Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1534/g3.116.030783

https://doi.org/10.1534/g3.116.030783

ChloroSeq, an Optimized Chloroplast RNA-Seq Bioinformatic Pipeline, Reveals Remodeling of the Organellar Transcriptome Under Heat Stress

Cited by: 47
Author(s): Benoît Castandet, Amber M. Hotto, Susan R. Strickler, David B. Stern
Published: about 8 years ago

Software Mentions 5

cran: BED
Biological Entity Dictionary (BED)
Papers that mentioned: 49
pypi: dump
Wrapper around psql and pg_dump to make it easier to backup/restore a PostgreSQL database
Papers that mentioned: 6
pypi: gff3
Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files.
Papers that mentioned: 36
pypi: sh
Python subprocess replacement
Papers that mentioned: 48
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017