10.3389/fimmu.2021.722206

Gut Bacterial Characteristics of Patients With Type 2 Diabetes Mellitus and the Application Potential
Cited by: 35
Author(s): Yanyan Que, Man Cao, Jianquan He, Qiang Zhang, Qiongyun Chen, Changsheng Yan, Aiqiang Lin, Luxi Yang, Zezhen Wu, Dan Zhu, Fengwu Chen, Zhangran Chen, Chuanxing Xiao, Kaijian Hou, Bangzhou Zhang
Software Mentions: 5
Published: almost 5 years ago

10.3390/cells8040343

The Petunia CHANEL Gene is a ZEITLUPE Ortholog Coordinating Growth and Scent Profiles
Cited by: 18
Author(s): Marta I. Terry, Fernando Pérez-Sánz, María Victoria Díaz-Galián, Felipe Pérez de los Cobos, Pedro J. Navarro, Marcos Egea‐Cortines, Julia Weiß
Software Mentions: 5
Published: over 7 years ago

10.3390/ijerph9072479

Using Bioinformatic Approaches to Identify Pathways Targeted by Human Leukemogens
Cited by: 6
Author(s): Reuben Thomas, Jimmy Phuong, Cliona M. McHale, Luoping Zhang
Software Mentions: 5
Published: almost 14 years ago

10.3389/fgene.2021.620453

STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline
Cited by: 21
Author(s): Núria Planell, Vincenzo Lagani, Patricia Sebastián-León, Frans van der Kloet, Ewoud Ewing, Nestoras Karathanasis, Arantxa Urdangarin, Imanol Arozarena, Maja Jagodic, Ioannis Tsamardinos, Sonia Tarazona, Ana Conesa, Jesper Tegnér, David Green
Software Mentions: 5
Published: over 5 years ago

10.1186/s13073-014-0064-8

The `dnet’ approach promotes emerging research on cancer patient survival
Cited by: 41
Author(s): Hai Fang, Julian Gough
Software Mentions: 5
Published: almost 12 years ago

10.1371/journal.pone.0185376

Cellular heterogeneity contributes to subtype-specific expression of ZEB1 in human glioblastoma
Cited by: 10
Author(s): Philipp Euskirchen, Josefine Radke, Marc Soeren Schmidt, Eva Schulze Heuling, Eric Kadikowski, Meron Maricos, Felix Knab, Ulrike Grittner, Norman Zerbe, Marcus Czabanka, Christoph Dieterich, Hrvoje Miletić, Sverre Mørk, Arend Koch, Matthias Endres, Christoph Harms
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0252157

The disproportion of crowd wisdom: The impact of status seeking on Yelp reviews
Cited by: 7
Author(s): Chao Yu, Drew Margolin
Software Mentions: 5
Published: about 5 years ago

10.3389/frma.2021.644614

PubMed-Scale Chemical Concept Embeddings Reconstruct Physical Protein Interaction Networks
Cited by: 0
Author(s): Blaž Škrlj, Enja Kokalj, Nada Lavrač
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0244439

The peptide symporter SLC15a4 is essential for the development of systemic lupus erythematosus in murine models
Cited by: 14
Author(s): Arna Katewa, Eric Suto, Jessica Hui, Jose Heredia, Jie Liang, Jason A. Hackney, Keith R. Anderson, Tuija Alcantar, Natasha Bacarro, Debra Dunlap, Jeffrey Eastham, Andrés Paler-Martı́nez, Xin Y. Rairdan, Zora Modrušan, Wyne P. Lee, Cary D. Austin, Daniel Lafkas, Nico Ghilardi
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0136830

Methodological Aspects of the Potential Use of Dendrochronological Techniques When Analyzing the Long-Term Impact of Tourism on Protected Areas
Cited by: 4
Author(s): Szymon Ciapała, Paweł Adamski
Software Mentions: 5
Published: almost 11 years ago

10.7150/jca.29958

TGFBI Promotes Tumor Growth and is Associated with Poor Prognosis in Oral Squamous Cell Carcinoma
Cited by: 16
Author(s): Bingjie Wang, Kun-Ping Chi, Ruling Shen, Saiwei Zheng, Yang Guo, Jianfeng Li, Jian Fei, Yuan He
Software Mentions: 5
Published: over 7 years ago

10.3389/fnhum.2019.00119

Neural Correlates of Liberalism and Conservatism in a Post-communist Country
Cited by: 1
Author(s): Jan Kremláček, Daniel Musil, J. Langrová, Martin Paleček
Software Mentions: 5
Published: about 7 years ago

10.1186/s13073-017-0493-2

Predicting cancer type from tumour DNA signatures
Cited by: 36
Author(s): Kee Pang Soh, Ewa Szczurek, Thomas Sakoparnig, Niko Beerenwinkel
Software Mentions: 5
Published: over 8 years ago

10.1007/s00122-020-03759-x

Multi-omics-based prediction of hybrid performance in canola
Cited by: 19
Author(s): Dominic Knoch, Christian R. Werner, Rhonda C. Meyer, David Riewe, Amine Abbadi, Sophie Lücke, Rod J. Snowdon, Thomas Altmann
Software Mentions: 5
Published: over 5 years ago

10.1038/s42003-021-02566-4

Pseudomonas aeruginosa adapts to octenidine via a combination of efflux and membrane remodelling
Cited by: 7
Author(s): Lucy J. Bock, Philip M. Ferguson, Maria Clarke, Vichayanee Pumpitakkul, Matthew E. Wand, Paul-Enguerrand Fady, Leanne Allison, Roland A. Fleck, Matthew J. Shepherd, A. James Mason, J. Mark Sutton
Software Mentions: 5
Published: almost 5 years ago

10.1038/s42003-019-0401-y

High-throughput single-cell whole-genome amplification through centrifugal emulsification and eMDA
Cited by: 33
Author(s): Yusi Fu, Fangli Zhang, Xiannian Zhang, Junlong Yin, Meijie Du, Mi Jiang, Lu Liu, Jie Li, Yanyi Huang, Jianbin Wang
Software Mentions: 5
Published: about 7 years ago

10.3389/fonc.2021.663556

Identification of a Three-RNA Binding Proteins (RBPs) Signature Predicting Prognosis for Breast Cancer
Cited by: 14
Author(s): Yang Liu, Hefen Sun, Xuan Li, Qiqi Liu, Yuanyuan Zhao, Liangdong Li, Baojin Xu, Yifeng Hou, Wei Jin
Software Mentions: 5
Published: almost 5 years ago

10.1007/s00394-016-1230-0

Cocoa polyphenols and fiber modify colonic gene expression in rats
Cited by: 14
Author(s): Malén Massot-Cladera, Àngels Franch, Margarida Castell, Francisco J. Pérez-Cano
Software Mentions: 5
Published: about 10 years ago

10.3389/fcell.2020.588041

Identification of Differential Gene Groups From Single-Cell Transcriptomes Using Network Entropy
Cited by: 3
Author(s): Yanglan Gan, Shanshan Liang, Qingting Wei, Guobing Zou
Software Mentions: 5
Published: over 5 years ago

10.1128/mSystems.00087-17

Tree Leaf Bacterial Community Structure and Diversity Differ along a Gradient of Urban Intensity
Cited by: 43
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2016.00398

Metagenomic Analysis of Bacterial Communities of Antarctic Surface Snow
Cited by: 48
Author(s): Anna Lopatina, Sofia Medvedeva, Sergey Shmakov, Maria D. Logacheva, В. А. Крыленков, Konstantin Severinov
Software Mentions: 5
Published: over 10 years ago

10.3389/fpls.2020.570871

Genomic Selection for Prediction of Fruit-Related Traits in Pepper (Capsicum spp.)
Cited by: 15
Author(s): Ju-Pyo Hong, Na-Young Ro, Hea-Young Lee, Geon Woo Kim, Jae-Hoon Kwon, Eiji Yamamoto, Byoung-Cheorl Kang
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2020.00706

Mitochondrial Genome Polymorphisms in the Human Pathogenic Fungus Cryptococcus neoformans
Cited by: 21
Author(s): Yue Wang, Jianping Xu
Software Mentions: 5
Published: about 6 years ago

10.1186/1751-0473-8-14

GenePattern flow cytometry suite
Cited by: 16
Author(s): Josef Špidlen, Aaron Barsky, Karin Breuer, Peter A. Carr, Marc‐Danie Nazaire, Barbara Hill, Qian Yu, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick‐Pierre Sékaly, Ryan R. Brinkman
Software Mentions: 5
Published: about 13 years ago

10.18632/aging.101341

Central role of the p53 pathway in the noncoding-RNA response to oxidative stress
Cited by: 45
Author(s): Paola Fuschi, Matteo Carrara, Christine Voellenkle, José Manuel García-Manteiga, Paolo Righini, Biagina Maimone, Elena Sangalli, Francesco Villa, Claudia Specchia, Mario Picozza, Giovanni Nano, Carlo Gaetano, Gaia Spinetti, Annibale Alessandro Puca, Alessandra Magenta, Fabio Martelli
Software Mentions: 5
Published: over 8 years ago

10.1186/1471-2105-10-106

flowCore: a Bioconductor package for high throughput flow cytometry
Cited by: 421
Author(s): Florian Hahne, Nolwenn Le Meur, Ryan R. Brinkman, Byron Ellis, Perry D. Haaland, Deepayan Sarkar, Josef Špidlen, Errol Strain, Robert Gentleman
Software Mentions: 5
Published: over 17 years ago

10.1128/mBio.00311-19

Gut Microbiota and Phytoestrogen-Associated Infertility in Southern White Rhinoceros
Cited by: 32
Author(s): Candace L. Williams, Alexis R. Ybarra, Ashley N. Meredith, Barbara S. Durrant, Christopher W. Tubbs
Software Mentions: 5
Published: about 7 years ago

10.1186/s12879-018-3127-4

“Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”
Cited by: 18
Author(s): Sheetal Verma, Peicheng Du, Damalie Nakanjako, Sabine Hermans, Jessica Briggs, Lydia Nakiyingi, Jerrold J. Ellner, Yukari C. Manabe, Padmini Salgame
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-021-90797-0

Targeting of the CD80/86 proinflammatory axis as a therapeutic strategy to prevent severe COVID-19
Cited by: 9
Author(s): Antonio Julià, Irene Bonafonte-Pardàs, Antonio Gómez, María López-Lasanta, Mireia López-Corbeto, Sergio H Martínez-Mateu, Jordi Lladós, Iván Rodríguez-Nunez, R Myers, Sara Marsal
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2020.591667

Effects of RNA Binding Proteins on the Prognosis and Malignant Progression in Prostate Cancer
Cited by: 13
Author(s): Xiaoliang Hua, Shengdong Ge, Juan Chen, Li Zhang, Sheng Tai, Chaozhao Liang
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.706854

Crosslink: An R Package for Network Visualization of Grouped Nodes
Cited by: 1
Author(s): Di Liu, Zhijie Bai, Bing Liu, Zongcheng Li
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2021.695124

Folate Deficiency Triggers the Abnormal Segregation of a Region With Large Cluster of CG-Rich Trinucleotide Repeats on Human Chromosome 2
Cited by: 1
Author(s): Lorenza Garribba, Ivan Vogel, Mads Lerdrup, Marisa M Gonçalves Dinis, Liqun Ren, Ying Liu
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2020.616998

Application of an Autophagy-Related Gene Prognostic Risk Model Based on TCGA Database in Cervical Cancer
Cited by: 16
Author(s): Huadi Shi, Fulan Zhong, Xiaoqiong Yi, Zhenyi Shi, Feiyan Ou, Zhonghua Xu, Yufang Zuo
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2020.602542

Integrated Analysis of lncRNA-Mediated ceRNA Network Reveals a Prognostic Signature for Hepatocellular Carcinoma
Cited by: 7
Author(s): Jian-Rong Sun, Chen-Fan Kong, Kunmin Xiao, Jia-Lu Yang, Xiang-Ke Qu, Jinghui Sun
Software Mentions: 5
Published: over 5 years ago

10.1111/pbi.13236

Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton ( <i>Gossypium hirsutum</i> )
Cited by: 42
Author(s): Syed Shan-e-Ali Zaidi, Rubab Zahra Naqvi, Muhammad Asif, Susan R. Strickler, Sara Shakir, Muhammad Shafiq, Ayesha Khan, Imran Amin, Bharat Mishra, M. Shahid Mukhtar, Brian E. Scheffler, Jodi A. Scheffler, Lukas A. Mueller, Shahid Mansoor
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12915-020-00769-5

Multiple links between 5-methylcytosine content of mRNA and translation
Cited by: 71
Author(s): Ulrike Schümann, He-Na Zhang, Tennille Sibbritt, Anyu Pan, Attila Horváth, Simon Gross, Susan J. Clark, Li Yang, Thomas Preiß
Software Mentions: 5
Published: about 6 years ago

10.3390/nu12092800

Whole Blueberry and Isolated Polyphenol-Rich Fractions Modulate Specific Gut Microbes in an In Vitro Colon Model and in a Pilot Study in Human Consumers
Cited by: 25
Author(s): Alexandra Ntemiri, Tarini Shankar Ghosh, Molly E. Gheller, Tam Tran, Jamie Blum, Paola Pellanda, Klára Vlčková, Marta C Neto, Amy B. Howell, Anna Thalacker‐Mercer, Paul W. O’Toole
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2020.00680

Identification of a Six-Immune-Related Long Non-coding RNA Signature for Predicting Survival and Immune Infiltrating Status in Breast Cancer
Cited by: 24
Author(s): Zheng Li, Yaming Li, Xiaolong Wang
Software Mentions: 5
Published: about 6 years ago

10.1186/s13059-015-0604-6

DGEclust: differential expression analysis of clustered count data
Cited by: 14
Author(s): Dimitrios V Vavoulis, Margherita Francescatto, Peter Heutink, Julian Gough
Software Mentions: 5
Published: over 11 years ago

10.3390/ani11051229

A Preliminary Investigation of Social Network Analysis Applied to Dairy Cow Behavior in Automatic Milking System Environments
Cited by: 2
Author(s): Liliana Fadul-Pacheco, Michael Liou, Douglas J. Reinemann, Víctor E. Cabrera
Software Mentions: 5
Published: about 5 years ago

10.1016/j.csbj.2020.06.010

Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics
Cited by: 33
Author(s): Lian Liu, Bowen Song, Jiani Ma, Yi Song, Song-Yao Zhang, Yujiao Tang, Xiangyu Wu, Zhen Wei, Kunqi Chen, Jionglong Su, Rong Rong, Zhi-Liang Lu, João Pedro de Magalhães, Daniel J. Rigden, Lin Zhang, Shaowu Zhang, Yufei Huang, Xiujuan Lei, Hui Liu, Jia Meng
Software Mentions: 5
Published: over 6 years ago

10.3389/fpsyg.2021.719596

‘I Get High With a Little Help From My Friends’ - How Raves Can Invoke Identity Fusion and Lasting Co-operation via Transformative Experiences
Cited by: 7
Author(s): Martha Newson, Ragini Khurana, Freya Cazorla, Valerie van Mulukom
Software Mentions: 5
Published: almost 5 years ago

10.1007/s13238-020-00720-y

Integrative analysis of in vivo recording with single-cell RNA-seq data reveals molecular properties of light-sensitive neurons in mouse V1
Cited by: 9
Author(s): Jianwei Liu, Mengdi Wang, Le Sun, Na Pan, Changjiang Zhang, Junjing Zhang, Zhentao Zuo, Sheng He, Qian Wu, Xiaoqun Wang
Software Mentions: 5
Published: about 6 years ago

10.1186/s12943-017-0653-4

Human germ/stem cell-specific gene TEX19 influences cancer cell proliferation and cancer prognosis
Cited by: 18
Author(s): Vicente Planells-Palop, Ali Hazazi, Julia Feichtinger, Jana Jezkova, Gerhard G. Thallinger, Naif Alsiwiehri, Mikhlid H. Almutairi, Lee Parry, Jane A. Wakeman, Ramsay J. McFarlane
Software Mentions: 5
Published: about 9 years ago

10.1186/s12864-020-07302-6

JOINT for large-scale single-cell RNA-sequencing analysis via soft-clustering and parallel computing
Cited by: 4
Author(s): Tao Cui, Tingting Wang
Software Mentions: 5
Published: over 5 years ago

10.3389/fpubh.2021.619581

Disease Burden and Attributable Risk Factors of Ovarian Cancer From 1990 to 2017: Findings From the Global Burden of Disease Study 2017
Cited by: 18
Author(s): Zhangjian Zhou, Xuan Wang, Xueting Ren, Linghui Zhou, Nan Wang, Huafeng Kang
Software Mentions: 5
Published: almost 5 years ago

10.3389/fvets.2019.00123

Age-Related Serum Biochemical Reference Intervals Established for Unweaned Calves and Piglets in the Post-weaning Period
Cited by: 42
Author(s): Kuai Yu, Francesca Canalías, David Solà-Oriol, Laura Arroyo, Raquel Pato, Yolanda Saco, M. Terré, Anna Bassols
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0239711

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis
Cited by: 5
Author(s): Morten Seirup, Li‐Fang Chu, Srikumar Sengupta, Ning Leng, Hadley Browder, Kevin Kapadia, Christina M. Shafer, Bret Duffin, Angela L. Elwell, Jennifer M. Bolin, Scott Swanson, Ron Stewart, Christina Kendziorski, James A. Thomson, Rhonda Bacher
Software Mentions: 5
Published: almost 6 years ago

10.1093/bib/bbaa339

FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test
Cited by: 9
Author(s): Yun Zhang, Brian D. Aevermann, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, Ed Lein, Richard H. Scheuermann
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2021.670309

Comparative Immunogenomics of Canine Natural Killer Cells as Immunotherapy Target
Cited by: 7
Author(s): Alicia A. Gingrich, Taylor Reiter, Sean J Judge, Daniel York, Mio Yanagisawa, Aryana Razmara, Ian R. Sturgill, Ugur Nur Basmaci, Rachel Brady, Kevin Stoffel, William J. Murphy, Robert B. Rebhun, C. Titus Brown, Robert J. Canter
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0198452

Large-scale patterns of benthic marine communities in the Brazilian Province
Cited by: 76
Author(s): Anaide W. Aued, Franz Smith, Juan P. Quimbayo, Davi V. Cândido, Guilherme O. Longo, Carlos E. L. Ferreira, Jon D. Witman, Sergio R. Floeter, Bárbara Segal
Software Mentions: 5
Published: about 8 years ago

10.3389/fonc.2021.621430

Identification of Hub Genes Associated With Melanoma Development by Comprehensive Bioinformatics Analysis
Cited by: 8
Author(s): Jie Jiang, Chong Liu, Guoyong Xu, Tuo Liang, Chaojie Yu, Shijie Liao, Zide Zhang, Zhaojun Lu, Zequn Wang, Jiarui Chen, Tianyou Chen, Hao Li, Xinli Zhan
Software Mentions: 5
Published: about 5 years ago

10.3390/ijms21186488

Lipid Stores and Lipid Metabolism Associated Gene Expression in Porcine and Bovine Parthenogenetic Embryos Revealed by Fluorescent Staining and RNA-seq
Cited by: 16
Author(s): Arkadiusz Kajdasz, Ewelina Warzych, Natalia Derebecka, Zofia E. Madeja, D. Lechniak, Joanna Wesoły, Piotr Pawlak
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41437-020-0295-y

Multiscale landscape genetics of American marten at their southern range periphery
Cited by: 10
Author(s): Cody M. Aylward, James D. Murdoch, C. William Kilpatrick
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-59511-4

Does sediment composition sort kinorhynch communities? An ecomorphological approach through geometric morphometrics
Cited by: 3
Author(s): Diego Cepeda, Dolores Trigo, Fernando Pardos, Nuria Sánchez
Software Mentions: 5
Published: over 6 years ago

10.1038/s42003-021-02201-2

Mammary cell gene expression atlas links epithelial cell remodeling events to breast carcinogenesis
Cited by: 28
Author(s): Kohei Saeki, Gregory Chang, Noriko Kanaya, Xiwei Wu, Jinhui Wang, Lauren Bernal, Desiree Ha, Susan L. Neuhausen, Shiuan Chen
Software Mentions: 5
Published: about 5 years ago

10.1186/s13148-018-0588-7

Analysis of repeated leukocyte DNA methylation assessments reveals persistent epigenetic alterations after an incident myocardial infarction
Cited by: 18
Author(s): Cavin Ward‐Caviness, Golareh Agha, Brian H. Chen, Liliane Pfeiffer, Rory Wilson, Peter Wolf, Christian Gieger, Joel Schwartz, Pantel Vokonas, Lifang Hou, Allan C. Just, Stefania Bandinelli, Dena G. Hernandez, Andrew B. Singleton, Holger Prokisch, Thomas Meitinger, Gabi Kastenmüller, Luigi Ferrucci, Andrea A. Baccarelli, Mélanie Waldenberger, Annette Peters
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0119027

Comparative Transcriptome Analysis of Anthurium “Albama” and Its Anthocyanin-Loss Mutant
Cited by: 17
Author(s): Zhiying Li, Jiabin Wang, Xuequan Zhang, Li Xu
Software Mentions: 5
Published: over 11 years ago

10.1073/pnas.2110758118

TET2 as a tumor suppressor and therapeutic target in T-cell acute lymphoblastic leukemia
Cited by: 22
Author(s): Maike Bensberg, Olof Rundquist, Aida Selimović, Cathrine Lagerwall, Mikael Benson, Mika Gustafsson, Hartmut Vogt, Antonio Lentini, Colm E. Nestor
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2021.666771

scGPS: Determining Cell States and Global Fate Potential of Subpopulations
Cited by: 1
Author(s): Michael Thompson, Maika Matsumoto, Tianqi Ma, Anne Senabouth, Nathan J. Palpant, Joseph E. Powell, Quan Nguyen
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0086272

Robust Regression Analysis of Copy Number Variation Data based on a Univariate Score
Cited by: 4
Author(s): Glen A. Satten, Andrew S. Allen, Morna Ikeda, Jennifer G. Mullé, Stephen T. Warren
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0238947

Explaining the travelling behaviour of migrants using Facebook audience estimates
Cited by: 0
Author(s): Spyridon Spyratos, Michele Vespe, Franca Natale, Stefano Maria Iacus, Carlos Santamaría
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2020.607622

Identification and Verification of Immune-Related Gene Prognostic Signature Based on ssGSEA for Osteosarcoma
Cited by: 96
Author(s): Bo Xiao, Liyan Liu, Aoyu Li, Xiang Cheng, Pingxiao Wang, Hui Li, Tao Xiao
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0184471

Genome-wide miRNA response to anacardic acid in breast cancer cells
Cited by: 14
Author(s): David J. Schultz, Penn Muluhngwi, Negin Alizadeh-Rad, Madelyn A. Green, Eric C. Rouchka, Sabine Waigel, Carolyn M. Klinge
Software Mentions: 5
Published: almost 9 years ago

10.3389/fmicb.2021.629449

Diversity of Weissella confusa in Pozol and Its Carbohydrate Metabolism
Cited by: 5
Author(s): Diana Hernández-Oaxaca, Rafael López-Sánchez, Luis Lozano, Carmen Wacher, Lorenzo Segovia, Agustín López Munguía
Software Mentions: 5
Published: over 5 years ago

10.1007/s00253-016-7588-3

Ploidy influences the functional attributes of de novo lager yeast hybrids
Cited by: 65
Author(s): Kristoffer Krogerus, Mikko Arvas, Matteo De Chiara, Frederico Magalhães, Laura Mattinen, Merja Oja, Virve Vidgren, Jia-Xing Yue, Gianni Liti, Brian Gibson
Software Mentions: 5
Published: about 10 years ago

10.1186/s13148-021-01018-4

Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects
Cited by: 44
Author(s): Colette Christiansen, Juan Castillo-Fernandez, Arce Domingo‐Relloso, Wei Zhao, Julia S. El-Sayed Moustafa, Pei-Chien Tsai, Jane Maddock, Karin Haack, Shelley A. Cole, Sharon L.R. Kardia, Mariam Molokhia, Matthew Suderman, Chris Power, Caroline L Relton, Andrew Wong, Diana Kuh, Alissa Goodman, Kerrin S. Small, Jennifer A. Smith, María Téllez-Plaza, Ana Navas-Acién, George B. Ploubidis, Rebecca Hardy, Jordana T. Bell
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0213066

HIV-related posts from a Chinese internet discussion forum: An exploratory study
Cited by: 7
Author(s): Yuan Dong, Xin Zhou, Yi‐Han Lin, Qichao Pan, Ying Wang
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2016.02012

16S Based Microbiome Analysis from Healthy Subjects’ Skin Swabs Stored for Different Storage Periods Reveal Phylum to Genus Level Changes
Cited by: 45
Author(s): Ingeborg Klymiuk, Isabella Bambach, V. Patra, Slave Trajanoski, Peter Wolf
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2019.01665

Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms
Cited by: 97
Author(s): Katharina Kesy, Sonja Oberbeckmann, Bernd Kreikemeyer, Matthias Labrenz
Software Mentions: 5
Published: almost 7 years ago

10.3389/fvets.2020.584436

Efficacy of a Lactobacillus-Based Teat Spray on Udder Health in Lactating Dairy Cows
Cited by: 9
Author(s): J. I. Alawneh, Ameh James, Nancy J. Phillips, Brandon Fraser, K. E. Jury, Martin Soust, T. W. J. Olchowy
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0226179

Analysis of genome-wide DNA arrays reveals the genomic population structure and diversity in autochthonous Greek goat breeds
Cited by: 13
Author(s): Sofia Michailidou, George Th. Tsangaris, Athina Tzora, Ioannis Skoufos, Georgios Banos, Anagnostis Argiriou, G. Arsenos
Software Mentions: 5
Published: over 6 years ago

10.1002/pld3.320

High resolution RNA‐seq profiling of genes encoding ribosomal proteins across different organs and developmental stages in <i>Arabidopsis thaliana</i>
Cited by: 5
Author(s): Wei Xiong, Jiancong Zhang, Ting Lan, Wenwen Kong, Xiaoyan Wang, Lin Liu, Xuemei Chen, Beixin Mo
Software Mentions: 5
Published: about 5 years ago

10.1002/pld3.220

Identification of nodulation‐related genes in <i>Medicago truncatula</i> using genome‐wide association studies and co‐expression networks
Cited by: 4
Author(s): Jean Michel Michno, Junqi Liu, Joseph Jeffers, Robert M. Stupar, Chad L. Myers
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1005187

MinePath: Mining for Phenotype Differential Sub-paths in Molecular Pathways
Cited by: 24
Author(s): Lefteris Koumakis, Alexandros Kanterakis, Evgenia Kartsaki, Maria Chatzimina, Michalis Zervakis, Manolis Tsiknakis, Despoina Vassou, Dimitris Kafetzopoulos, Kostas Marias, Vassilis Moustakis, George Potamias
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2021.569020

Distribution of Hydrogen-Producing Bacteria in Tibetan Hot Springs, China
Cited by: 3
Author(s): Li Ma, Geng Wu, Jian Yang, Liuqin Huang, Dorji Phurbu, Wenjun Li, Hongchen Jiang
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-021-82067-w

Calcium calmodulin kinase II activity is required for cartilage homeostasis in osteoarthritis
Cited by: 11
Author(s): Giovanna Nalesso, Anne‐Sophie Thorup, S. Eldridge, Armando M. De Palma, Amanpreet Kaur, Kiran Peddireddi, Kevin Blighe, Sharmila Rana, B. Stott, Tonia L. Vincent, B.L. Thomas, Jessica Bertrand, J. Sherwood, Antonella Fioravanti, Costantino Pitzalis, Francesco Dell’Accio
Software Mentions: 5
Published: over 5 years ago

10.3390/ani11092606

Jejunal Transcriptomic Profiling for Differences in Feed Conversion Ratio in Slow-Growing Chickens
Cited by: 2
Author(s): Panpradub Sinpru, Cindy Riou, Shin Kubota, Chotima Poompramun, Wittawat Molee, Amonrat Molee
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.8317

Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
Cited by: 65
Author(s): Xiaowei Chen, Haixiang Sun, Fei Jiang, Yan Shen, Xin Li, HU Xue-ju, Xiao-Min Shen, Pingmin Wei
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0165815

The Impact of Tree Diversity on Different Aspects of Insect Herbivory along a Global Temperature Gradient - A Meta-Analysis
Cited by: 40
Author(s): Stephan Kambach, Ingolf Kühn, Bastien Castagneyrol, Helge Bruelheide
Software Mentions: 5
Published: over 9 years ago

10.1111/ele.12794

Less favourable climates constrain demographic strategies in plants
Cited by: 78
Author(s): Anna Mária Csergő, Roberto Salguero‐Gómez, Olivier Broennimann, Shaun R. Coutts, Antoine Guisan, Amy L. Angert, Erik Welk, Iain Stott, Brian J. Enquist, Brian J. McGill, Jens Christian Svenning, Cyrille Violle, Yvonne M. Buckley
Software Mentions: 5
Published: about 9 years ago

10.1186/s13059-020-02210-0

Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
Cited by: 98
Author(s): Shuai He, Lin He Wang, Yang Liu, Yi Qi Li, Hai Tian Chen, Jing Xu, Peng Wan, Guo Wang Lin, Pan Wei, Bo Li, Xiaojun Xia, Dan Wang, Jin Xin Bei, Xiaoshun He, Zhiyong Guo
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.5449

Conversion of rainforest to oil palm and rubber plantations alters energy channels in soil food webs
Cited by: 21
Author(s): Winda Ika Susanti, Melanie M. Pollierer, Rahayu Widyastuti, Stefan Scheu, Anton Potapov
Software Mentions: 5
Published: almost 7 years ago

10.1002/ece3.3697

Offspring of older parents are smaller—but no less bilaterally symmetrical—than offspring of younger parents in the aquatic plant<i>Lemna turionifera</i>
Cited by: 7
Author(s): Eric J. Ankutowicz, Robert A. Laird
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.3817

Benchmarking viromics: an <i>in silico</i> evaluation of metagenome-enabled estimates of viral community composition and diversity
Cited by: 208
Author(s): Simon Roux, Joanne B. Emerson, Emiley A. Eloe‐Fadrosh, Matthew B. Sullivan
Software Mentions: 5
Published: almost 9 years ago

10.1002/ece3.4600

Leaf phenology of thirteen African origins of baobab (<i>Adansonia digitata</i> (L.)) as influenced by daylength and water availability
Cited by: 9
Author(s): Luisa Maddalena Di Lucchio, Rasmus Fensholt, Bo Markussen, Anders Ræbild
Software Mentions: 5
Published: over 7 years ago

10.1016/j.isci.2020.101249

Frequency of MicroRNA Response Elements Identifies Pathologically Relevant Signaling Pathways in Triple-Negative Breast Cancer
Cited by: 5
Author(s): Asha Nair, Xiaojia Tang, Kevin J. Thompson, Peter T. Vedell, Krishna R. Kalari, Subbaya Subramanian
Software Mentions: 5
Published: about 6 years ago

10.1534/g3.119.400898

Interactively AUDIT Your Growth Curves with a Suite of R Packages
Cited by: 4
Author(s): Nicolas Coutin, Guri Giaever, Corey Nislow
Software Mentions: 5
Published: over 6 years ago

10.1534/g3.120.401184

Mapping of Adaptive Traits Enabled by a High-Density Linkage Map for Lake Trout
Cited by: 7
Author(s): Seth Smith, Stephen J. Amish, Louis Bernatchez, Jérémy Le Luyer, Chris Wilson, Olivia Boeberitz, Gordon Luikart, Kim T. Scribner
Software Mentions: 5
Published: about 6 years ago

10.1534/g3.120.401622

Alternative Splicing During the <i>Chlamydomonas</i> <i>reinhardtii</i> Cell Cycle
Cited by: 10
Author(s): Manishi Pandey, Gary D. Stormo, Susan K. Dutcher
Software Mentions: 5
Published: almost 6 years ago

10.3390/curroncol28030210

Transcriptomic Landscape of Lower Grade Glioma Based on Age-Related Non-Silent Somatic Mutations
Cited by: 2
Author(s): Young Joon Park, Jeongman Park, Ju Won Ahn, Jeong Min Sim, Su Jung Kang, Suwan Kim, So Jung Hwang, Songhee Han, Kyu Bo Sung, Jaejoon Lim
Software Mentions: 5
Published: about 5 years ago

10.18632/oncotarget.16493

ERK signalling modulates epigenome to drive epithelial to mesenchymal transition
Cited by: 20
Author(s): Mohit Navandar, Angela Garding, Sanjeeb Kumar Sahu, Abhijeet Pataskar, Sandra Schick, Vijay Tiwari
Software Mentions: 5
Published: over 9 years ago

10.15252/msb.20209698

<scp>CEN</scp> ‐tools: an integrative platform to identify the contexts of essential genes
Cited by: 9
Author(s): Sumana Sharma, Cansu Dinçer, Paula Weidemüller, Gavin J. Wright, Evangelia Petsalaki
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-021-01110-0

Prevotella copri increases fat accumulation in pigs fed with formula diets
Cited by: 70
Author(s): Congying Chen, Shouguo Fang, Hong Wei, Maozhang He, Hao Fu, Xinwei Xiong, Yunyan Zhou, Jingyuan Wu, Jun Gao, Hui Yang, Lusheng Huang
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12870-018-1467-2

WRKY transcription factors in legumes
Cited by: 51
Author(s): Hui Song, Weihong Sun, Guofeng Yang, Juan Sun
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0215497

Gut microbiota features associated with Clostridioides difficile colonization in puppies
Cited by: 15
Author(s): Alexander S. F. Berry, Brendan J Kelly, Denise Barnhart, Douglas G. Kelly, Daniel P. Beiting, Robert N. Baldassano, Laurel E. Redding
Software Mentions: 5
Published: almost 7 years ago

10.3389/fcimb.2021.654074

Intestinal Microbiota Mediates High-Fructose and High-Fat Diets to Induce Chronic Intestinal Inflammation
Cited by: 30
Author(s): Rong Tan, Huiwei Dong, Zhengshan Chen, Min Jin, Jing Yin, Haibei Li, Danyang Shi, Yi-fan Shao, Huaran Wang, Tianjiao Chen, Dong Yang, Jùnwén Lǐ
Software Mentions: 5
Published: about 5 years ago

10.3390/nu7125535

A Survey of Plant Iron Content—A Semi-Systematic Review
Cited by: 21
Author(s): Robert Ancuceanu, Mihaela Dinu, Marilena Viorica Hovaneț, Adriana Iuliana Anghel, Carmen Violeta Popescu, Simona Negreș
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0147798

Carcass Type Affects Local Scavenger Guilds More than Habitat Connectivity
Cited by: 61
Author(s): Zachary H. Olson, James C. Beasley, Olin E. Rhodes
Software Mentions: 5
Published: over 10 years ago

10.3390/ijms22179228

SARS-CoV-2 Impairs Dendritic Cells and Regulates DC-SIGN Gene Expression in Tissues
Cited by: 13
Author(s): Guoshuai Cai, Mulong Du, Yohan Bossé, Helmut Albrecht, Fei Qin, Xizhi Luo, X Michelle Androulakis, Chao Cheng, Mitzi Nagarkatti, Mitzi Nagarkatti, David C. Christiani, Michael L. Whitfield, Christopher I. Amos, Feifei Xiao
Software Mentions: 5
Published: almost 5 years ago