10.1186/s13059-020-02247-1

Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequences
Cited by: 22
Author(s): Caroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0222527

Bacterial diversity in Icelandic cold spring sources and in relation to the groundwater amphipod Crangonyx islandicus
Cited by: 7
Author(s): Ragnhildur Guðmundsdóttir, Agnes-Katharina Kreiling, Bjarni K. Kristjánsson, V. Marteinsson, Snæbjörn Pálsson
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-020-69525-7

Evolutionary trends of the conserved neurocranium shape in angel sharks (Squatiniformes, Elasmobranchii)
Cited by: 4
Author(s): Faviel A. López‐Romero, Sebastian Stumpf, Cathrin Pfaff, Giuseppe Marramà, Zerina Johanson, Jürgen Kriwet
Software Mentions: 5
Published: almost 6 years ago

10.1098/rsos.201758

Spatial cognitive ability is associated with transitory movement speed but not straightness during the early stages of exploration
Cited by: 8
Author(s): Christine E. Beardsworth, Mark A. Whiteside, Lucy A. Capstick, Philippa R. Laker, Ellis J. G. Langley, Ran Nathan, Yotam Orchan, Sivan Toledo, Jayden O. van Horik, Joah R. Madden
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.12357

Population genomics of the Anthropocene: urbanization is negatively associated with genome‐wide variation in white‐footed mouse populations
Cited by: 97
Author(s): Jason Munshi‐South, Christine P. Zolnik, S. E. Harris
Software Mentions: 5
Published: over 10 years ago

10.3390/ani10122451

The Native Ant Lasius niger Can Limit the Access to Resources of the Invasive Argentine Ant
Cited by: 6
Author(s): Marion Cordonnier, Olivier Blight, Elena Angulo, Franck Courchamp
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0140761

Relation between Water Balance and Climatic Variables Associated with the Geographical Distribution of Anurans
Cited by: 25
Author(s): Braz Titon, Fernando Ribeiro Gomes
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pntd.0004549

Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients
Cited by: 52
Author(s): Andrés Colubri, Thomas Silver, Terrence Fradet, Kalliroi Retzepi, Benjamin N. Fry, Pardis C. Sabeti
Software Mentions: 5
Published: over 10 years ago

10.3390/ijerph18031333

Handling Complex Missing Data Using Random Forest Approach for an Air Quality Monitoring Dataset: A Case Study of Kuwait Environmental Data (2012 to 2018)
Cited by: 28
Author(s): Ahmad Alsaber, Jiazhu Pan, Adeeba Al‐Hurban
Software Mentions: 5
Published: over 5 years ago

10.14202/vetworld.2020.1714-1718

Genetic and non-genetic factors affecting semen production and quality characteristics of Gir cattle breed under semi-arid climate
Cited by: 3
Author(s): Kaustubh Bhave, K. Thilak Pon Jawahar, P. Kumarasamy, Thillaiampalam Sivakumar, Cecilia Joseph, Tejashree Shirsath, P. S. Deshmukh, R. Venkataramanan
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-019-5806-y

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species
Cited by: 44
Author(s): Belinda Wright, Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg, Catherine E. Grueber
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-43747-w

Social hierarchy position in female mice is associated with plasma corticosterone levels and hypothalamic gene expression
Cited by: 54
Author(s): Cait M. Williamson, Won Lee, Alexandra R DeCasien, Alesi Lanham, Russell D. Romeo, James P. Curley
Software Mentions: 5
Published: about 7 years ago

10.3390/proteomes8030015

Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform
Cited by: 9
Author(s): Subina Mehta, Caleb Easterly, Ray Sajulga, Robert Millikin, Andrea Argentini, Ignacio Eguinoa, Lennart Martens, Michael R. Shortreed, Lloyd M. Smith, Thomas McGowan, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik Jagtap
Software Mentions: 5
Published: about 6 years ago

10.1099/mgen.0.000050

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward
Cited by: 44
Author(s): Mark B. Schultz, Duy Pham Thanh, Nhu Tran Do Hoan, Ryan R. Wick, Danielle J. Ingle, Jane Hawkey, D.J. Edwards, Johanna J. Kenyon, Nguyen Phu Huong Lan, James I. Campbell, Guy Thwaites, Nguyen Thi Khanh Nhu, Ruth M. Hall, Alexandre Fournier‐Level, Stephen Baker, Kathryn E. Holt
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj.1258

Humans differ in their personal microbial cloud
Cited by: 196
Author(s): James F. Meadow, Adam E. Altrichter, Ashley Bateman, Jason Stenson, Glen Brown, Jessica L. Green, Brendan J. M. Bohannan
Software Mentions: 5
Published: almost 11 years ago

10.1371/journal.pone.0080968

A New Freshwater Biodiversity Indicator Based on Fish Community Assemblages
Cited by: 11
Author(s): Joanne Clavel, Nicolas Poulet, Emmanuelle Porcher, Simon Blanchet, Gaël Grenouillet, Sandrine Pavoine, Anne Biton, Nirmala Seon-Massin, Christine Argillier, Martín Daufresne, Pauline Teillac-Deschamps, Romain Julliard
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pgen.1009389

Gene disruption by structural mutations drives selection in US rice breeding over the last century
Cited by: 6
Author(s): Justin N. Vaughn, Walid Korani, Joshua C. Stein, Jeremy D. Edwards, Daniel G. Peterson, Sheron Simpson, Ramey C Youngblood, Jane Grimwood, Kapeel Chougule, Doreen Ware, Anna M. McClung, Brian E. Scheffler
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0164532

The Evolutionary Basis of Naturally Diverse Rice Leaves Anatomy
Cited by: 23
Author(s): Jolly Chatterjee, Jacqueline Dionora, Abigail Elmido-Mabilangan, Samart Wanchana, Vivek Thakur, Anindya Bandyopadhyay, D. S. Brar, W. Paul Quick
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0204391

Aseptic loosening after total hip arthroplasty and the risk of cardiovascular disease: A nested case-control study
Cited by: 0
Author(s): Agata Rysinska, Olof Sköldenberg, Anne Garland, Ola Rolfson, Sara Aspberg, Thomas Eisler, Göran Garellick, Andreas M. Stark, Nils P Hailer, Max Gordon
Software Mentions: 5
Published: over 7 years ago

10.1186/s12866-020-01884-7

Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: about 6 years ago

10.2196/24348

Monitoring Information-Seeking Patterns and Obesity Prevalence in Africa With Internet Search Data: Observational Study
Cited by: 6
Author(s): Olubusola Oladeji, Chi Zhang, Tiam Moradi, Dharmesh Tarapore, Andrew Stokes, Vukosi Marivate, Moinina David Sengeh, Elaine O. Nsoesie
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pbio.1002585

Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process
Cited by: 192
Author(s): Richard Angélique, Boullu Loïs, Ulysse Herbach, Bonnafoux Arnaud, Valérie Morin, Elodie Vallin, Anissa Guillemin, Nan Gao, Gunawan Rudiyanto, Jérémie Cosette, Ophélie Arnaud, Jean-Jacques Kupiec, Thibault Espinasse, Sandrine Gonin-Giraud, Olivier Gandrillon
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pcbi.1005642

Learning infectious disease epidemiology in a modern framework
Cited by: 3
Author(s): Andreas Handel
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.7208

No evidence for negative impacts of acute sulfoxaflor exposure on bee olfactory conditioning or working memory
Cited by: 38
Author(s): Harry Siviter, A. Don Scott, Grégoire Pasquier, Christopher D. Pull, Mark J. F. Brown, Ellouise Leadbeater
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0088805

Molecular Phylogenetics and Temporal Diversification in the Genus Aeromonas Based on the Sequences of Five Housekeeping Genes
Cited by: 13
Author(s): J. Gaspar Lorén, Maribel Farfán, M. Carmen Fusté
Software Mentions: 5
Published: over 12 years ago

10.1038/s41598-021-81740-4

Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage
Cited by: 3
Author(s): Ching-Tai Chen, Jen-Hung Wang, Cheng-Wei Cheng, Wei-Che Hsu, Chu-Ling Ko, Wai-Kok Choong, Ting‐Yi Sung
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-020-00995-7

Characterization of the human skin resistome and identification of two microbiota cutotypes
Cited by: 30
Author(s): Zhiming Li, Jingjing Xia, Liuyiqi Jiang, Yimei Tan, Yitai An, Xiaodong Zhu, Jie Ruan, Zhihua Chen, Hefu Zhen, Yanyun Ma, Zhuye Jie, Liang Xiao, Huanming Yang, Jian Wang, Karsten Kristiansen, Xun Xu, Li Jin, Chao Nie, Jean Krutmann, Xiao Liu, Jiucun Wang
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.7085

Evidence of postbreeding prospecting in a long‐distance migrant
Cited by: 7
Author(s): Max Ciaglo, Ross Calhoun, Scott W. Yanco, Michael B. Wunder, Craig A. Stricker, Brian D. Linkhart
Software Mentions: 5
Published: over 5 years ago

10.1002/jssc.202000011

Recent applications of chemometrics in one‐ and two‐dimensional chromatography
Cited by: 37
Author(s): Tijmen S. Bos, Wouter C. Knol, Stef R.A. Molenaar, Leon E. Niezen, Peter J. Schoenmakers, Govert W. Somsen, Bob W.J. Pirok
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-019-6314-9

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause
Cited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-020-07300-8

Rapid single cell evaluation of human disease and disorder targets using REVEAL: SingleCell™
Cited by: 2
Author(s): Namit Kumar, Ryan Golhar, Kriti Sen Sharma, James L. Holloway, Srikant Sarangi, Isaac M. Neuhaus, Alice M. Walsh, Zachary W. Pitluk
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1007520

A novel network control model for identifying personalized driver genes in cancer
Cited by: 39
Author(s): Weifeng Guo, Shao-Wu Zhang, Tao Zeng, Yan Li, Jianxi Gao, Luonan Chen
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-45569-2

Eurasian lynx fitness shows little variation across Scandinavian human-dominated landscapes
Cited by: 15
Author(s): José Vicente López‐Bao, Malin Aronsson, John D. C. Linnell, John Oddén, Jens Persson, Henrik Andrén
Software Mentions: 5
Published: about 7 years ago

10.1093/molbev/msw124

Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution
Cited by: 107
Author(s): Michaela Kendall, Caroline Colijn
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0228539

Intraspecific perspective of phenotypic coordination of functional traits in Scots pine
Cited by: 13
Author(s): Bárbara Carvalho, Cristina C. Bastías, Adrián Escudero, Fernando Valladares, Raquel Benavides
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms19113421

Composition and Genetic Diversity of the Nicotiana tabacum Microbiome in Different Topographic Areas and Growth Periods
Cited by: 14
Author(s): Xiaolong Yuan, Min Cao, Xinmin Liu, Yongmei Du, Guoming Shen, Zhongfeng Zhang, Jinhai Li, Peng Zhang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0192165

Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
Cited by: 10
Author(s): João Paulo Gomes Viana, Marcos Vinícius Bohrer Monteiro Siqueira, Fabiano Lucas Araujo, Carolina Grando, Patrícia Sanae Sujii, Ellida de Aguiar Silvestre, Mariana Novello, José Baldin Pinheiro, Marcelo Mattos Cavallari, Pedro Henrique Santin Brancalion, Ricardo Ribeiro Rodrigues, Anete Pereira de Souza, Julian M. Catchen, Maria Imaculada Zucchi
Software Mentions: 5
Published: over 8 years ago

10.1002/ece3.4006

Low acclimation capacity of narrow‐ranging thermal specialists exposes susceptibility to global climate change
Cited by: 40
Author(s): Tricia M. Markle, Kenneth H. Kozak
Software Mentions: 5
Published: about 8 years ago

10.1002/ece3.6103

Metacommunity Structure of Stream Insects across Three Hierarchical Spatial scales
Cited by: 12
Author(s): Siwen He, Janne Soininen, Guiping Deng, Beixin Wang
Software Mentions: 5
Published: over 6 years ago

10.18632/oncotarget.25350

High expression of nucleoporin 133 mRNA in bone marrow CD138+ cells is a poor prognostic factor in multiple myeloma
Cited by: 4
Author(s): Soushi Ibata, Masayoshi Kobune, Shohei Kikuchi, Masahiro Yoshida, Satoshi Miura, Hyogo Horiguchi, Kazuyuki Murase, Satoshi Iyama, Kohichi Takada, Koji Miyanishi, Junji Kato
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-019-45950-1

The Interplay between Incipient Species and Social Polymorphism in the Desert Ant Cataglyphis
Cited by: 9
Author(s): Tali Reiner Brodetzki, Shani Inbar, Pnina Cohen, Serge Aron, Eyal Privman, Abraham Hefetz
Software Mentions: 5
Published: about 7 years ago

10.1093/bioinformatics/btx139

Estimating gene regulatory networks with pandaR
Cited by: 15
Author(s): Daniel Schlauch, Joseph N. Paulson, A. E. Young, Kimberly Glass, John Quackenbush
Software Mentions: 5
Published: over 9 years ago

10.3390/v12091027

Novel Circoviruses Detected in Feces of Sonoran Felids
Cited by: 8
Author(s): Natalie Payne, Simona Kraberger, Rafaela S. Fontenele, Kara Schmidlin, Melissa Bergeman, Ivonne Cassaigne, Melanie Culver, Arvind Varsani, Koenraad Van Doorslaer
Software Mentions: 5
Published: almost 6 years ago

10.18632/oncotarget.17462

Epigenome-wide association study in hepatocellular carcinoma: Identification of stochastic epigenetic mutations through an innovative statistical approach
Cited by: 43
Author(s): Davide Gentilini, Stefania Scala, Germano Gaudenzi, Paolo Garagnani, Miriam Capri, Matteo Cescon, Gian Luca Grazi, Maria Giulia Bacalini, Serena Pisoni, Alessandra Dicitore, Luisa Circelli, Sara Santagata, Francesco Izzo, Anna Maria Di Blasio, Luca Persani, Claudio Franceschi, Giovanna Mantovani
Software Mentions: 5
Published: about 9 years ago

10.7150/ijbs.37399

Gut microbiome associated with APC gene mutation in patients with intestinal adenomatous polyps
Cited by: 38
Author(s): Sai Liang, Yan Mao, Ming Liao, Yali Xu, Ying‐Chun Chen, Xiaoliang Huang, Chuangyi Wei, Changtao Wu, Qiuyan Wang, Xiaoyan Pan, Weizhong Tang
Software Mentions: 5
Published: over 6 years ago

10.1186/s40462-021-00249-7

Migration ecology of western gray catbirds
Cited by: 7
Author(s): Kristen A. Mancuso, Megan A. Fylling, Christine A. Bishop, Karen E. Hodges, Michael B. Lancaster, Katharine Stone
Software Mentions: 5
Published: over 5 years ago

10.3390/cancers13051097

Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer
Cited by: 10
Author(s): Martina K. Zowada, Stephan M. Tirier, Sebastian M. Dieter, Teresa G Krieger, Ava Oberlack, Robert Lorenz Chua, Mario Huerta, Foo Wei Ten, Karin Laaber, Jeongbin Park, Katharina Jechow, Torsten Müller, Mathias Kalxdorf, Mark Kriegsmann, Katharina Kriegsmann, Friederike Herbst, Jeroen Krijgsveld, Martin Schneider, Roland Eils, Hanno Glimm, Christian Conrad, Claudia R. Ball
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0188430

Diversification rates, host plant shifts and an updated molecular phylogeny of Andean Eois moths (Lepidoptera: Geometridae)
Cited by: 14
Author(s): Patrick Strutzenberger, Gunnar Brehm, Brigitte Gottsberger, Florian Bodner, Carlo L. Seifert, Konrad Fiedler
Software Mentions: 5
Published: over 8 years ago

10.3389/fchem.2018.00257

Fusion of MALDI Spectrometric Imaging and Raman Spectroscopic Data for the Analysis of Biological Samples
Cited by: 29
Author(s): Oleg Ryabchykov, Juergen Popp, Thomas Bocklitz
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0104787

Relationship between Phylogeny and Immunity Suggests Older Caribbean Coral Lineages Are More Resistant to Disease
Cited by: 36
Author(s): H C Jorge Pinzón, Joshuah Beach-Letendre, Ernesto Weil, Laura D. Mydlarz
Software Mentions: 5
Published: almost 12 years ago

10.1038/s41598-021-81504-0

Leadership and tempo perturbation affect coordination in medium-sized groups
Cited by: 3
Author(s): Bahar Tunçgenç, Eoin Travers, Merle T. Fairhurst
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.12699

Weed evolution: Genetic differentiation among wild, weedy, and crop radish
Cited by: 16
Author(s): Amanda Charbonneau, David C. Tack, Allison Lale, J. E. Goldston, Mackenzie Caple, Emma Conner, Oz Barazani, Jotham Ziffer-Berger, Ian Dworkin, Jeffrey K. Conner
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0098536

The Evolution of Morphospace in Phytophagous Scarab Chafers: No Competition - No Divergence?
Cited by: 21
Author(s): Jonas Eberle, Renier Myburgh, Dirk Ahrens
Software Mentions: 5
Published: about 12 years ago

10.1111/eva.12905

Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
Cited by: 21
Author(s): Takeshi Takeuchi, Tetsuji Masaoka, Hideo Aoki, Ryo Koyanagi, Manabu Fujie, Noriyuki Satoh
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0243609

MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
Cited by: 6
Author(s): Yi An Chen, Jonguk Park, Yayoi Natsume-Kitatani, Hitoshi Kawashima, Attayeb Mohsen, Koji Hosomi, Kumpei Tanisawa, Harumi Ohno, Kana Konishi, Haruka Murakami, Motohiko Miyachi, Jun Kunisawa, Kenji Mizuguchi
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2017.00214

Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes
Cited by: 73
Author(s): Shrikant Bhute, Mangesh V. Suryavanshi, Santosh B. Joshi, Chittaranjan S. Yajnik, Yogesh S. Shouche, Surendra Ghaskadbi
Software Mentions: 5
Published: over 9 years ago

10.1016/j.bbapap.2013.02.032

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective
Cited by: 67
Author(s): Yasset Perez‐Riverol, Rui Wang, Henning Hermjakob, Markus Müller, Vladimir Vesada, Juan Antonio Vizcaíno
Software Mentions: 5
Published: over 12 years ago

10.1093/conphys/coy038

Juvenile rockfish show resilience to CO2-acidification and hypoxia across multiple biological scales
Cited by: 13
Author(s): Brian A. Davis, Lisa M. Komoroske, Matthew J. Hansen, Jamilynn B. Poletto, Emily N Perry, Nathan A. Miller, Sean M. Ehlman, Sarah G. Wheeler, Andrew Sih, Anne E. Todgham, Nann A. Fangue
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0230221

Driving factors of conifer regeneration dynamics in eastern Canadian boreal old-growth forests
Cited by: 22
Author(s): Maxence Martin, Miguel Montoro Girona, Hubert Morin
Software Mentions: 5
Published: almost 6 years ago

10.1038/srep40170

Simultaneous abrupt shifts in hydrology and fish assemblage structure in a floodplain lake in the central Amazon
Cited by: 66
Author(s): Cristhiana Paula Röpke, Sidinéia Amadio, Jansen Zuanon, Efrem Jorge Gondim Ferreira, Cláudia Pereira de Deus, Tiago Pires, Kirk O. Winemiller
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-018-19717-z

Annual shifts of flow regime alteration: new insights from the Chaishitan Reservoir in China
Cited by: 12
Author(s): Yongyong Zhang, Xiaoyan Zhai, Tongtiegang Zhao
Software Mentions: 5
Published: over 8 years ago

10.1093/conphys/coaa119

Seasonal variation of health in Asian elephants
Cited by: 2
Author(s): Diogo Santos, Vérane Berger, Robin Cristofari, Win Htut, U Kyaw Nyein, Htoo Htoo Aung, Sophie Reichert, Virpi Lummaa
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.562775

Response of Soil Fungal Community to Drought-Resistant Ea-DREB2B Transgenic Sugarcane
Cited by: 7
Author(s): Xue Zhao, Qi Liu, Sasa Xie, Yuke Jiang, Hao Yang, Ziting Wang, Muqing Zhang
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0227169

Effects of land-use change and related pressures on alien and native subsets of island communities
Cited by: 11
Author(s): Katia Sánchez-Ortiz, Kara Taylor, Adriana De Palma, Franz Essl, Wayne Dawson, Holger Kreft, Jan Pergl, Petr Pyšek, Mark van Kleunen, Patrick Weigelt, Andy Purvis
Software Mentions: 5
Published: over 5 years ago

10.1128/AEM.00149-21

Hyperlocal Variation in Soil Iron and the Rhizosphere Bacterial Community Determines Dollar Spot Development in Amenity Turfgrass
Cited by: 1
Author(s): Ming-Yi Chou, Smita Shrestha, Renée A. Rioux, Paul L. Koch
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0232242

Prediction of attempted suicide in men and women with crack-cocaine use disorder in Brazil
Cited by: 10
Author(s): Vinícius Serafini Roglio, Eduardo Nunes Borges, Francisco Diego Rabelo‐da‐Ponte, Felipe Ornell, Juliana Nichterwitz Scherer, Jaqueline Bohrer Schuch, Ives Cavalcante Passos, Breno Sanvicente‐Vieira, Rodrigo Grassi‐Oliveira, Lísia von Diemen, Flávio Pechansky, Félix Henrique Paim Kessler
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2021.650026

Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal Cancer
Cited by: 33
Author(s): Jihye Park, Nam-Eun Kim, Hyuk Yoon, Cheol Min Shin, Nayoung Kim, Dong Hoon Lee, Jae Yong Park, Chang Hwan Choi, Jae Gyu Kim, Eui Chong Kim, Tae-Seop Shin, Jinho Yang, Young Soo Park
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.68699

Multi-syndrome, multi-gene risk modeling for individuals with a family history of cancer with the novel R package PanelPRO
Cited by: 9
Author(s): Gavin Lee, Jane W. Liang, Qing Zhang, Theodore Huang, Christine Choirat, Giovanni Parmigani, Danielle Braun
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13063-015-1141-z

Process evaluation of a knowledge translation intervention using facilitation of local stakeholder groups to improve neonatal survival in the Quang Ninh province, Vietnam
Cited by: 25
Author(s): Leif Eriksson, Trần Quang Huy, Dương Minh Đức, Katarina Ekholm Selling, Dinh Phuong Hoa, Nguyễn Thị Thanh Thủy, Nguyen Thu Nga, Lars‐Åke Persson, Lars Wallin
Software Mentions: 5
Published: over 10 years ago

10.1093/gigascience/giz105

rCASC: reproducible classification analysis of single-cell sequencing data
Cited by: 24
Author(s): Luca Alessandrì, Francesca Cordero, Marco Beccuti, Maddalena Arigoni, Martina Olivero, Greta Romano, Sergio Rabellino, Nicola Licheri, Gennaro De Libero, Luigia Pace, Raffaele Calogero
Software Mentions: 5
Published: almost 7 years ago

10.1029/2020EA001343

An Interpolation Method to Reduce the Computational Time in the Stochastic Lagrangian Particle Dispersion Modeling of Spatially Dense XCO₂ Retrievals
Cited by: 6
Author(s): Dustin Roten, Dien Wu, Benjamin Fasoli, T. Oda, John C. Lin
Software Mentions: 5
Published: over 5 years ago

10.1186/s12915-021-01001-8

Evolution of the codling moth pheromone via an ancient gene duplication
Cited by: 9
Author(s): Jean-Marc Lassance, Bao‐Jian Ding, Christer Löfstedt
Software Mentions: 5
Published: about 5 years ago

10.1136/bmj.l1945

Diagnosis of obstructive coronary artery disease using computed tomography angiography in patients with stable chest pain depending on clinical probability and in clinically important subgroups: meta-analysis of individual patient data
Cited by: 85
Author(s): Robert Haase, Peter Schlattmann, Pascal Guéret, Daniele Andreini, Gianluca Pontone, Hatem Alkadhi, Jörg Hausleiter, Mario J. García, Sebastian Leschka, Willem B. Meijboom, Elke Zimmermann, Bernhard Gerber, U. Joseph Schoepf, Abbas Arjmand Shabestari, Bjarne Linde Nørgaard, Matthijs F.L. Meijs, Akira Sato, Kristian Altern Øvrehus, Axel Cosmus Pyndt Diederichsen, Shona M.M. Jenkins, Juhani Knuuti, Ashraf Hamdan, Bjørn Halvorsen, Vladimir Mendoza-Rodríguez, Carlos Eduardo Rochitte, Johannes Rixe, Yung Liang Wan, C. Langer, Nuno Bettencourt, Eugenio Martuscelli, Saïd Ghostine, Ronny R. Buechel, Konstantin Nikolaou, Hans Mickley, Lin Yang, Zhaqoi Zhang, Marcus Y Chen, David A. Halon, Matthias Rief, Kai Sun, Beatrice Hirt-Moch, Hiroyuki Niinuma, Roy Marcus, Simone Muraglia, Réda Jakamy, Benjamin J.W. Chow, Philipp A. Kaufmann, Jean‐Claude Tardif, César Higa Nomura, Klaus F. Kofoed, Jean Pierre Laissy, Armin Arbab‐Zadeh, Kakuya Kitagawa, Roger J. Laham, Masahiro Jinzaki, John Hoe, Frank J. Rybicki, Arthur J. Scholte, Narinder Paul, Swee Yaw Tan, Kunihiro Yoshioka, Robert Röhle, Georg M. Schuetz, Sabine Schueler, Maria H. Coenen, Viktoria Wieske, Stephan Achenbach, Matthew J. Budoff, Michael Laule, David E. Newby, Marc Dewey
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pcbi.1008768

Nonlinear effects of intrinsic dynamics on temporal encoding in a model of avian auditory cortex
Cited by: 1
Author(s): Christof Fehrman, Tyler D. Robbins, C. Daniel Meliza
Software Mentions: 5
Published: over 5 years ago

10.1128/mSystems.00515-20

Physical Activity Shapes the Intestinal Microbiome and Immunity of Healthy Mice but Has No Protective Effects against Colitis in MUC2 ^−/− Mice
Cited by: 12
Author(s): Mehrbod Estaki, Douglas W. Morck, Sanjoy Ghosh, Candice Quin, Jason Pither, Jacqueline A. Barnett, S K Gill
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pbio.1002324

Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton
Cited by: 101
Author(s): D. Yvon, Andrew P. Allen, María Cellamare, Matteo Dossena, Kevin J. Gaston, Maria Leitão, José M. Montoya, Daniel C. Reuman, Guy Woodward, Mark Trimmer
Software Mentions: 5
Published: over 10 years ago

10.1186/gb-2012-13-10-r95

Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers
Cited by: 60
Author(s): Anneleen Decock, Maté Ongenaert, Jasmien Hoebeeck, Katleen De Preter, Gert Van Peer, Wim Van Criekinge, Ruth Ladenstein, Johannes H. Schulte, Rosa Noguera, Raymond Stallings, An Van Damme, Geneviève Laureys, Joëlle Vermeulen, Tom Van Maerken, Frank Speleman, Jo Vandesompele
Software Mentions: 5
Published: over 14 years ago

10.1038/s41598-019-47395-y

Exploitation may influence the climate resilience of fish populations through removing high performance metabolic phenotypes
Cited by: 17
Author(s): Murray I. Duncan, Amanda E. Bates, Nicola C. James, Warren M. Potts
Software Mentions: 5
Published: almost 7 years ago

10.3390/diagnostics11091592

Anti-DFS70 Antibodies for Differentiating Systemic Autoimmune Rheumatic Disease in Patients with Positive ANA Tests: A Systematic Review and Meta-Analysis
Cited by: 9
Author(s): Colin C.J. Cheng, Ming‐Chieh Shih, Ting Lan, Ko-Jen Li
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.64932

Castration delays epigenetic aging and feminizes DNA methylation at androgen-regulated loci
Cited by: 41
Author(s): Victoria J Sugrue, Joseph A. Zoller, Pritika Narayan, Ake T. Lu, Oscar Ortega‐Recalde, Megan Grant, C. Simon Bawden, Skye R. Rudiger, Amin Haghani, Donna M. Bond, Reuben R Hore, Michael Garratt, Karen E. Sears, Nan Wang, Xiangdong Yang, Russell G. Snell, Timothy A Hore, Steve Horvath
Software Mentions: 5
Published: about 5 years ago

10.1186/s12889-021-10433-4

A French multicentric prospective prognostic cohort with epidemiological, clinical, biological and treatment information to improve knowledge on lymphoma patients: study protocol of the “REal world dAta in LYmphoma and survival in adults” (REALYSA) cohort
Cited by: 7
Author(s): Hervé Ghesquières, Cédric Rossi, Fanny Cherblanc, Sandra Le Guyader-Peyrou, Fontanet Bijou, Pierre Sujobert, Pascale Fabbro-Pèray, Adeline Bernier, Alexandre Belot, Loïc Chartier, Luc‐Matthieu Fornecker, Isabelle Baldi, Krimo Bouabdallah, Camille Laurent, Lucie Obéric, Nadine Morineau, Steven Le Gouill, Franck Morschhauser, Corinne Haı̈oun, Gandhi Damaj, Stéphanie Guidez, Gaëlle Labouré, Olivier Fitoussi, Laure Lebras, Rémy Gressin, Gilles Salles, Loïc Ysebaert, Alain Monnereau
Software Mentions: 5
Published: over 5 years ago

10.1111/1462-2920.15114

Heterogeneity of the rice microbial community of the Chinese centuries‐old Honghe Hani rice terraces system
Cited by: 8
Author(s): Pascal Alonso, Laurence Blondin, Pierre Gladieux, Frédéric Mahe, Hervé Sanguin, Romain Ferdinand, Denis Filloux, Érick Desmarais, Frédérique Cerqueira, Baocheng Jin, Huichuan Huang, Xiahong He, Jean-Benoît Morel, Darren P. Martin, Philippe Roumagnac, Christian Vernière
Software Mentions: 5
Published: about 6 years ago

10.7554/eLife.25125

Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression
Cited by: 111
Author(s): Daniel Andergassen, Christoph P. Dotter, D. Wenzel, Verena Sigl, Philipp C. Bammer, Markus Muckenhuber, Daniela Mayer, Tomasz M. Kuliński, Hans-Christian Theussl, Josef Penninger, Christoph Bock, Denise P. Barlow, Florian M. Pauler, Quanah J. Hudson
Software Mentions: 5
Published: almost 9 years ago

10.1093/ve/veaa089

Simulating within host human immunodeficiency virus 1 genome evolution in the persistent reservoir
Cited by: 5
Author(s): Bradley R. Jones, Jeffrey B. Joy
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0252408

The temperature of emotions
Cited by: 16
Author(s): Francisco Barbosa Escobar, Carlos Velasco, Kosuke Motoki, Derek V. Byrne, Qian Janice Wang
Software Mentions: 5
Published: about 5 years ago

10.1038/s41597-020-0574-8

TAASRAD19, a high-resolution weather radar reflectivity dataset for precipitation nowcasting
Cited by: 13
Author(s): Gabriele Franch, Valerio Maggio, Luca Coviello, Marta Pendesini, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-018-24931-w

Exposure to toxic metals triggers unique responses from the rat gut microbiota
Cited by: 85
Author(s): Joshua B. Richardson, Blair C. R. Dancy, Cassandra L. Horton, Young S. Lee, Michael S. Madejczyk, Zhenjiang Zech Xu, Gail Ackermann, Gregory Humphrey, Gustavo Palacios, Rob Knight, John A. Lewis
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2019.00798

Soil Bacterial Function Associated With Stylo (Legume) and Bahiagrass (Grass) Is Affected More Strongly by Soil Chemical Property Than by Bacterial Community Composition
Cited by: 18
Author(s): Zhihui Yang, Yongqiang Qin, Xiaodi Liu, Feng Zhang, Honghui Zhu, Qing Yao
Software Mentions: 5
Published: over 7 years ago

10.1186/1471-2105-11-387

S3DB core: a framework for RDF generation and management in bioinformatics infrastructures
Cited by: 14
Author(s): Jonas S. Almeida, Helena F. Deus, Wolfgang Maaß
Software Mentions: 5
Published: almost 16 years ago

10.1186/s12864-021-07872-z

Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information
Cited by: 5
Author(s): Pattarapol Sumreddee, El Hamidi Hay, Sajjad Toghiani, Andrew Roberts, Samuel E. Aggrey, Romdhane Rekaya
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-019-0758-7

Microbiome of vineyard soils is shaped by geography and management
Cited by: 89
Author(s): E. Coller, Alessandro Cestaro, Roberto Zanzotti, D. Bertoldi, Massimo Pindo, Simone Larger, Davide Albanese, E. Mescalchin, Claudio Donati
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0237118

Modulation of the intestinal microbiota of broilers supplemented with monensin or functional oils in response to challenge by Eimeria spp.
Cited by: 14
Author(s): Alexandre Maciel Vieira, Tatiany Aparecida Teixeira Soratto, Kátia Maria Cardinal, Glauber Wagner, Lucélia Hauptli, André Luís Ferreira Lima, Fabiano Dahlke, Diego Peres Netto, Priscila de Oliveira Moraes, Andréa Machado Leal Ribeiro
Software Mentions: 5
Published: almost 6 years ago

10.7554/eLife.62270

The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline
Cited by: 66
Author(s): Danielle Janosevic, Jered Myslinski, Thomas McCarthy, Amy Zollman, Farooq Syed, Xiaoling Xuei, Hongyu Gao, Yunlong Liu, Kimberly S. Collins, Ying‐Hua Cheng, Seth Winfree, Tarek M. El‐Achkar, Bernhard Maier, Ricardo Melo Ferreira, Michael T. Eadon, Takashi Hato, Pierre C. Dagher
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms8060944

Effect of Washing, Waxing and Low-Temperature Storage on the Postharvest Microbiome of Apple
Cited by: 48
Author(s): Ahmed Abdelfattah, Susan R. Whitehead, Dumitru Macarisin, Jia Liu, Erik Burchard, Shiri Freilich, Christopher Dardick, Samir Droby, Michael Wisniewski
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0083452

Tracking Diet Preferences of Bats Using Stable Isotope and Fatty Acid Signatures of Faeces
Cited by: 35
Author(s): Monika My-Y Lam, Dominik Martin‐Creuzburg, Karl‐Otto Rothhaupt, Kamran Safi, Elizabeth Yohannes, Ioanna Salvarina
Software Mentions: 5
Published: over 12 years ago

10.3758/s13428-019-01203-7

Cross-modal associations and synesthesia: Categorical perception and structure in vowel–color mappings in a large online sample
Cited by: 24
Author(s): Christine Cuskley, Mark Dingemanse, Simon Kirby, Tessa M. van Leeuwen
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pgen.1008367

Integrating transcriptomic network reconstruction and eQTL analyses reveals mechanistic connections between genomic architecture and Brassica rapa development
Cited by: 15
Author(s): Robert L. Baker, Wen Fung Leong, Marcus T. Brock, Matthew J. Rubin, R. J. Cody Markelz, Stephen M. Welch, Julin Maloof, Cynthia Weinig
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12889-020-08805-3

Effectiveness of diet and physical activity interventions among Chinese-origin populations living in high income countries: a systematic review
Cited by: 3
Author(s): Jeannette M. Beasley, Janelle Wagnild, Tessa M. Pollard, Timothy Roberts, Nasima Ahkter
Software Mentions: 5
Published: about 6 years ago

10.7554/eLife.50541

The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons
Cited by: 62
Author(s): Rita A Batista, Jordi Moreno‐Romero, Yue Qiu, Joram van Boven, Juan Santos‐González, Duarte D. Figueiredo, Claudia Köhler
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9081711

Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts
Cited by: 6
Author(s): Marie-Charlotte Cheutin, Sébastien Villéger, Christina C. Hicks, James P. W. Robinson, Nicholas A. J. Graham, Clémence Marconnet, Claudia Ximena Ortiz Restrepo, Yvan Bettarel, Thierry Bouvier, Jean‐Christophe Auguet
Software Mentions: 5
Published: almost 5 years ago