10.1371/journal.pone.0115065

Network Meta-Analysis Using R: A Review of Currently Available Automated Packages
Cited by: 232
Author(s): Binod Neupane, Danielle Richer, Alice D. Bonner, Taddele Kibret, Joseph Beyene
Software Mentions: 5
Published: over 11 years ago

10.1038/s41598-021-82145-z

Social media reveal ecoregional variation in how weather influences visitor behavior in U.S. National Park Service units
Cited by: 18
Author(s): Emily J. Wilkins, Peter D. Howe, Jordan W. Smith
Software Mentions: 5
Published: over 5 years ago

10.1098/rsos.160728

Shaping communicative colour signals over evolutionary time
Cited by: 19
Author(s): Alison G. Ossip‐Drahos, José R. Oyola Morales, Cuauhcihuatl Vital‐García, J. Jaime Zúñiga‐Vega, Diana K. Hews, Emı́lia P. Martins
Software Mentions: 5
Published: over 9 years ago

10.3390/ani9110970

Enzymatically Digested Food Waste Altered Fecal Microbiota But Not Meat Quality and Carcass Characteristics of Growing-Finishing Pigs
Cited by: 2
Author(s): Cynthia Jinno, Perot Saelao, Elizabeth A. Maga, Arthur S. King, Dan Morash, Steven M. Zicari, Xiang Yang, Yanhong Liu
Software Mentions: 5
Published: over 6 years ago

10.3389/fimmu.2019.01629

Sonic Hedgehog Is a Determinant of γδ T-Cell Differentiation in the Thymus
Cited by: 12
Author(s): Konstantinos Mengrelis, Ching‐In Lau, Jasmine Rowell, Anisha Solanki, S. Norris, Scott R. Ross, M. Ono, Susan V. Outram, Tessa Crompton
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2016.02012

16S Based Microbiome Analysis from Healthy Subjects’ Skin Swabs Stored for Different Storage Periods Reveal Phylum to Genus Level Changes
Cited by: 45
Author(s): Ingeborg Klymiuk, Isabella Bambach, V. Patra, Slave Trajanoski, Peter Wolf
Software Mentions: 5
Published: over 9 years ago

10.1186/s42523-020-00058-0

Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides
Cited by: 1
Author(s): Bianca R. P. Brown, Joaquin C. B. Nunez, David M. Rand
Software Mentions: 5
Published: over 5 years ago

10.1073/pnas.2110758118

TET2 as a tumor suppressor and therapeutic target in T-cell acute lymphoblastic leukemia
Cited by: 22
Author(s): Maike Bensberg, Olof Rundquist, Aida Selimović, Cathrine Lagerwall, Mikael Benson, Mika Gustafsson, Hartmut Vogt, Antonio Lentini, Colm E. Nestor
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.stem.2020.09.001

Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder
Cited by: 86
Author(s): Hannah K. Long, Marco Osterwalder, Ian Welsh, Karissa Hansen, James O. J. Davies, Yiran E. Liu, Mervenaz Koska, Alexander T. Adams, Robert Aho, Neiha Arora, Kazuya Ikeda, Ruth M. Williams, Tatjana Sauka‐Spengler, Matthew H. Porteus, Tim Mohun, Diane E. Dickel, Tomek Swigut, Jim R. Hughes, Douglas R. Higgs, Axel Visel, Licia Selleri, Joanna Wysocka
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0222165

Advancing computational biology and bioinformatics research through open innovation competitions
Cited by: 5
Author(s): Andrea Blasco, Michael G. Endres, Rinat A. Sergeev, Anup Jonchhe, N. J. Maximilian Macaluso, Rajiv Narayan, Ted Natoli, Jin Hyun Paik, Bryan Briney, Chunlei Wu, Andrew I. Su, Aravind Subramanian, Karim R. Lakhani
Software Mentions: 5
Published: almost 7 years ago

10.1080/19490976.2020.1752605

Metagenomics reveals impact of geography and acute diarrheal disease on the Central Indian human gut microbiome
Cited by: 20
Author(s): Tanya Monaghan, Tim J. Sloan, Stephen R. Stockdale, Adam Blanchard, Richard D. Emes, Mark H. Wilcox, Rima Biswas, Rupam Nashine, Sonali Manke, Jinal Gandhi, Pratishtha Jain, Shrejal Bhotmange, Shrikant Ambalkar, Ashish Satav, Lorraine A. Draper, Colin Hill, Rajpal S. Kashyap
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0146469

Large-Scale Spatio-Temporal Patterns of Mediterranean Cephalopod Diversity
Cited by: 11
Author(s): Stefanie Keller, Valerio Bartolino, Manuel Hidalgo, Isabella Bitetto, Loredana Casciaro, Danila Cuccu, Antonio Esteban, Carlos Martín García, Germana Garofalo, Marios Josephides, Angélique Jadaud, Eugenia Lefkaditou, Porzia Maiorano, Chiara Manfredi, Bojan Marčeta, Enric Massutí, Reno Micallef, Panagiota Peristeraki, Giulio Rélini, Paolo Sartor, María Teresa Spedicato, George Tserpes, Antoni Quetglas
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj.10463

Diversity of microbes colonizing forages of varying lignocellulose properties in the sheep rumen
Cited by: 13
Author(s): Mohammad Farhad Vahidi, Javad Gharechahi, Mehrdad Behmanesh, Xuezhi Ding, Jianlin Han, Ghasem Hosseini Salekdeh
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-80221-4

The use of individual, social, and animated cue information by capuchin monkeys and children in a touchscreen task
Cited by: 6
Author(s): Elizabeth Renner, Donna Kean, Mark Atkinson, Christine A. Caldwell
Software Mentions: 5
Published: over 5 years ago

10.1038/srep43446

Characterization of gene expression profiles in HBV-related liver fibrosis patients and identification of ITGBL1 as a key regulator of fibrogenesis
Cited by: 61
Author(s): Mingjie Wang, Qiming Gong, Jiming Zhang, Liang Chen, Zhanqing Zhang, Lungen Lu, Demin Yu, Yue Han, Donghua Zhang, Peizhan Chen, Xiaonan Zhang, Zhenghong Yuan, Huang Jy, Xinxin Zhang
Software Mentions: 5
Published: over 9 years ago

10.1172/jci.insight.148694

Natural mucosal barriers and COVID-19 in children
Cited by: 113
Author(s): Carl A. Pierce, Sharlene Sy, Benjamin T. Galen, D. Yitzchak Goldstein, Erika P. Orner, Marla J. Keller, Kevan C. Herold, Betsy C. Herold
Software Mentions: 5
Published: about 5 years ago

10.3390/metabo8040078

Population-Level Analysis to Determine Parameters That Drive Variation in the Plasma Metabolite Profiles
Cited by: 2
Author(s): Mahmoud Al-Majdoub, Katharina Herzog, Bledar Daka, Martin Magnusson, Lennart Råstam, Ulf Lindblad, Peter Sartipy
Software Mentions: 5
Published: over 7 years ago

10.1007/s13353-020-00569-1

Differential expression of lung adenocarcinoma transcriptome with signature of tobacco exposure
Cited by: 11
Author(s): Raneem Y Hammouz, Joanna Kostanek, Aleksandra Dudzisz, Piotr J Witas, Magdalena Orzechowska, Andrzej K. Bednarek
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pgen.1006231

Linking Core Promoter Classes to Circadian Transcription
Cited by: 7
Author(s): Pål O. Westermark
Software Mentions: 5
Published: almost 10 years ago

10.3389/fgene.2019.01386

Alveolar Macrophage Chromatin Is Modified to Orchestrate Host Response to Mycobacterium bovis Infection
Cited by: 17
Author(s): Thomas J. Hall, Douglas Vernimmen, John Andrew Browne, Michael P. Mullen, Stephen V. Gordon, David E. MacHugh, Alan M. O’Doherty
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.11433

Analysis of multi-omics differences in left-side and right-side colon cancer
Cited by: 7
Author(s): Yanyi Huang, Jinzhong Duanmu, Yushu Liu, Mengyun Yan, Taiyuan Li, Qunguang Jiang
Software Mentions: 5
Published: about 5 years ago

10.3389/fpls.2021.636652

Non-target Site Herbicide Resistance Is Conferred by Two Distinct Mechanisms in Black-Grass (Alopecurus myosuroides)
Cited by: 25
Author(s): S. Franco Ortega, Alina Goldberg-Cavalleri, Andrew Walker, Melissa Brazier‐Hicks, Nawaporn Onkokesung, Robert Edwards
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-21988-5

Continental-scale animal tracking reveals functional movement classes across marine taxa
Cited by: 39
Author(s): Stephanie Brodie, Elodie J. I. Lédée, Michelle R. Heupel, Russell C. Babcock, Hamish A. Campbell, Daniel C. Gledhill, Xavier Hoenner, Charlie Huveneers, Fabrice R. A. Jaine, Colin A. Simpfendorfer, Matthew D. Taylor, Vinay Udyawer, Robert Harcourt
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2019.01491

Genomic Characterization of Jumbo Salmonella Phages That Effectively Target United Kingdom Pig-Associated Salmonella Serotypes
Cited by: 26
Author(s): Anisha M. Thanki, Nathan Brown, Andrew Millard, Martha R. J. Clokie
Software Mentions: 5
Published: about 7 years ago

10.3389/fgene.2019.00371

High-Order Correlation Integration for Single-Cell or Bulk RNA-seq Data Analysis
Cited by: 9
Author(s): Hui Tang, Tao Zeng, Luonan Chen
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-021-92826-4

Validating quantitative PCR assays for cfDNA detection without DNA extraction in exercising SLE patients
Cited by: 12
Author(s): Elmo Neuberger, Alexandra Brahmer, Tobias Ehlert, Katrin Kluge, Keito F A Philippi, Simone Boedecker, Julia Weinmann‐Menke, Perikles Simon
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pgen.1008261

Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes
Cited by: 26
Author(s): Eliška Táborská, Josef Pasulka, Radek Malı́k, Filip Horvat, Irena Jenickova, Zoe Jelić Matošević, Petr Svoboda
Software Mentions: 5
Published: over 6 years ago

10.18632/aging.102373

Bioinformatic profiling of prognosis-related genes in the breast cancer immune microenvironment
Cited by: 29
Author(s): Fang Bai, Yu-Chun Jin, Peng Zhang, Hongliang Chen, Yi‐Peng Fu, Mingdi Zhang, Zhen Weng, Kangning Wu
Software Mentions: 5
Published: over 6 years ago

10.1007/s10456-021-09788-4

The endosomal RIN2/Rab5C machinery prevents VEGFR2 degradation to control gene expression and tip cell identity during angiogenesis
Cited by: 20
Author(s): Lanette Kempers, Yuki Wakayama, Ivo van der Bijl, Charita Furumaya, Iris M. De Cuyper, Aldo Jongejan, Marije Kat, Anne-Marieke D. van Stalborch, Antonius L. van Boxtel, Marvin Hubert, Dirk Geerts, Jaap D. van Buul, Dirk de Korte, Wiebke Herzog, Coert Margadant
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-021-02497-7

SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAs
Cited by: 7
Author(s): Alon Rabin, Michela Zaffagni, Reut Ashwal-Fluss, Inés Lucía Patop, Aarti Jajoo, Shlomo Shenzis, Liran Carmel, Sebastián Kadener
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.53839

Cancer systems immunology
Cited by: 12
Author(s): Nathan E. Reticker-Flynn, Edgar G. Engleman
Software Mentions: 5
Published: about 6 years ago

10.1186/s13059-021-02376-1

A systematic dissection of the epigenomic heterogeneity of lung adenocarcinoma reveals two different subclasses with distinct prognosis and core regulatory networks
Cited by: 15
Author(s): Chongze Yuan, Haojie Chen, Shiqi Tu, Hsin Yi Huang, Yunjian Pan, Xiuqi Gui, Muyu Kuang, Xuxia Shen, Qiang Zheng, Yang Zhang, Chao Cheng, Hui Hong, Xiaoting Tao, Yizhou Peng, Xingxin Yao, Fei-Long Meng, Hongbin Ji, Zongshu Shao, Yihua Sun
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-014-0579-8

Pancancer analysis of DNA methylation-driven genes using MethylMix
Cited by: 102
Author(s): Olivier Gevaert, Robert Tibshirani, Sylvia K. Plevritis
Software Mentions: 5
Published: over 11 years ago

10.3389/fmicb.2020.00052

sraX: A Novel Comprehensive Resistome Analysis Tool
Cited by: 14
Author(s): Leonardo G. Panunzi
Software Mentions: 5
Published: over 6 years ago

10.1002/1878-0261.12070

Synergistic activity of everolimus and 5-aza-2′-deoxycytidine in medullary thyroid carcinoma cell lines
Cited by: 23
Author(s): Giovanna Mantovani, Alessandra Dicitore, Daniele Pepe, Davide Gentilini, Elisa Grassi, Maria Orietta Borghi, Giulia Gelmini, Maria Celeste Cantone, Germano Gaudenzi, Gabriella Misso, Anna Maria Di Blasio, Leo J. Hofland, Michele Caraglia, Luca Persani
Software Mentions: 5
Published: about 9 years ago

10.1186/s12859-016-1440-8

TTCA: an R package for the identification of differentially expressed genes in time course microarray data
Cited by: 15
Author(s): Marco Albrecht, Damian Stichel, Bettina Müller, Ruth Merkle, Carsten Sticht, Norbert Gretz, Ursula Klingmüller, Kai Breuhahn, Franziska Matthäus
Software Mentions: 5
Published: over 9 years ago

10.3389/fgene.2021.697043

A Ferroptosis-Related Gene Model Predicts Prognosis and Immune Microenvironment for Cutaneous Melanoma
Cited by: 12
Author(s): Congcong Xu, Hao Chen
Software Mentions: 5
Published: almost 5 years ago

10.3389/fimmu.2021.669920

Myeloid ATP Citrate Lyase Regulates Macrophage Inflammatory Responses In Vitro Without Altering Inflammatory Disease Outcomes
Cited by: 6
Author(s): Sanne G.S. Verberk, Hendrik J. P. van der Zande, Jeroen Baardman, Kyra E. de Goede, Karl J. Harber, Eelco D. Keuning, Joost M. Lambooij, Frank Otto, Anna Zawistowska-Deniziak, Helga E. de Vries, Menno P.J. de Winther, Bruno Guigas, Jan Van den Bossche
Software Mentions: 5
Published: about 5 years ago

10.18632/oncotarget.20405

Cancer cell line specific co-factors modulate the FOXM1 cistrome
Cited by: 8
Author(s): Yue Wang, Matthew Ung, Tian Xia, Wenqing Cheng, Chao Cheng
Software Mentions: 5
Published: almost 9 years ago

10.18632/oncotarget.13252

Prognostic and predictive values of CDK1 and MAD2L1 in lung adenocarcinoma
Cited by: 81
Author(s): Yuan-Xiang Shi, Tao Zhu, Ting Zou, Wei Zhuo, Yixin Chen, Ma-Sha Huang, Wei Zheng, Chenjing Wang, Xi Li, Xiao‐Yuan Mao, Wei Zhang, Hong‐Hao Zhou, Ji‐Ye Yin, Zhao‐Qian Liu
Software Mentions: 5
Published: over 9 years ago

10.7717/peerj.11721

Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
Cited by: 10
Author(s): Taylor Priest, Luis H. Orellana, Bruno Huettel, Bernhard M. Fuchs, Rudolf Amann
Software Mentions: 5
Published: about 5 years ago

10.3389/fimmu.2021.716661

The Metabolic Landscape of Thymic T Cell Development In Vivo and In Vitro
Cited by: 10
Author(s): Victoria Sun, Mark S. Sharpley, Karolina Elżbieta Kaczor‐Urbanowicz, Peter Chang, Amélie Montel‐Hagen, S. R. Lopez, Alexandre Zampieri, Yuhua Zhu, Stéphanie C. de Barros, Chintan Parekh, David Casero, Utpal Banerjee, Gay M. Crooks
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0208371

Genetic resistance to DEHP-induced transgenerational endocrine disruption
Cited by: 17
Author(s): Ludwig Stenz, Rita Rahban, Julien Prados, Serge Nef, Ariane Paoloni-Giacobino
Software Mentions: 5
Published: about 7 years ago

10.1186/s12864-016-2819-7

An evaluation of processing methods for HumanMethylation450 BeadChip data
Cited by: 52
Author(s): Jie Liu, Kimberly D. Siegmund
Software Mentions: 5
Published: about 10 years ago

10.1186/s10020-020-00253-4

Genomic imbalances in the placenta are associated with poor fetal growth
Cited by: 13
Author(s): Giulia Gobbo, Yue Yin, Sanaa Choufani, Emma Butcher, John Wei, Evica Rajcan‐Separovic, Hayley Bos, Peter von Dadelszen, Rosanna Weksberg, Wendy P. Robinson, Ryan K. C. Yuen
Software Mentions: 5
Published: over 5 years ago

10.3390/brainsci11040474

German Language Adaptation of the NAVS (NAVS-G) and of the NAT (NAT-G): Testing Grammar in Aphasia
Cited by: 3
Author(s): Ruth Ditges, Elena Barbieri, Cynthia K. Thompson, Sandra Weıntraub, Cornelius Weiller, Marek Marsel Mesulam, Dorothee Kümmerer, Nils Schröter, Mariacristina Musso
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.6660

Music-performance regulates microRNAs in professional musicians
Cited by: 7
Author(s): Preethy Sasidharan Nair, Tuire Kuusi, Minna Ahvenainen, Anju K. Philips, Irma Järvelä
Software Mentions: 5
Published: over 7 years ago

10.1186/s42523-021-00084-6

Probiotics mediated gut microbiota diversity shifts are associated with reduction in histopathology and shedding of Lawsonia intracellularis
Cited by: 5
Author(s): Adrian Muwonge, Anbu K. Karuppannan, Tanja Opriessnig
Software Mentions: 5
Published: over 5 years ago

10.3389/fnins.2021.650219

A Dissociation of Attention, Executive Function and Reaction to Difficulty: Development of the MindPulse Test, a Novel Digital Neuropsychological Test for Precise Quantification of Perceptual-Motor Decision-Making Processes
Cited by: 2
Author(s): Sandra Suárez, Bertrand Eynard, Sylvie Granon
Software Mentions: 5
Published: almost 5 years ago

10.3389/fimmu.2018.02059

A Distinct Esophageal mRNA Pattern Identifies Eosinophilic Esophagitis Patients With Food Impactions
Cited by: 8
Author(s): Benjamin F. Sallis, Utkucan Acar, Kelsey Hawthorne, Stephen Babcock, Cynthia Kanagaratham, Jeffrey D. Goldsmith, Rachel Rosen, Jon A. Vanderhoof, Samuel Nurko, Edda Fiebiger
Software Mentions: 5
Published: over 7 years ago

10.7554/eLife.66018

Information flow, cell types and stereotypy in a full olfactory connectome
Cited by: 82
Author(s): Philipp Schlegel, Alexander Shakeel Bates, Tomke Stürner, Sridhar R. Jagannathan, Nikolas Drummond, Joseph Hsu, Laia Serratosa Capdevila, Alexandre Javier, Elizabeth C. Marin, Asa Barth-Maron, Imaan F M Tamimi, Feng Li, Gerald M. Rubin, Stephen M. Plaza, Marta Costa, Gregory Jefferis
Software Mentions: 5
Published: about 5 years ago

10.3390/jcm10040892

Spinal Cord Morphology in Degenerative Cervical Myelopathy Patients; Assessing Key Morphological Characteristics Using Machine Vision Tools
Cited by: 9
Author(s): Kalum Ost, W. Bradley Jacobs, Nathan Evaniew, Julien Cohen‐Adad, David W. Anderson, David W. Cadotte
Software Mentions: 5
Published: over 5 years ago

10.1186/s13014-017-0863-3

Intensity-modulated versus 3-dimensional conformal radiotherapy in the definitive treatment of esophageal cancer: comparison of outcomes and acute toxicity
Cited by: 24
Author(s): Matthias F. Haefner, Kristin Lang, Vivek Verma, Stefan A. Koerber, Lorenz Uhlmann, Jürgen Debus, Florian Sterzing
Software Mentions: 5
Published: almost 9 years ago

10.1007/s00404-020-05949-w

A risk factor analysis of complications after surgery for vulvar cancer
Cited by: 8
Author(s): Georgios Gitas, Louisa Proppe, Sascha Baum, M. Kruggel, Achim Rody, Dimitrios Tsolakidis, D Zouzoulas, Antonio Simone Laganà, V. Guenther, Damaris Freytag, İbrahim Alkatout
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008988

Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactions
Cited by: 10
Author(s): Nikolina Šoštarić, Vera van Noort
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0212849

DeephESC 2.0: Deep Generative Multi Adversarial Networks for improving the classification of hESC
Cited by: 11
Author(s): Rajkumar Theagarajan, Bir Bhanu
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2018.02680

Germination and Growth Analysis of Streptomyces lividans at the Single-Cell Level Under Varying Medium Compositions
Cited by: 5
Author(s): Joachim Koepff, Christian Carsten Sachs, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh, Marco Oldiges, Alexander Grünberger
Software Mentions: 5
Published: over 7 years ago

10.7554/eLife.63856

Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila
Cited by: 60
Author(s): Colleen N. McLaughlin, Maria Brbić, Qijing Xie, Tongchao Li, Felix Horns, Sai Saroja Kolluru, Justus M. Kebschull, David Vacek, Anthony Xie, Jiefu Li, Robert C. Jones, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.531476

Application of MRI Radiomics-Based Machine Learning Model to Improve Contralateral BI-RADS 4 Lesion Assessment
Cited by: 11
Author(s): Hao Wen, Jing Gong, Shengping Wang, Hui Zhu, Bin Zhao, Weijun Peng
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-77364-9

A potential energy and mutual information based link prediction approach for bipartite networks
Cited by: 7
Author(s): Purushottam Kumar, Dolly Sharma
Software Mentions: 5
Published: over 5 years ago

10.3390/vaccines8040691

Characterizing News Report of the Substandard Vaccine Case of Changchun Changsheng in China: A Text Mining Approach
Cited by: 1
Author(s): Ping Zhou, Yisha He, Chao Lyu, Xiaoguang Yang
Software Mentions: 5
Published: over 5 years ago

10.1128/mBio.03109-19

A Multiplex Fluidic Chip for Rapid Phenotypic Antibiotic Susceptibility Testing
Cited by: 16
Author(s): Pikkei Wistrand-Yuen, Christer Malmberg, Nikos Fatsis-Kavalopoulos, Moritz Lübke, Thomas Tängdén, Johan Kreuger
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1009316

A probabilistic model for the ultradian timing of REM sleep in mice
Cited by: 6
Author(s): Sung-Ho Park, Justin Baik, June Seok Hong, Hanna Antila, Benjamin Kurland, Shinjae Chung, Franz Weber
Software Mentions: 5
Published: almost 5 years ago

10.3390/s21093145

An Evaluation of Motion Trackers with Virtual Reality Sensor Technology in Comparison to a Marker-Based Motion Capture System Based on Joint Angles for Ergonomic Risk Assessment
Cited by: 4
Author(s): Jan P. Vox, Anika Weber, Karen Insa Wolf, Krzysztof Izdebski, Thomas Schüler, Peter König, Frank Wallhoff, Daniel Friemert
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-019-39468-9

Flexible updating of dynamic knowledge structures
Cited by: 17
Author(s): Franziska R. Richter, Paul M. Bays, Priyanga Jeyarathnarajah, Jon S. Simons
Software Mentions: 5
Published: over 7 years ago

10.3389/fnbot.2020.568359

Nengo and Low-Power AI Hardware for Robust, Embedded Neurorobotics
Cited by: 46
Author(s): Travis DeWolf, Pawel Jaworski, Chris Eliasmith
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-019-38791-5

Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis
Cited by: 25
Author(s): Jerneja Rudolf, Daniel Dondorp, Louise Canon, Sonia Tieo, Marios Chatzigeorgiou
Software Mentions: 5
Published: over 7 years ago

10.1186/s12938-021-00871-x

A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer
Cited by: 6
Author(s): Yankai Zhang, Yichao Yan, Ning Ning, Zhanlong Shen, Yingjiang Ye
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.5882

imGLAD: accurate detection and quantification of target organisms in metagenomes
Cited by: 20
Author(s): Juan Castro, Luis M. Rodriguez-R, William T. Harvey, Michael R. Weigand, Janet K. Hatt, Michelle Qiu Carter, Konstantinos T. Konstantinidis
Software Mentions: 5
Published: over 7 years ago

10.3389/fgene.2019.01387

Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development
Cited by: 7
Author(s): Cameron P. Gallivan, Honglei Ren, Elizabeth L. Read
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.58660

Global alignment and assessment of TRP channel transmembrane domain structures to explore functional mechanisms
Cited by: 37
Author(s): Katherine E. Huffer, Antoniya A. Aleksandrova, Andrés Jara-Oseguera, Lucy R. Forrest, Kenton J. Swartz
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-018-38198-8

Spectrum of Microbial Sequences and a Bacterial Cell Wall Antigen in Primary Demyelination Brain Specimens Obtained from Living Patients
Cited by: 12
Author(s): John D. Kriesel, Preetida J. Bhetariya, Zhengming Wang, David Renner, Cheryl A. Palmer, Kael F. Fischer
Software Mentions: 5
Published: over 7 years ago

10.1002/brb3.1974

Self‐administered biofeedback treatment app for pediatric migraine: A randomized pilot study
Cited by: 3
Author(s): Anker Stubberud, Mattias Linde, Eiliv Brenner, Martin Heier, Alexander Olsen, Anne Hege Aamodt, Gøril Bruvik Gravdahl, Erling Tronvik
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-69494-x

Immune network dysregulation precedes clinical diagnosis of asthma
Cited by: 3
Author(s): Yi-Shin Chang, Benjamin A. Turturice, Cody Schott, Patricia W. Finn, David L. Perkins
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0135350

Conservation Status of North American Birds in the Face of Future Climate Change
Cited by: 90
Author(s): Gary Langham, Justin G. Schuetz, Trisha Distler, Candan U. Soykan, Chad B. Wilsey
Software Mentions: 5
Published: almost 11 years ago

10.3389/fimmu.2019.01863

Molecular Characterization of Human Lymph Node Stromal Cells During the Earliest Phases of Rheumatoid Arthritis
Cited by: 13
Author(s): Emmanuel Karouzakis, J Hähnlein, Cristoforo Grasso, Johanna F. Semmelink, Paul P. Tak, Daniëlle M. Gerlag, Caroline Ospelt, Lisa G. M. van Baarsen
Software Mentions: 5
Published: almost 7 years ago

10.3390/ijms17060956

Human Milk Cells Contain Numerous miRNAs that May Change with Milk Removal and Regulate Multiple Physiological Processes
Cited by: 58
Author(s): Mohammed Alsaweed, Ching Tat Lai, Peter Hartmann, Donna T. Geddes, Foteini Kakulas
Software Mentions: 5
Published: about 10 years ago

10.1038/s41421-017-0003-0

ATF6 safeguards organelle homeostasis and cellular aging in human mesenchymal stem cells
Cited by: 46
Author(s): Si Wang, Boqiang Hu, Zicheng Ding, Yujiao Dang, Jun Wu, Di Li, Xiaoling Liu, Bailong Xiao, Weiqi Zhang, Rui Ren, Jinghui Lei, Huifang Hu, Chang Chen, Piu Chan, Dong Liu, Jing Qu, Fuchou Tang, Guang Hui Liu
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-017-14650-z

Cross platform analysis of transcriptomic data identifies ageing has distinct and opposite effects on tendon in males and females
Cited by: 18
Author(s): Louise Pease, Peter Clegg, Carole J. Proctor, Daryl P. Shanley, Simon Cockell, Mandy J. Peffers
Software Mentions: 5
Published: over 8 years ago

10.3389/fonc.2020.00909

Preoperative CT Radiomics Predicting the SSIGN Risk Groups in Patients With Clear Cell Renal Cell Carcinoma: Development and Multicenter Validation
Cited by: 3
Author(s): Yi Jiang, Wuchao Li, Chencui Huang, Chong Tian, Qi Chen, Xian‐Chun Zeng, Yin Cao, Yi Chen, Yintong Yang, Heng Liu, Yonghua Bo, Chenggong Luo, Yiming Li, Tijiang Zhang, Rongping Wang
Software Mentions: 5
Published: almost 6 years ago

10.1172/jci.insight.149257

Cervicovaginal microbiota and metabolome predict preterm birth risk in an ethnically diverse cohort
Cited by: 27
Author(s): Flavia Flaviani, Natasha L. Hezelgrave, Tokuwa Kanno, Erica M. Prosdocimi, Evonne Chin-Smith, Alexandra Ridout, Djuna K von Maydell, Vikash Mistry, William Wade, Andrew Shennan, Konstantina Dimitrakopoulou, Paul Seed, A. James Mason, Rachel Tribe
Software Mentions: 5
Published: almost 5 years ago

10.3390/ijerph18073370

The Academic Landscapes of Manufacturing Enterprise Performance and Environmental Sustainability: A Study of Commonalities and Differences
Cited by: 7
Author(s): Cristian Mejía, Yuya Kajikawa
Software Mentions: 5
Published: over 5 years ago

10.1016/j.cmet.2021.01.004

Polycystic ovary syndrome is transmitted via a transgenerational epigenetic process
Cited by: 100
Author(s): Nour El Houda Mimouni, Isabel Paiva, Anne‐Laure Barbotin, Fatima Ezzahra Timzoura, Damien Plassard, Stéphanie Le Gras, Gaëtan Ternier, Pascal Pigny, Sophie Catteau-Jonard, Virginie Simon, Vincent Prévot, Anne‐Laurence Boutillier, Paolo Giacobini
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giaa049

Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy
Cited by: 11
Author(s): Katarzyna Murat, Björn Grüning, Paulina Wiktoria Poterlowicz, Gillian Westgate, Desmond J. Tobin, Krzysztof Poterlowicz
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0218764

Using nutritional geometry to define the fundamental macronutrient niche of the widespread invasive ant Monomorium pharaonis
Cited by: 12
Author(s): Birla A. Krabbe, Xavier Arnán, Pol Lannes, Christoffer Echtvad Bergstedt, Rasmus Stenbak Larsen, Jes S. Pedersen, Jonathan Z. Shik
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pbio.1000335

The Sexually Antagonistic Genes of Drosophila melanogaster
Cited by: 294
Author(s): Paolo Innocenti, Edward H. Morrow
Software Mentions: 5
Published: over 16 years ago

10.3389/fonc.2020.586019

Three Immune-Associated Subtypes of Diffuse Glioma Differ in Immune Infiltration, Immune Checkpoint Molecules, and Prognosis
Cited by: 19
Author(s): Quanwei Zhou, Xuejun Yan, Weidong Liu, Yin Wu, Hongjuan Xu, Damei Cheng, Xingjun Jiang, Chao Ren
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0223675

Establishing an infrastructure for collaboration in primate cognition research
Cited by: 76
Author(s): Many Primates, Drew Altschul, Michael J. Beran, Manuel Bohn, Josep Call, Sarah E. DeTroy, Shona Duguid, Crystal L. Egelkamp, Claudia Fichtel, Julia Fischer, Molly Flessert, Daniel Hanuš, Daniel B. M. Haun, Lou M. Haux, R. Adriana Hernández‐Aguilar, Eva Herrmann, Lydia M. Hopper, Marine Joly, Fumihiro Kano, Stefanie Keupp, Alicia P. Melis, Alba Motes-Rodrigo, Stephen R. Ross, Alejandro Sánchez-Amaro, Yutaro Sato, Vanessa Schmitt, Manon K. Schweinfurth, Amanda M. Seed, Derry Taylor, Christoph J. Völter, Elizabeth Warren, Sarah F. Brosnan
Software Mentions: 5
Published: over 6 years ago

10.1093/gigascience/giaa066

CandiMeth: Powerful yet simple visualization and quantification of DNA methylation at candidate genes
Cited by: 5
Author(s): Sara-Jayne Thursby, Darin K Lobo, Kristina Pentieva, Shudong Zhang, Rachelle E Irwin, Colum P. Walsh
Software Mentions: 5
Published: about 6 years ago

10.1038/s41423-020-00574-8

Single-cell profiling reveals the trajectories of natural killer cell differentiation in bone marrow and a stress signature induced by acute myeloid leukemia
Cited by: 48
Author(s): Adeline Crinier, Pierre‐Yves Dumas, Éric Bertrand, Christelle Pipéroglou, Laurine Gil, Arnaud Villacreces, Frédéric Vély, Zoran Ivanović, Pierre Milpied, Émilie Narni-Mancinelli, Éric Vivier
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.00769

Dysregulated m6A-Related Regulators Are Associated With Tumor Metastasis and Poor Prognosis in Osteosarcoma
Cited by: 54
Author(s): Jianhao Li, Benchen Rao, Jie Yang, Liwen Liu, Mengling Huang, Xin Liu, Guangying Cui, Chao Li, Qicai Han, Hao Yang, Xichun Cui, Ranran Sun
Software Mentions: 5
Published: about 6 years ago

10.1007/s11356-019-06245-0

The effect of railways on bird diversity in farmland
Cited by: 9
Author(s): Joanna Kajzer‐Bonk, Piotr Skórka, Maciej Bonk, Magdalena Lenda, Elżbieta Rożej-Pabijan, Marta Wantuch, Dawid Moroń
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12859-017-1909-0

DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data
Cited by: 52
Author(s): John Gaspar, Ronald P. Hart
Software Mentions: 5
Published: over 8 years ago

10.15252/msb.20209885

Genome‐wide off‐rates reveal how DNA binding dynamics shape transcription factor function
Cited by: 12
Author(s): Wim J. de Jonge, Mariël Brok, Philip Lijnzaad, Patrick Kemmeren, Frank C. P. Holstege
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.6880

Structural implications of traditional agricultural landscapes on the functional diversity of birds near the Korean Demilitarized Zone
Cited by: 8
Author(s): Jae Hyun Kim, Shinyeong Park, Seung Ho Kim, Kyungsik Kang, Bruce Waldman, Myung Hwa Lee, Minhye Yu, Hyunyoung Yang, Hyun Yong Chung, Eun Ju Lee
Software Mentions: 5
Published: almost 6 years ago

10.1126/sciadv.abe2592

Aquaculture mediates global transmission of a viral pathogen to wild salmon
Cited by: 24
Author(s): Gideon Mordecai, Kristina M. Miller, Arthur L. Bass, Andrew Bateman, Amy K. Teffer, Jessica M. Caleta, Emiliano Di Cicco, Angela D. Schulze, Karia H. Kaukinen, Shaorong Li, Amy Tabata, Bradley R. Jones, Tobi J. Ming, Jeffrey B. Joy
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-90744-z

Directional changes in Levallois core technologies between Eastern Africa, Arabia, and the Levant during MIS 5
Cited by: 3
Author(s): James Blinkhorn, Huw S. Groucutt, Eleanor M. L. Scerri, Michael D. Petraglia, Simon Blockley
Software Mentions: 5
Published: about 5 years ago

10.3389/fimmu.2020.550769

HDAC3 Mediates the Inflammatory Response and LPS Tolerance in Human Monocytes and Macrophages
Cited by: 26
Author(s): Mohammed Ghiboub, Jing Zhao, Andrew Y. Li Yim, Ronald Schilderink, Caroline Verseijden, Patricia H. P. van Hamersveld, José Duarte, Theodorus B. M. Hakvoort, Iris Admiraal, Nicola Harker, David F. Tough, Peter Henneman, Menno P.J. de Winther, Wouter J. de Jonge
Software Mentions: 5
Published: almost 6 years ago

10.1002/ctm2.246

Circulating tumor cell characterization of lung cancer brain metastases in the cerebrospinal fluid through single‐cell transcriptome analysis
Cited by: 33
Author(s): Haoyu Ruan, Yihang Zhou, Jie Shen, Yue Zhai, Ying Xu, Linyu Pi, Run Huang, Kun Chen, Xiangyu Li, Wendong Ma, Zhiyuan Wu, Xuan Deng, Xiaozhu Wang, Chao Zhang, Ming Guan
Software Mentions: 5
Published: over 5 years ago

10.1038/s42003-020-01398-y

Genomic retargeting of p53 and CTCF is associated with transcriptional changes during oncogenic HRas-induced transformation
Cited by: 2
Author(s): Michal Schwartz, Avital Sarusi Portugez, Bracha Zukerman Attia, Miriam Tannenbaum, Leslie E. Cohen, Olga Loza, Emily Chase, Yousef Turman, Tommy Kaplan, Zaidoun Salah, Ofir Hakim
Software Mentions: 5
Published: over 5 years ago