazachenka, Tessa M. Bertozzi, Marcela K. Sjoberg-Herrera, N Walker, Joseph Gardner, Richard Gunning, Eleni Pahita, Sarah Adams, David J. Adams, Anne C. Ferguson-Smith
Software Mentions: 5
Published: over 7 years ago

10.1002/bimj.201100251

Regression trees for predicting mortality in patients with cardiovascular disease: What improvement is achieved by using ensemble‐based methods?
Cited by: 58
Author(s): Peter C. Austin, Douglas S. Lee, Ewout W. Steyerberg, Jack V. Tu
Software Mentions: 5
Published: about 14 years ago

10.1016/j.cell.2021.03.062

Splice site m6A methylation prevents binding of U2AF35 to inhibit RNA splicing
Cited by: 88
Author(s): Mateusz Mendel, Kamila Delaney, Radha Raman Pandey, Kuan-Ming Chen, Joanna M. Wenda, Cathrine Broberg Vågbø, Florian Steiner, David Homolka, Ramesh S. Pillai
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2105-14-169

Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data
Cited by: 21
Author(s): Yanchun Bao, Veronica Vinciotti, Ernst Wit, Peter A C ‘t Hoen
Software Mentions: 5
Published: about 13 years ago

10.1186/s12887-020-02411-3

Utility of medical record diagnostic codes to ascertain attention-deficit/hyperactivity disorder and learning disabilities in populations of children
Cited by: 6
Author(s): Yu Shi, Phillip J. Schulte, Andrew C. Hanson, Michael J. Zaccariello, Dayu Hu, Sheri Crow, Randall P. Flick, David O. Warner
Software Mentions: 5
Published: over 5 years ago

10.1186/s13058-019-1230-0

Elacestrant (RAD1901) exhibits anti-tumor activity in multiple ER+ breast cancer models resistant to CDK4/6 inhibitors
Cited by: 44
Author(s): Hemang Patel, Nianjun Tao, Kyung Min Lee, Mariela Huerta, Heike Arlt, Tara Mullarkey, Steven Troy, Carlos L. Arteaga, Teeru Bihani
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2288-14-99

Detection of independent associations in a large epidemiologic dataset: a comparison of random forests, boosted regression trees, conventional and penalized logistic regression for identifying independent factors associated with H1N1pdm influenza infections
Cited by: 33
Author(s): Yohann Mansiaux, Fabrice Carrat
Software Mentions: 5
Published: almost 12 years ago