10.1111/acel.13230

COVID‐19 is an emergent disease of aging
Cited by: 91
Author(s): Didac Santesmasses, José Pedro Castro, Aleksandr Zenin, Anastasia V. Shindyapina, Maxim V. Gerashchenko, Bohan Zhang, Csaba Kerepesi, Sun Hee Yim, П. О. Федичев, Vadim N. Gladyshev
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0247037

A new perspective and assessment measure for common dissociative experiences: ‘Felt Sense of Anomaly’
Cited by: 10
Author(s): Emma Černis, Esther T. Beierl, Andrew Molodynski, Anke Ehlers, Daniel Freeman
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0164178

Current and Future Distribution of the Tropical Tree Cedrela odorata L. in Mexico under Climate Change Scenarios Using MaxLike
Cited by: 17
Author(s): Israel Estrada‐Contreras, Miguel Equihua, Javier Laborde, Enrique Martínez‐Meyer, Lázaro Rafael Sánchez-Velásquez
Software Mentions: 5
Published: almost 10 years ago

10.1186/s13059-019-1840-y

Genetic regulation of gene expression and splicing during a 10-year period of human aging
Cited by: 38
Author(s): Brunilda Balliu, Matthew G. Durrant, Olivia de Goede, Nathan S. Abell, Li X, Boxiang Liu, Michael J. Gloudemans, Naomi L. Cook, Kevin S. Smith, David A. Knowles, Mauro Pala, Francesco Cucca, David Schlessinger, Siddhartha Jaiswal, Chiara Sabatti, Lars Lind, Erik Ingelsson, Stephen B. Montgomery
Software Mentions: 5
Published: over 6 years ago

10.3390/s120608145

Accuracy and Precision of Equine Gait Event Detection during Walking with Limb and Trunk Mounted Inertial Sensors
Cited by: 49
Author(s): E. G. J. Olsen, Pia Haubro Andersen, Thilo Pfau
Software Mentions: 5
Published: about 14 years ago

10.7150/thno.55209

<i>Candida albicans</i> disorder is associated with gastric carcinogenesis
Cited by: 48
Author(s): Min Zhong, Yubo Xiong, Jiabao Zhao, Zhi Gao, Jianchao Ma, Zhengxin Wu, Yongxi Song, Xuehui Hong
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-019-0775-6

Root ethylene mediates rhizosphere microbial community reconstruction when chemically detecting cyanide produced by neighbouring plants
Cited by: 89
Author(s): Yan Chen, Michael Bonkowski, Yi Shen, Bryan S. Griffiths, Yuji Jiang, Xiaoyue Wang, Bo Sun
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.12198

Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets
Cited by: 16
Author(s): Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-019-43268-6

Structure and stability of the coral microbiome in space and time
Cited by: 60
Author(s): Courtney M. Dunphy, Tarik C. Gouhier, Nathaniel D. Chu, Steven V. Vollmer
Software Mentions: 5
Published: about 7 years ago

10.1093/molbev/msz099

Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae)
Cited by: 72
Author(s): Marc Tollis, Jooke Robbins, Andrew E. Webb, Lukas F. K. Kuderna, Aleah F. Caulin, Jacinda D Garcia, Martine Bérubé, Nader Pourmand, Tomàs Marquès-Bonet, Mary J. O’Connell, Per Palsbøll, Carlo C. Maley
Software Mentions: 5
Published: about 7 years ago

10.3389/fgene.2021.644516

G2S: A New Deep Learning Tool for Predicting Stool Microbiome Structure From Oral Microbiome Data
Cited by: 5
Author(s): Simone Rampelli, Marco Fabbrini, Marco Candela, Elena Biagi, Patrizia Brigidi, Silvia Turroni
Software Mentions: 5
Published: over 5 years ago

10.3389/fbioe.2020.00808

Riboflow: Using Deep Learning to Classify Riboswitches With ∼99% Accuracy
Cited by: 6
Author(s): Keshav Aditya R Premkumar, Ramit Bharanikumar, Ashok Palaniappan
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0204920

Predicting acute kidney injury at hospital re-entry using high-dimensional electronic health record data
Cited by: 8
Author(s): Samuel J. Weisenthal, Caroline M. Quill, Samir A. Farooq, Henry Kautz, Martin S. Zand
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj-cs.413

Predictions of bitcoin prices through machine learning based frameworks
Cited by: 17
Author(s): Luisanna Cocco, Roberto Tonelli, Michele Marchesi
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-020-06821-6

On tower and checkerboard neural network architectures for gene expression inference
Cited by: 0
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 5
Published: over 5 years ago

10.1186/s12885-020-07689-1

Prognostic implications of alcohol dehydrogenases in hepatocellular carcinoma
Cited by: 25
Author(s): Xiangye Liu, Tingting Li, Delong Kong, Hua You, Fanyun Kong, Renxian Tang
Software Mentions: 5
Published: over 5 years ago

10.1186/s12898-017-0141-0

Environmental drivers of Ixodes ricinus abundance in forest fragments of rural European landscapes
Cited by: 42
Author(s): Steffen Ehrmann, Jaan Liira, Stefanie Gärtner, Karin Hansen, Jörg Brunet, Sara A. O. Cousins, Marc Deconchat, Guillaume Decocq, Pieter De Frenne, Pallieter De Smedt, Martin Diekmann, Emilie Gallet‐Moron, Annette Kolb, Jonathan Lenoir, Jessica Lindgren, Tobias Naaf, Taavi Paal, Alicia Valdés, Kris Verheyen, Monika Wulf, Michael Scherer‐Lorenzen
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12859-020-03730-z

SAPPHIRE: a neural network based classifier for σ70 promoter prediction in Pseudomonas
Cited by: 29
Author(s): Lucas Coppens, Rob Lavigne
Software Mentions: 5
Published: almost 6 years ago

10.3390/genes10060427

Genomic Evidence of Recombination in the Basidiomycete Wallemia mellicola
Cited by: 10
Author(s): Xiaohuan Sun, Cene Gostinčar, Chao Fang, Janja Zajc, Yong Hou, Zewei Song, Nina Gunde‐Cimerman
Software Mentions: 5
Published: about 7 years ago

10.1002/pro.3783

The Dundee Resource for Sequence Analysis and Structure Prediction
Cited by: 11
Author(s): Stuart A. MacGowan, Fábio Madeira, Thiago Britto‐Borges, Mateusz Warowny, Alexey Drozdetskiy, James B. Procter, Geoffrey J. Barton
Software Mentions: 5
Published: over 6 years ago

10.1093/gerona/glab061

The Association Between Injurious Falls and Older Adults’ Cognitive Function: The Role of Depressive Mood and Physical Performance
Cited by: 7
Author(s): Caterina Trevisan, Enrico Ripamonti, Giulia Grande, Federico Triolo, Stina Ek, Stefania Maggi, Giuseppe Sergi, Laura Fratiglioni, Anna-Karin Welmer
Software Mentions: 5
Published: over 5 years ago

10.1186/s12863-020-0821-1

Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues
Cited by: 6
Author(s): Jaroslav Klápště, Dean F. Meason, Heidi S. Dungey, Emily Telfer, Paul Silcock, Simon Rapley
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-021-07755-3

Identification of candidate genomic regions for chicken egg number traits based on genome-wide association study
Cited by: 10
Author(s): Xiurong Zhao, Changsheng Nie, Jinxin Zhang, Xinghua Li, Tao Zhu, Zi Guan, Yu Chen, Liang Wang, Xue Ze Lv, Weijia Yang, Yaxiong Jia, Zhonghua Ning, Haiying Li, Changqing Qu, Huie Wang, Lujiang Qu
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-020-6665-2

The effect of antibiotics on the gut microbiome: a metagenomics analysis of microbial shift and gut antibiotic resistance in antibiotic treated mice
Cited by: 37
Author(s): Lei Xu, Anil Surathu, Isaac Raplee, Ashok Chockalingam, Sharron Stewart, Lacey Walker, Leonard Sacks, Vikram Patel, Zhihua Li, Rodney Rouse
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-57110-6

Single-cell transcriptional profiles in human skeletal muscle
Cited by: 160
Author(s): Aliza Rubenstein, Gregory R. Smith, Ulrika Raue, Gwénaëlle Begue, Kiril Minchev, Frederique Ruf-Zamojski, Venugopalan D. Nair, Xingyu Wang, Lan Zhou, Elena Zaslavsky, Todd A. Trappe, Scott Trappe, Stuart C. Sealfon
Software Mentions: 5
Published: over 6 years ago

10.1002/1878-0261.12070

Synergistic activity of everolimus and 5-aza-2′-deoxycytidine in medullary thyroid carcinoma cell lines
Cited by: 23
Author(s): Giovanna Mantovani, Alessandra Dicitore, Daniele Pepe, Davide Gentilini, Elisa Grassi, Maria Orietta Borghi, Giulia Gelmini, Maria Celeste Cantone, Germano Gaudenzi, Gabriella Misso, Anna Maria Di Blasio, Leo J. Hofland, Michele Caraglia, Luca Persani
Software Mentions: 5
Published: about 9 years ago

10.1186/s12864-016-2819-7

An evaluation of processing methods for HumanMethylation450 BeadChip data
Cited by: 52
Author(s): Jie Liu, Kimberly D. Siegmund
Software Mentions: 5
Published: about 10 years ago

10.1186/s12935-020-01294-9

A robust twelve-gene signature for prognosis prediction of hepatocellular carcinoma
Cited by: 46
Author(s): Guoqing Ouyang, Bin Yi, Guangdong Pan, Xiang Chen
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-66178-4

Comparison of lung microbiota between antineutrophil cytoplasmic antibody-associated vasculitis and sarcoidosis
Cited by: 5
Author(s): Shoichi Fukui, Shimpei Morimoto, Kunihiro Ichinose, Shota Nakashima, Hiroshi Ishimoto, Atsuko Hara, Tomoyuki Kakugawa, Noriho Sakamoto, Yoshika Tsuji, Toshiyuki Aramaki, Tomohiro Koga, Shin‐ya Kawashiri, Naoki Iwamoto, Mami Tamai, Hideki Nakamura, Tomoki Origuchi, Yukitaka Ueki, Shino Suzuki, Hiroshi Mukae, Atsushi Kawakami
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-018-29320-x

Endocervical and vaginal microbiota in South African adolescents with asymptomatic Chlamydia trachomatis infection
Cited by: 35
Author(s): Christina Balle, Katie Lennard, Smritee Dabee, Shaun Barnabas, Shameem Z. Jaumdally, Melanie A. Gasper, Venessa Maseko, Zizipho Z. A. Mbulawa, Anna‐Lise Williamson, Linda‐Gail Bekker, David A. Lewis, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-020-66759-3

The seed water content as a time-independent physiological trait during germination in wild tree species such as Ceiba aesculifolia
Cited by: 6
Author(s): Ximena Gómez‐Maqueo, Diana Soriano, Noé Velázquez-Rosas, Sandra Alvarado-López, Karina Jiménez‐Durán, María Del Mar Garciadiego, Alicia Gamboa‐deBuen
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-70131-w

Transcriptomic profile of adverse neurodevelopmental outcomes after neonatal encephalopathy
Cited by: 6
Author(s): Paolo Montaldo, Aubrey J. Cunnington, Vânia Oliveira, Ravi Swamy, Prathik Bandya, Stuti Pant, Peter J Lally, Phoebe Ivain, Josephine Mendoza, Gaurav Atreja, Padmesh Vadakepat, Mythili Baburaj, Monica Sebastian, Indiramma Yasashwi, Chinnathambi Kamalarathnam, Rema Chandramohan, Mangalabharathi Sundaram, Kumutha Kumaraswami, Shobha Kumar, Naveen Benakappa, Swati Manerkar, Jayashree Mondhkar, Vinayagam Prakash, Mohammed Sajjid, Arasar Seeralar, Ismat Jahan, Sadeka Choudhury Moni, Mohammod Shahidullah, Radhika Sujatha, M Chandrasekaran, Siddarth Ramji, Seetha Shankaran, Myrsini Kaforou, Jethro Herberg, Sudhin Thayyil
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-016-0189-7

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions
Cited by: 274
Author(s): Mehrbod Estaki, Jason Pither, Peter Baumeister, Jonathan P. Little, S K Gill, Sanjoy Ghosh, Ahmadi-Vand Zahra, Katelyn Marsden, Deanna L. Gibson
Software Mentions: 5
Published: almost 10 years ago

10.1186/s12859-019-3100-2

RACS: rapid analysis of ChIP-Seq data for contig based genomes
Cited by: 4
Author(s): Marcelo Ponce, Alejandro Saettone, Syed Nabeel‐Shah, Jeffrey Fillingham
Software Mentions: 5
Published: over 6 years ago

10.1186/gb-2014-15-4-r56

Hypermethylation in the ZBTB20 gene is associated with major depressive disorder
Cited by: 84
Author(s): Matthew N. Davies, Lutz Krause, Jordana T. Bell, Fei Gao, Kirsten Ward, Honglong Wu, Hanlin Lu, Yuan Liu, Pei-Chien Tsai, David A. Collier, Therese M. Murphy, Emma Dempster, Jonathan Mill, Alexis Battle, Sara Mostafavi, Xiaowei Zhu, Anjali K. Henders, Enda M. Byrne, Naomi R. Wray, Nicholas G. Martin, Tim D. Spector, Jun Wang
Software Mentions: 5
Published: over 12 years ago

10.1002/ece3.7150

Contrasting patterns in the occurrence and biomass centers of gravity among fish and macroinvertebrates in a continental shelf ecosystem
Cited by: 10
Author(s): Kevin D. Friedland, Szymon Smoliński, Kisei R. Tanaka
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.8717

Genomic analysis of variability in Delta-toxin levels between <i>Staphylococcus aureus</i> strains
Cited by: 10
Author(s): Michelle Su, James T. Lyles, Robert A. Petit, Jessica Peterson, Michelle Hargita, Huaqiao Tang, Claudia Solís-Lemus, Cassandra L. Quave, Timothy D. Read
Software Mentions: 5
Published: over 6 years ago

10.1038/s41396-020-00885-8

Comparative genomics reveals new functional insights in uncultured MAST species
Cited by: 17
Author(s): Aurélie Labarre, Lior David, Francisco Latorre, Guy Leonard, François Bucchini, Aleix Obiol, Corinne Cruaud, Michael E. Sieracki, Olivier Jaillon, Patrick Wincker, Klaas Vandepoele, Ramiro Logares, Ramón Massana
Software Mentions: 5
Published: over 5 years ago

10.1007/s00330-020-06957-9

Reliability and prognostic value of radiomic features are highly dependent on choice of feature extraction platform
Cited by: 104
Author(s): Isabella Fornacon-Wood, Hitesh Mistry, Christoph Ackermann, Fiona Blackhall, A. McPartlin, Corinne Faivre-Finn, Gareth J Price, James P.B. O’Connor
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-75128-z

Novel genomic targets of valosin-containing protein in protecting pathological cardiac hypertrophy
Cited by: 5
Author(s): Ning Zhou, Xin Chen, Jing Xi, Ben Ma, Christiana Leimena, Shaunrick Stoll, Gangjian Qin, Charles Wang, Hongyu Qiu
Software Mentions: 5
Published: over 5 years ago

10.1126/sciimmunol.abe4782

Severely ill patients with COVID-19 display impaired exhaustion features in SARS-CoV-2–reactive CD8 ⁺ T cells
Cited by: 163
Author(s): Anthony Kusnadi, Ciro Ramírez-Suástegui, Vicente Fajardo, Serena Chee, Benjamin J Meckiff, Hayley Simon, Emanuela Pelosi, Grégory Seumois, Ferhat Ay, Pandurangan Vijayanand, Christian Ottensmeier
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-76769-w

GIANT: galaxy-based tool for interactive analysis of transcriptomic data
Cited by: 8
Author(s): Jimmy Vandel, Céline Gheeraert, Bart Staels, Jérôme Eeckhoute, Philippe Lefèbvre, Julie Dubois-Chevalier
Software Mentions: 5
Published: over 5 years ago

10.1186/s40064-015-1356-1

Accurate mobile malware detection and classification in the cloud
Cited by: 26
Author(s): Xiaolei Wang, Yuexiang Yang, Yingzhi Zeng
Software Mentions: 5
Published: almost 11 years ago

10.1038/s41598-020-78288-0

Common and personal target genes of the micronutrient vitamin D in primary immune cells from human peripheral blood
Cited by: 19
Author(s): Andrea Hanel, Antonio Neme, Marjo Malinen, Emmi Hämäläinen, Henna-Riikka Malmberg, Stéphane Etheve, Tomi‐Pekka Tuomainen, Jyrki K. Virtanen, Igor Bendik, Carsten Carlberg
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-020-07183-9

A new method for long-read sequencing of animal mitochondrial genomes: application to the identification of equine mitochondrial DNA variants
Cited by: 7
Author(s): Sophie Dhorne–Pollet, Éric Barrey, Nicolas Pollet
Software Mentions: 5
Published: over 5 years ago

10.1186/s12889-018-5140-3

The role of venues in structuring HIV, sexually transmitted infections, and risk networks among men who have sex with men
Cited by: 6
Author(s): Lydia N Drumright, Sharon S. Weir, Simon D. W. Frost
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-018-4541-0

Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma
Cited by: 8
Author(s): Shannon J. O’Leary, Christopher M. Hollenbeck, Robert R. Vega, John R. Gold, David S. Portnoy
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-020-07027-6

Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome
Cited by: 21
Author(s): Yiqian Li, Wenyan Nong, Tobias Baril, Ho Yin Yip, Thomas Swale, Alexander Hayward, David Ferrier, Jerome H. L. Hui
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-80557-x

Gut microbiome is affected by inter-sexual and inter-seasonal variation in diet for thick-billed murres (Uria lomvia)
Cited by: 33
Author(s): Esteban Góngora, Kyle H. Elliott, Lyle G. Whyte
Software Mentions: 5
Published: over 5 years ago

10.1126/sciadv.aau4578

Fungal diversity regulates plant-soil feedbacks in temperate grassland
Cited by: 134
Author(s): Marina Semchenko, Jonathan W. Leff, Yudi M. Lozano, Sirgi Saar, John Davison, Anna Wilkinson, Benjamin G. Jackson, William J. Pritchard, Jonathan R. De Long, Simon Oakley, Kelly E. Mason, Nicholas J. Ostle, Elizabeth M. Baggs, David Johnson, Noah Fierer, Richard D. Bardgett
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pgen.1003460

Continent-Wide Decoupling of Y-Chromosomal Genetic Variation from Language and Geography in Native South Americans
Cited by: 91
Author(s): Lutz Roewer, Michael Nothnagel, Leonor Gusmão, Verónica Gomes, Miguel González, Daniel Corach, Andrea Sala, Evguenia Alechine, Teresinha de Jesus Brabo Ferreira Palha, Ney Pereira Carneiro dos Santos, Ândrea Ribeiro-dos-Santos, Martin Geppert, Sascha Willuweit, Marion Nagy, Sarah Zweynert, Miriam Baeta, Carolina Núñez, Begoña Martı́nez-Jarreta, Fabricio González-Andrade, E.F. Carvalho, Dayse A. Silva, J.J. Builes, Daniel Turbón, A.M. López-Parra, Eduardo Arroyo-Pardo, Ulises Toscanini, Lisbeth Borjas, Claudia Barletta-Carrillo, Elizabeth Ewart, Sidney Emanuel Batista dos Santos, Michael Krawczak
Software Mentions: 5
Published: over 13 years ago

10.1038/s41598-021-84497-y

Gut microbiota resilience in horse athletes following holidays out to pasture
Cited by: 15
Author(s): Núria Mach, Léa Lansade, David Bars-Cortina, Sophie Dhorne–Pollet, Aline Foury, Marie‐Pierre Moisan, Alice Ruet
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-85669-6

Transcriptome of rhesus macaque (Macaca mulatta) exposed to total-body irradiation
Cited by: 12
Author(s): Yaoxiang Li, Jatinder Singh, Rency S. Varghese, Yubo Zhang, Oluseyi O. Fatanmi, Amrita K. Cheema, Vijay K. Singh
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.00481

Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype
Cited by: 40
Author(s): Gregory Bonito, Gian Maria Niccolò Benucci, Khalid Hameed, Deborah Weighill, Piet Jones, Ko‐Hsuan Chen, Daniel Jacobson, Christopher W. Schadt, Rytas Vilgalys
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.4500

A metabarcoding approach for the feeding habits of European hake in the Adriatic Sea
Cited by: 17
Author(s): Giulia Riccioni, Marco Stagioni, Corrado Piccinetti, Simone Libralato
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0212185

Physical environmental conditions determine ubiquitous spatial differentiation of standing plants and seedbanks in Neotropical riparian dry forests
Cited by: 2
Author(s): Alejandra De León Ibarra, Néstor A. Mariano, Valentino Sorani, Gabriel Flores‐Franco, Evodio Rendón Alquicira, Elisabet V. Wehncke
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0255391

Not just trash birds: Quantifying avian diversity at landfills using community science data
Cited by: 9
Author(s): Zachary J. Arnold, Seth J. Wenger, Richard J. Hall
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.11898

Biogeography, diversity and environmental relationships of shelf and deep-sea benthic Amphipoda around Iceland
Cited by: 7
Author(s): Anne‐Nina Lörz, Stefanie Kaiser, Jens Oldeland, Caroline Stolter, Karlotta Kürzel, Saskia Brix
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.7014

Soil bacterial and fungal communities of six bahiagrass cultivars
Cited by: 10
Author(s): Lukas Beule, Ko‐Hsuan Chen, Chih‐Ming Hsu, Cheryl L. Mackowiak, José C. B. Dubeux, Ann R. Blount, Hui‐Ling Liao
Software Mentions: 5
Published: about 7 years ago

10.1186/s40168-020-00858-1

Using soil bacterial communities to predict physico-chemical variables and soil quality
Cited by: 113
Author(s): Syrie M. Hermans, Hannah Buckley, Bradley S. Case, Fiona Curran-Cournane, Mykel R. Taylor, Gavin Lear
Software Mentions: 5
Published: about 6 years ago

10.1120/jacmp.v16i3.5634

2015 AAPM Spring Clinical Meeting - Abstracts
Cited by: 0
Author(s):
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-018-33681-8

Pathogen Identification Direct From Polymicrobial Specimens Using Membrane Glycolipids
Cited by: 17
Author(s): William E. Fondrie, Tao Liang, Benjamin L. Oyler, Lisa M. Leung, Robert K. Ernst, Dudley K. Strickland, David R. Goodlett
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0251213

Environmental impacts on single-cell variation within a ubiquitous diatom: The role of growth rate
Cited by: 5
Author(s): Elisabeth Groß, Maarten Boersma, Cédric L. Meunier
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-93003-3

A pan-cancer transcriptomic study showing tumor specific alterations in central metabolism
Cited by: 10
Author(s): Ilir Sheraj, Tülïn Güray, Sreeparna Banerjee
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-34412-9

RNA-Seq transcriptomic profiling of primary murine microglia treated with LPS or LPS + IFNγ
Cited by: 29
Author(s): Marta Pulido-Salgado, José M. Vidal-Taboada, Gerardo Garcıa-Dıaz Barriga, Carme Solà, Josep Saura
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-40910-1

Phosphorus source driving the soil microbial interactions and improving sugarcane development
Cited by: 25
Author(s): Thiago Gumière, Alain N. Rousseau, Diogo Paes da Costa, Alice de Souza Cassetari, Simone Raposo Cotta, Fernando Dini Andreote, Silvio José Gumière, Paulo Sérgio Pavinato
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-018-21118-1

The utility of a network–based clustering method for dimension reduction of imaging and non-imaging biomarkers predictive of Alzheimer’s disease
Cited by: 2
Author(s): Haruhiko Yoshida, Atsushı Kawaguchi, Fumio Yamashita, Kazuhiko Tsuruya
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.ppat.1004856

An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation
Cited by: 27
Author(s): Jason E. Shoemaker, Satoru Fukuyama, Amie J. Eisfeld, Dongming Zhao, Eiryo Kawakami, Saori Sakabe, Tadashi Maemura, Takeo Gorai, Hiroaki Katsura, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Ken Fuji, Yoshikazu Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka
Software Mentions: 5
Published: about 11 years ago

10.3389/fmicb.2021.655567

Molecular Evolution of Human Norovirus GII.2 Clusters
Cited by: 7
Author(s): Xingguang Li, Haizhou Liu, Brittany Rife Magalis, Sergei L. Kosakovsky Pond, Erik Volz
Software Mentions: 5
Published: over 5 years ago

10.3390/jcm9092930

Proteomic Profiles of Exosomes of Septic Patients Presenting to the Emergency Department Compared to Healthy Controls
Cited by: 8
Author(s): Daniel C. Morris, Anja Kathrin Jaehne, Michael Chopp, Zhanggang Zhang, Laila Poisson, Yalei Chen, Indrani Datta, Emanuel P. Rivers
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.7946

Restored and remnant Banksia woodlands elicit different foraging behavior in avian pollinators
Cited by: 2
Author(s): Alison Ritchie, Catherine Elliott, Elizabeth A. Sinclair, Siegfried L. Krauss
Software Mentions: 5
Published: almost 5 years ago

10.1007/s43926-021-00016-5

Social media analytics of the Internet of Things
Cited by: 4
Author(s): Jim Scheibmeir, Yashwant K. Malaiya
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0151342

Mining Social Entrepreneurship Strategies Using Topic Modeling
Cited by: 23
Author(s): Yanto Chandra, Li Jiang, Chengjun Wang
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0134509

A Social Network Approach Reveals Associations between Mouse Social Dominance and Brain Gene Expression
Cited by: 103
Author(s): Nina L. T. So, Becca Franks, Sean C. Lim, James P. Curley
Software Mentions: 5
Published: almost 11 years ago

10.1371/journal.pone.0251458

Statistical privacy-preserving message broadcast for peer-to-peer networks
Cited by: 1
Author(s): David Mödinger, Jan-Hendrik Lorenz, Franz J. Hauck
Software Mentions: 5
Published: about 5 years ago

10.1007/s11306-015-0927-z

GC–MS metabolic profiling of Cabernet Sauvignon and Merlot cultivars during grapevine berry development and network analysis reveals a stage- and cultivar-dependent connectivity of primary metabolites
Cited by: 51
Author(s): Álvaro Cuadros-Inostroza, Simón Ruíz-Lara, Enrique González, Änne Eckardt, Lothar Willmitzer, Hugo Peña‐Cortés
Software Mentions: 5
Published: over 10 years ago

10.1007/s00265-015-2050-6

Sex and friendship in a multilevel society: behavioural patterns and associations between female and male Guinea baboons
Cited by: 51
Author(s): Adeelia S. Goffe, Dietmar Zinner, Julia Fischer
Software Mentions: 5
Published: over 10 years ago

10.1534/g3.119.400770

Experimental DNA Demethylation Associates with Changes in Growth and Gene Expression of Oak Tree Seedlings
Cited by: 10
Author(s): Luke Browne, Alayna Mead, Courtney Horn, Kevin W. Chang, Zeynep A Celikkol, Claudia L. Henriquez, Feiyang Ma, Eric Beraut, Rachel S. Meyer, Victoria L. Sork
Software Mentions: 5
Published: over 6 years ago

10.3390/jof6030180

Stem Endophytic Mycobiota in Wild and Domesticated Wheat: Structural Differences and Hidden Resources for Wheat Improvement
Cited by: 17
Author(s): Xiang Sun, Evsey Kosman, Amir Sharon
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12864-020-6517-0

Repetitive DNA content in the maize genome is uncoupled from population stratification at SNP loci
Cited by: 2
Author(s): Simon Renny‐Byfield, Andy Baumgarten
Software Mentions: 5
Published: over 6 years ago

10.3390/ani10081321

Social Experience of Captive Livingstone’s Fruit Bats (Pteropus livingstonii)
Cited by: 7
Author(s): Morgan J. Welch, Teresa M. Smith, Charlotte A. Hosie, Dominic Wormell, Eluned C. Price, Christina R. Stanley
Software Mentions: 5
Published: almost 6 years ago

10.3389/fvets.2021.699352

The Impact of Socioeconomic Factors on Knowledge, Attitudes, and Practices of Dog Owners on Dog Rabies Control in Thailand
Cited by: 6
Author(s): Sith Premashthira, Sarin Suwanpakdee, Weerapong Thanapongtharm, Onpawee Sagarasaeranee, Weerakorn Thichumpa, Chayanin Sararat, Anuwat Wiratsudakul
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2105-13-113

Molecular ecological network analyses
Cited by: 1,612
Author(s): Ye Deng, Yi-Huei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou
Software Mentions: 5
Published: about 14 years ago

10.3389/fonc.2020.566183

Comprehensive Analysis of CDCAs Methylation and Immune Infiltrates in Hepatocellular Carcinoma
Cited by: 8
Author(s): Yongkang Wang, Yinfeng Yang, Honglei Gao, Ting Ouyang, Luyao Zhang, Jili Hu, Hu Sheng, Hongxing Kan
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.01119

Identification of RNA: 5-Methylcytosine Methyltransferases-Related Signature for Predicting Prognosis in Glioma
Cited by: 23
Author(s): Peng Wang, Minxian Wu, Zewei Tu, Chuming Tao, Qing Hu, Kuangxun Li, Xingen Zhu, Kai Huang
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2020.00081

A 6 lncRNA-Based Risk Score System for Predicting the Recurrence of Colon Adenocarcinoma Patients
Cited by: 18
Author(s): Haojie Yang, Hong-Cheng Lin, Lun Hua, Dan Gan, Wei Jin, Can Cui, Yixin Yan, Yiming Qian, Changpeng Han, Zhenyi Wang
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-016-3135-y

A comparative study of ChIP-seq sequencing library preparation methods
Cited by: 21
Author(s): Arvind Sundaram, Timothy R. Hughes, Shea Biondi, Nathalie Bolduc, Sarah K. Bowman, Andrew Camilli, Yap Ching Chew, Catherine Couture, Andrew Farmer, John P. Jerome, David W. Lazinski, Andrew McUsic, Peng Xu, Kamran Shazand, Feng Xu, Robert Lyle, Gregor D. Gilfillan
Software Mentions: 5
Published: over 9 years ago

10.1002/bimj.201800222

Multiple imputation for discrete data: Evaluation of the joint latent normal model
Cited by: 17
Author(s): Matteo Quartagno, James Carpenter
Software Mentions: 5
Published: over 7 years ago

10.1007/s10126-021-10033-8

Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
Cited by: 5
Author(s): Magnus Alm Rosenblad, Anna Abramova, Ulrika Lind, Pall I. Olason, Stefania Giacomello, Björn Nystedt, Anders Blomberg
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pntd.0005693

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas
Cited by: 53
Author(s): Naomi L. Forrester, Joel O. Wertheim, Vivian G. Dugan, Albert J. Auguste, David L. Lin, Alexandra Adams, Rubing Chen, Rodion Gorchakov, Grace Leal, José G. Estrada-Franco, Jyotsna Pandya, Rebecca Halpin, Kumar Hari, Ravi Jain, Timothy B. Stockwell, Suman Das, David E. Wentworth, Martin D. Smith, Sergei L. Kosakovsky Pond, Scott C. Weaver
Software Mentions: 5
Published: almost 9 years ago

10.7717/peerj.3657

<tt>phydms</tt>: software for phylogenetic analyses informed by deep mutational scanning
Cited by: 21
Author(s): Sarah K Hilton, Michael B. Doud, Jesse D Bloom
Software Mentions: 5
Published: almost 9 years ago

10.1111/cpr.12968

Systemic transcriptome comparison between early‐ And late‐onset pre‐eclampsia shows distinct pathology and novel biomarkers
Cited by: 15
Author(s): Fang Guo, Zhenan Bao, Hao Yang, Yixi Fu, Yaning Wang, Jianming Huang, Min Cheng, Xiaobo Li, Zhuo Shen, Li Li, Ping He, Andy Peng Xiang, Shuaiyu Wang, Hongbo Zhang
Software Mentions: 5
Published: over 5 years ago

10.1186/s13045-020-01005-x

RNA sequencing: new technologies and applications in cancer research
Cited by: 187
Author(s): Mingye Hong, Shuangping Tao, Ling Zhang, Li-Ting Diao, Xuanmei Huang, Shaohui Huang, Shu‐Juan Xie, Zhilong Xiao, Hua Zhang
Software Mentions: 5
Published: over 5 years ago

10.1167/iovs.18-24101

Ascorbate Suppresses VEGF Expression in Retinal Pigment Epithelial Cells
Cited by: 20
Author(s): David W. Sant, Vladimir Camarena, Sushmita Mustafi, Yiwen Li, Zachary Wilkes, Derek Van Booven, Rong Wen, Gaofeng Wang
Software Mentions: 5
Published: almost 8 years ago

10.1186/1471-2105-9-390

R/parallel – speeding up bioinformatics analysis with R
Cited by: 27
Author(s): Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
Software Mentions: 5
Published: almost 18 years ago

10.7717/peerj.11012

Changes in diversity and community assembly of jumping spiders (Araneae: Salticidae) after rainforest conversion to rubber and oil palm plantations
Cited by: 13
Author(s): André Junggebauer, Tamara R. Hartke, Daniel Ramos, Ina Schaefer, Damayanti Buchori, Purnama Hidayat, Stefan Scheu, Jochen Drescher
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-57968-x

Prognostic Nomogram For Locoregionally Advanced Nasopharyngeal Carcinoma
Cited by: 15
Author(s): Yanming Jiang, Song Qu, Xin-Bin Pan, Shan Huang, Xiaodong Zhu
Software Mentions: 5
Published: over 6 years ago

10.1038/srep43465

Parasitism perturbs the mucosal microbiome of Atlantic Salmon
Cited by: 86
Author(s): Martin S. Llewellyn, S. Leadbeater, Carlos García, François‐Étienne Sylvain, María Custodio, Keng Pee Ang, Frank C. Powell, Gary R. Carvalho, Simon Creer, J. M. Elliot, Nicolas Derôme
Software Mentions: 5
Published: over 9 years ago

10.1093/jmcb/mjaa061

RNF219 interacts with CCR4–NOT in regulating stem cell differentiation
Cited by: 6
Author(s): Hao Du, Chen Chen, Yan Wang, Yang Yang, Zhuanzhuan Che, Xiaoxu Liu, Siyan Meng, Chenghao Guo, Manman Xu, Haitong Fang, Fengchao Wang, Chengqi Lin, Zhuojuan Luo
Software Mentions: 5
Published: over 5 years ago

10.3892/or.2015.4023

Integrated analysis of DNA methylation and microRNA regulation of the lung adenocarcinoma transcriptome
Cited by: 20
Author(s): Jie Du, Lin Zhang
Software Mentions: 5
Published: about 11 years ago