Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00550-20

https://doi.org/10.1128/mSystems.00550-20

A Comprehensive Coexpression Network Analysis in Vibrio cholerae

Cited by: 4
Author(s): Cory D. DuPai, Claus O. Wilke, Bryan William Davies
Published: about 4 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203