10.3390/biom11020291

Determination of Genotoxicity Attributed to Diesel Exhaust Particles in Normal Human Embryonic Lung Cell (WI-38) Line
Cited by: 4
Author(s): Joong Won Lee, Hee Jae Lee, Young Joo Lee, Yong Beom Lim, Woo Jong Sim, Ji Hye Jang, Hye Ryeon Heo, Hyunwoo Lim, Ji Won Jung, Jin Sik Kim
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1008156

Transcriptomic basis and evolution of the ant nurse-larval social interactome
Cited by: 14
Author(s): Michael Warner, Alexander S. Mikheyev, Timothy A. Linksvayer
Software Mentions: 5
Published: about 7 years ago

10.1016/j.celrep.2021.109101

Chromatin accessibility governs the differential response of cancer and T cells to arginine starvation
Cited by: 18
Author(s): Nicholas T. Crump, Andreas V. Hadjinicolaou, Meng Xia, John Walsby-Tickle, Uzi Gileadi, Ji‐Li Chen, Mashiko Setshedi, Lars Rønn Olsen, I-Jun Lau, Laura Godfrey, Lynn Quek, Zhanru Yu, Erica Ballabio, Mike Bogetofte Barnkob, Giorgio Napolitani, Mariolina Salio, Hashem Koohy, Benedikt M. Kessler, Stephen Taylor, Paresh Vyas, James McCullagh, Thomas A. Milne, Vincenzo Cerundolo
Software Mentions: 5
Published: about 5 years ago

10.1186/s12900-016-0063-7

3D QSAR, pharmacophore and molecular docking studies of known inhibitors and designing of novel inhibitors for M18 aspartyl aminopeptidase of Plasmodium falciparum
Cited by: 22
Author(s): Madhuri Kumari, Subhash Chandra, Neeraj Tiwari, Naidu Subbarao
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0153932

Transcriptional Profiling of Ileocecal Valve of Holstein Dairy Cows Infected with Mycobacterium avium subsp. Paratuberculosis
Cited by: 24
Author(s): Randy J. Hempel, John P. Bannantine, Judith R. Stabel
Software Mentions: 5
Published: about 10 years ago

10.3390/cells10040876

Stability of Imprinting and Differentiation Capacity in Naïve Human Cells Induced by Chemical Inhibition of CDK8 and CDK19
Cited by: 0
Author(s): Raquel Bernad, Cian J. Lynch, Rocío G. Urdinguio, Camille Stephan‐Otto Attolini, Mario F. Fraga, Manuel Serrano
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pgen.1008055

Loss of function mutations in essential genes cause embryonic lethality in pigs
Cited by: 38
Author(s): Martijn F.L. Derks, Arne B. Gjuvsland, Mirte Bosse, Marcos S. Lopes, Maren van Son, B. Harlizius, Beatrice Tan, Hanne Hamland, Eli Grindflek, Martien A. M. Groenen, Hendrik Jan Megens
Software Mentions: 5
Published: over 7 years ago

10.3389/fgene.2015.00169

Identifying differential transcription factor binding in ChIP-seq
Cited by: 21
Author(s): Dai-Ying Wu, Danielle Bittencourt, Michael R. Stallcup, Kimberly D. Siegmund
Software Mentions: 5
Published: about 11 years ago

10.3389/fmicb.2021.683685

Characterization of Supragingival Plaque and Oral Swab Microbiomes in Children With Severe Early Childhood Caries
Cited by: 13
Author(s): Vivianne Cruz de Jesus, Mohd Wasif Khan, Betty-Anne Mittermuller, Kangmin Duan, Pingzhao Hu, Robert J Schroth, Prashen Chelikani
Software Mentions: 5
Published: about 5 years ago

10.1093/gbe/evab148

Unexpected Discovery of Hypermutator Phenotype Sounds the Alarm for Quality Control Strains
Cited by: 2
Author(s): Kun Wu, Zhou‐Hua Cheng, Emily Williams, Nathan T Turner, Dapeng Ran, Haichao Li, Xia Zhou, Huilin Guo, Way Sung, Dongfeng Liu, Michael Lynch, Hongan Long
Software Mentions: 5
Published: about 5 years ago

10.1155/2020/8827920

GJA1 Expression and Its Prognostic Value in Cervical Cancer
Cited by: 7
Author(s): Silu Meng, Xinran Fan, Jianwei Zhang, Ran An, Shuang Li
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0009440

Serological biomarker for assessing human exposure to Aedes mosquito bites during a randomized vector control intervention trial in northeastern Thailand
Cited by: 5
Author(s): Bénédicte Fustec, Thipruethai Phanitchat, Sirinart Aromseree, Chamsai Pientong, Kesorn Thaewnongiew, Tipaya Ekalaksananan, Dominique Cerqueira, Anne Poinsignon, Éric Elguero, Michael J. Bangs, Neal Alexander, Hans J. Overgaard, Vincent Corbel
Software Mentions: 5
Published: about 5 years ago

10.1002/hep4.1749

Meta‐analysis and Consolidation of Farnesoid X Receptor Chromatin Immunoprecipitation Sequencing Data Across Different Species and Conditions
Cited by: 4
Author(s): Emilian Jungwirth, Katrin Panzitt, Hanns‐Ulrich Marschall, Gerhard Thallinger, Martin Wagner
Software Mentions: 5
Published: about 5 years ago

10.1016/j.immuni.2017.12.010

The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages
Cited by: 153
Author(s): Zsolt Czimmerer, Bence Dániel, Attila Horváth, Dominik Rückerl, Gergely Nagy, Máté Kiss, Matthew Peloquin, Marietta Margit Budai, Ixchelt Cuaranta-Monroy, Zoltán Simándi, László Steiner, Béla Nagy, Szilárd Póliska, Csaba Bankó, Zsolt Bacsó, Ira G. Schulman, Sascha Sauer, Jean Deleuze, Judith E. Allen, Szilvia Benkő, László Nagy
Software Mentions: 5
Published: over 8 years ago

10.1242/jcs.232223

Tox4 modulates cell fate reprogramming
Cited by: 12
Author(s): Lotte Vanheer, Juan Song, Natalie De Geest, Adrian Janiszewski, Irene Talón, Caterina Provenzano, Taeho Oh, Joel Chappell, Vincent Pasque
Software Mentions: 5
Published: over 7 years ago

10.1155/2020/3817573

Diet Modifies Pioglitazone’s Influence on Hepatic PPAR<i>γ</i>-Regulated Mitochondrial Gene Expression
Cited by: 5
Author(s): Sakil Kulkarni, Jiansheng Huang, Eric Tycksen, Paul Cliften, David A. Rudnick
Software Mentions: 5
Published: almost 6 years ago

10.1038/sdata.2016.4

DNA methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing
Cited by: 10
Author(s): Anneleen Decock, Maté Ongenaert, Wim Van Criekinge, Franki Speleman, Jo Vandesompele
Software Mentions: 5
Published: over 10 years ago

10.3389/fpsyg.2019.02154

Sport and Exercise Psychology Studies in Brazil: Performance or Health?
Cited by: 4
Author(s): Lenamar Fiorese Vieira, André Luíz Félix Rodacki, Nayara Malheiros Caruzzo, Caio Rosas Moreira, Andressa Ribeiro Contreira, Aline Mendes de Lima, Leonardo de Sousa Fortes, João Ricardo Nickenig Vissoci, Joice Mara Facco Stefanello
Software Mentions: 5
Published: almost 7 years ago

10.3389/fonc.2021.670138

Integrated Analysis of ceRNA Network Reveals Prognostic and Metastasis Associated Biomarkers in Breast Cancer
Cited by: 8
Author(s): Qian Da, Qinghui Zheng, Danping Wu, Buyun Ye, Yang‐Yang Qian, Tao Zhou, Jie Qiu, Xuli Meng
Software Mentions: 5
Published: about 5 years ago

10.1016/j.celrep.2019.07.039

Activation and In Vivo Evolution of the MAIT Cell Transcriptome in Mice and Humans Reveals Tissue Repair Functionality
Cited by: 130
Author(s): Timothy S C Hinks, Emanuele Marchi, Maisha Jabeen, Moshe Olshansky, Ayako Kurioka, Troi Pediongco, Bronwyn S. Meehan, Lyudmila Kostenko, Stephen J. Turner, Alexandra J. Corbett, Zhenjun Chen, Paul Klenerman, James McCluskey
Software Mentions: 5
Published: almost 7 years ago

10.3389/fgene.2021.661440

Extensive Variation in Drought-Induced Gene Expression Changes Between Loblolly Pine Genotypes
Cited by: 3
Author(s): Jingjia Li, Jason B. West, Alexander Hart, Jill L. Wegrzyn, Matthew A. Smith, Jean‐Christophe Domec, Carol A. Loopstra, Claudio Casola
Software Mentions: 5
Published: about 5 years ago

10.3390/cells8101196

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription
Cited by: 6
Author(s): Leila Kianmehr, Homayoun Khazali, Hassan Rajabi‐Maham, Ali Sharifi‐Zarchi, François Cuzin, Minoo Rassoulzadegan
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pmed.1001924

Risks and Benefits of Nalmefene in the Treatment of Adult Alcohol Dependence: A Systematic Literature Review and Meta-Analysis of Published and Unpublished Double-Blind Randomized Controlled Trials
Cited by: 81
Author(s): Clément Palpacuer, Bruno Laviolle, Rémy Boussageon, Jean-Michel Reymann, Éric Bellissant, Florian Naudet
Software Mentions: 5
Published: over 10 years ago

10.7554/eLife.51325

Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18
Cited by: 21
Author(s): Huan Liu, Kaylia Duncan, Annika Helverson, Priyanka Kumari, Camille Mumm, Yuchen Xiao, Jenna C. Carlson, Fabrice Darbellay, Axel Visel, Elizabeth J. Leslie, Patrick Breheny, Albert Erives, Robert A. Cornell
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.30862

Bladder-cancer-associated mutations in RXRA activate peroxisome proliferator-activated receptors to drive urothelial proliferation
Cited by: 54
Author(s): Angela Halstead, Chiraag D Kapadia, Jennifer K. Bolzenius, Clarence E Chu, Andrew E. Schriefer, Lukas D. Wartman, Gregory R. Bowman, Vivek Arora
Software Mentions: 5
Published: over 8 years ago

10.1093/gigascience/giy109

Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data
Cited by: 3
Author(s): Sascha Herzinger, Valentin Grouès, Wei Gu, Venkata Satagopam, Peter Banda, Christophe Trefois, Reinhard Schneider
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0014077

Analyses of Copy Number Variation of GK Rat Reveal New Putative Type 2 Diabetes Susceptibility Loci
Cited by: 10
Author(s): Zhiqiang Ye, Shen Niu, Yang Yu, Hui Yu, Bao Hong Liu, Rong Xia Li, Hua Xiao, Rong Zeng, Yi Xue Li, Jia Wu, Yuan Yuan Li
Software Mentions: 5
Published: over 15 years ago

10.1093/molbev/msaa297

Eusociality Shapes Convergent Patterns of Molecular Evolution across Mitochondrial Genomes of Snapping Shrimps
Cited by: 12
Author(s): Solomon T. C. Chak, Juán Antonio Baeza, Phillip Barden
Software Mentions: 5
Published: over 5 years ago

10.1093/molbev/msab081

A Comprehensive Phylogenetic Analysis of the Serpin Superfamily
Cited by: 32
Author(s): Matthew A. Spence, Matthew D. Mortimer, Ashley M. Buckle, Bùi Quang Minh, C.J. Jackson
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0211316

Comparison of stone-free rates following shock wave lithotripsy, percutaneous nephrolithotomy, and retrograde intrarenal surgery for treatment of renal stones: A systematic review and network meta-analysis
Cited by: 63
Author(s): Doo Yong Chung, Dong Hyuk Kang, Kang Su Cho, Wooyoung Jeong, Hae Do Jung, Jong Kyou Kwon, Seon Heui Lee, Joo Yong Lee
Software Mentions: 5
Published: over 7 years ago

10.1093/gigascience/giaa112

A molecular map of lung neuroendocrine neoplasms
Cited by: 15
Author(s): Aurélie Gabriel, Emilie Mathian, Lise Mangiante, Catherine Voegele, Vincent Cahais, Akram Ghantous, James McKay, Nicolas Alcala, Lynnette Fernández-Cuesta, Matthieu Foll
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0073051

marmap: A Package for Importing, Plotting and Analyzing Bathymetric and Topographic Data in R
Cited by: 387
Author(s): Eric Pante, Benoît Simon-Bouhet
Software Mentions: 5
Published: almost 13 years ago

10.1038/s41598-021-95486-6

Genetic diversity and population structure of Alternaria species from tomato and potato in North Carolina and Wisconsin
Cited by: 10
Author(s): Tika B. Adhikari, Norman Muzhinji, Dennis Halterman, Frank J. Louws
Software Mentions: 5
Published: almost 5 years ago

10.1042/BSR20211451

Identification of a glycolysis-related lncRNA prognostic signature for clear cell renal cell carcinoma
Cited by: 7
Author(s): Wei Ma, Manli Zhong, Xiaowu Liu
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0193417

Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal
Cited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: over 8 years ago

10.1002/ece3.4952

Population genomics of rapidly invading lionfish in the Caribbean reveals signals of range expansion in the absence of spatial population structure
Cited by: 20
Author(s): Eleanor K. Bors, Santiago Herrera, James A. Morris, Timothy M. Shank
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2020.01757

The Composition of Microbial Communities in Six Streams, and Its Association With Environmental Conditions, and Foodborne Pathogen Isolation
Cited by: 9
Author(s): Taejung Chung, Daniel Weller, Jasna Kovač
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12864-019-5838-3

Genome-wide profiling of the alternative splicing provides insights into development in Plutella xylostella
Cited by: 6
Author(s): Qian Zhao, Weimin Zhong, Weiyi He, Yiying Li, Yaqing Li, Tianpu Li, Liette Vasseur, Minsheng You
Software Mentions: 5
Published: about 7 years ago

10.18632/oncotarget.25329

Genome-wide multi-omics profiling of the 8p11-p12 amplicon in breast carcinoma
Cited by: 13
Author(s): Toshima Z. Parris, Elisabeth Werner Rönnerman, Hanna Engqvist, Jana Biermann, Katarina Truvé, Szilárd Nemes, Eva Forssell-Aronsson, Giovanni Solinas, Anikó Kovács, Per Karlsson, Khalil Helou
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0088515

Extensive Expression Differences along Porcine Small Intestine Evidenced by Transcriptome Sequencing
Cited by: 29
Author(s): Núria Mach, Mustapha Berri, Diane Esquerré, Claire Chevaleyre, Gaëtan Lemonnier, Yvon Billon, Patricia Lepage, Isabelle P. Oswald, Joël Doré, Claire Rogel–Gaillard, Jordi Estellé
Software Mentions: 5
Published: over 12 years ago

10.3389/fmicb.2019.01429

Microbial Diversity in Bulk and Rhizosphere Soil of Ranunculus glacialis Along a High-Alpine Altitudinal Gradient
Cited by: 72
Author(s): Nadine Praeg, Harald Pauli, Paul Illmer
Software Mentions: 5
Published: about 7 years ago

10.1093/hmg/ddv203

Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans
Cited by: 65
Author(s): Ali Amin Al Olama, Tokhir Dadaev, Dennis J. Hazelett, Qiuyan Li, Daniel Leongamornlert, Ed Saunders, Sarah H. Stephens, Clara Cieza-Borrella, Ian Whitmore, Sara Benlloch Garcia, Graham G. Giles, Melissa C. Southey, Liesel M. FitzGerald, Henrik Grönberg, Fredrik Wiklund, Markus Aly, Brian E. Henderson, Fredrick Schumacher, Christopher A. Haiman, Johanna Schleutker, Tiina Wahlfors, Teuvo L.J. Tammela, Børge G. Nordestgaard, Tim Key, Ruth C. Travis, David E. Neal, Jenny Donovan, Freddie C. Hamdy, Paul D.P. Pharoah, Nora Pashayan, Kay‐Tee Khaw, Janet L. Stanford, Stephen N. Thibodeau, Shannon K. McDonnell, Daniel J. Schaid, Christiane Maier, Walther Vogel, Manuel Luedeke, Kathleen Herkommer, Adam S. Kibel, Cezary Cybulski, Dominika Wokołorczyk, Wojciech Kluźniak, Lisa A. Cannon‐Albright, Hermann Brenner, Katja Butterbach, Volker Arndt, Jong Y. Park, Thomas A. Sellers, Hui‐Yi Lin, Chavdar Slavov, Radka Kaneva, Vanio Mitev, Jyotsna Batra, Judith A. Clements, Amanda B. Spurdle, Manuel R. Teixeira, Paula Paulo, Sofia Maia, Hardev Pandha, Agnieszka Michael, Andrzej M. Kierzek, Koveela Govindasami, Michelle Guy, Artitaya Lophatonanon, Kenneth Muir, Ana Viñuela, Andrew Anand Brown, Cogs-Cruk Gwas-Ellipse Initiative, Mathew Freedman, David V. Conti, Douglas F. Easton, Gerhard A. Coetzee, Rosalind Eeles, Zsofia Kote‐Jarai
Software Mentions: 5
Published: about 11 years ago

10.1186/s12859-016-0951-7

Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer
Cited by: 18
Author(s): Mengyun Wu, Xiaofei Zhang, Dao‐Qing Dai, Le Ou-Yang, Yuan Zhu, Hong Yan
Software Mentions: 5
Published: over 10 years ago

10.1186/s12859-019-2778-5

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
Cited by: 26
Author(s): Julián Candia, John S. Tsang
Software Mentions: 5
Published: about 7 years ago

10.1186/1471-2105-11-311

FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases
Cited by: 25
Author(s): Stephen J. Goodswen, Cedric Gondro, Nathan S. Watson-Haigh, Haja N. Kadarmideen
Software Mentions: 5
Published: about 16 years ago

10.1038/s41598-020-80453-4

Prognostic signature of lung adenocarcinoma based on stem cell-related genes
Cited by: 7
Author(s): Zhanghao Huang, Muqi Shi, Hao Zhou, Jinjie Wang, Haijian Zhang, Jia Hai Shi
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0238304

Investigation of gene-gene interactions in cardiac traits and serum fatty acid levels in the LURIC Health Study
Cited by: 5
Author(s): Jiayan Zhou, Kristin Passero, Nicole Palmiero, Bertram Müller‐Myhsok, Marcus E. Kleber, Winfried Maerz, Molly A. Hall
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41438-021-00606-y

Integrative genomics reveals paths to sex dimorphism in <i>Salix purpurea</i> L
Cited by: 8
Author(s): Brennan Hyden, Craig H. Carlson, Fred E. Gouker, Jeremy Schmutz, Kerrie Barry, Anna Lipzen, Aarti Sharma, Laura Sandor, Gerald A. Tuskan, Guanying Feng, Matthew S. Olson, Stephen P. DiFazio, Lawrence B. Smart
Software Mentions: 5
Published: almost 5 years ago

10.1172/jci.insight.138772

IL-32γ potentiates tumor immunity in melanoma
Cited by: 19
Author(s): Thomas Gruber, Mirela Kremenovic, Hassan Sadozai, Nives Rombini, Lukas Baeriswyl, Fabienne Maibach, Robert L. Modlin, Michel Gilliet, Diego von Werdt, Robert E. Hunger, S. Morteza Seyed Jafari, Giulia Parisi, Gabriel Abril-Rodríguez, Antoni Ribas, Mirjam Schenk
Software Mentions: 5
Published: almost 6 years ago

10.1093/bib/bbaa150

Recent advances in user-friendly computational tools to engineer protein function
Cited by: 30
Author(s): Carlos Sequeiros-Borja, Bartłomiej Surpeta, Jan Brezovský
Software Mentions: 5
Published: almost 6 years ago

10.3389/fimmu.2019.01463

Contrasting Gene Expression Profiles of Monocytes and Lymphocytes From Peste-Des-Petits-Ruminants Virus Infected Goats
Cited by: 17
Author(s): Sajad A. Wani, Anamika Sahu, Raja Ishaq Nabi Khan, Awadh Bihari Pandey, Shikha Saxena, Neelima Hosamani, Waseem Akram Malla, Dheeraj Chaudhary, Sonam Kanchan, V. K. Sah, Kaushal Kishor Rajak, D. Muthuchelvan, Bina Mishra, Ashok Kumar Tiwari, Aditya Prasad Sahoo, Basavaraj Sajjanar, Yash Pal Singh, Ravi Kumar Gandham, Bishnu Prasad Mishra, Raj Kumar Singh
Software Mentions: 5
Published: about 7 years ago

10.1038/s41438-019-0146-2

Rootstock effects on scion phenotypes in a ‘Chambourcin’ experimental vineyard
Cited by: 31
Author(s): Zoë Migicovsky, Zachary N. Harris, Laura L. Klein, Mao Li, Adam McDermaid, Daniel H. Chitwood, Anne Fennell, László Kovács, Misha T. Kwasniewski, Jason P. Londo, Qin Ma, Allison J. Miller
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-53298-9

A pilot study of peripheral blood DNA methylation models as predictors of knee osteoarthritis radiographic progression: data from the Osteoarthritis Initiative (OAI)
Cited by: 10
Author(s): Christopher M. Dunn, Michael C. Nevitt, J.A. Lynch, Matlock A. Jeffries
Software Mentions: 5
Published: over 6 years ago

10.1186/s13104-020-05012-6

Whole genome bisulfite sequencing of Medicago truncatula A17 wild type and lss mutants
Cited by: 0
Author(s): Nowlan H. Freese, Elise Schnabel, Julia Frugoli
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0175330

Genomic analyses of the ancestral Manila family of Mycobacterium tuberculosis
Cited by: 8
Author(s): Xuehua Wan, Kent J. Koster, Lishi Qian, Edward Desmond, Richard Brostrom, Shaobin Hou, James T. Douglas
Software Mentions: 5
Published: over 9 years ago

10.1186/s12862-016-0743-8

Adaptive patterns in the p53 protein sequence of the hypoxia- and cancer-tolerant blind mole rat Spalax
Cited by: 8
Author(s): Vered Domankevich, Yarden Opatowsky, Assaf Malik, Abraham B. Korol, Zeev Frenkel, Irena Manov, Aaron Avivi, Imad Shams
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0229183

Divorce and adolescent academic achievement: Heterogeneity in the associations by parental education
Cited by: 9
Author(s): Sondre Aasen Nilsen, Kyrre Breivik, Bente Wold, Kristin Gärtner Askeland, Børge Sivertsen, Mari Hysing, Tormod Bøe
Software Mentions: 5
Published: over 6 years ago

10.1186/s12883-021-02276-8

Construction of a risk prediction model for Alzheimer’s disease in the elderly population
Cited by: 10
Author(s): Lingling Wang, Ping Li, Ming Hou, Xiumin Zhang, Xiaolin Cao, Hongyan Li
Software Mentions: 5
Published: about 5 years ago

10.3389/fsurg.2021.665115

Identification and Validation of a Prognostic 5-Protein Signature for Biochemical Recurrence Following Radical Prostatectomy for Prostate Cancer
Cited by: 1
Author(s): Daojun Lv, Zanfeng Cao, Wenjie Li, Haige Zheng, Xiangkun Wu, Yongda Liu, Danan Gu, Guohua Zeng
Software Mentions: 5
Published: about 5 years ago

10.3390/rs11050551

The Influence of Region of Interest Heterogeneity on Classification Accuracy in Wetland Systems
Cited by: 11
Author(s): Tedros M. Berhane, Hugo Costa, Charles R. Lane, Oleg A. Anenkhonov, Victor V. Chepinoga, Bradley C. Autrey
Software Mentions: 5
Published: over 7 years ago

10.1186/s13014-021-01810-9

Impact of feature selection methods and subgroup factors on prognostic analysis with CT-based radiomics in non-small cell lung cancer patients
Cited by: 15
Author(s): Yuto Sugai, Noriyuki Kadoya, Shohei Tanaka, Shunpei Tanabe, Mariko Umeda, Takaya Yamamoto, Kazuya Takeda, Suguru Dobashi, Haruna Ohashi, Ken Takeda, Keiichi Jingu
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.ppat.1009097

Vaginal microbiome-hormonal contraceptive interactions associate with the mucosal proteome and HIV acquisition
Cited by: 17
Author(s): Laura Noël‐Romas, Michelle Perner, Refilwe P. Molatlhegi, Christina Farr Zuend, Amanda Mabhula, Sarah Hoger, Alana Lamont, Kenzie Birse, Alicia R. Berard, Stuart McCorrister, Garett Westmacott, Al Leslie, Vanessa Poliquin, Renee Heffron, Lyle R. McKinnon, Adam Burgener
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2020.02129

Transcriptome Profiling of Human Monocyte-Derived Macrophages Upon CCL2 Neutralization Reveals an Association Between Activation of Innate Immune Pathways and Restriction of HIV-1 Gene Expression
Cited by: 7
Author(s): Daniela Angela Covino, Karolina Elżbieta Kaczor‐Urbanowicz, Jing Lü, Maria Vincenza Chiantore, Gianna Fiorucci, Maria Fenicia Vescio, Laura Catapano, Cristina Purificato, Clementina Maria Galluzzo, Roberta Amici, Mauro Andreotti, Maria Cristina Gauzzi, Matteo Pellegrini, Laura Fantuzzi
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13100-021-00236-0

Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa
Cited by: 26
Author(s): Guillaume Wos, Rimjhim Roy Choudhury, Filip Kolář, Christian Parisod
Software Mentions: 5
Published: over 5 years ago

10.3390/jcm10112524

Evaluation of Intracranial Hypertension in Traumatic Brain Injury Patient: A Noninvasive Approach Based on Cranial Computed Tomography Features
Cited by: 4
Author(s): Yingchi Shan, Yihua Li, Xuxu Xu, Junfeng Feng, Xiang Wu, Guoyi Gao
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0230492

Image-based metric of invasiveness predicts response to adjuvant temozolomide for primary glioblastoma
Cited by: 11
Author(s): Susan Christine Massey, Haylye White, Paula Whitmire, Tatum E Doyle, Sandra K. Johnston, Kyle Singleton, Pamela Jackson, Andrea Hawkins-Daarud, Bernard R. Bendok, Alyx Porter, Sujay A. Vora, Jann N. Sarkaria, Leland Hu, Maciej M. Mrugala, Kristin R. Swanson
Software Mentions: 5
Published: over 6 years ago

10.3390/cancers12061487

Only Hematopoietic Stem and Progenitor Cells from Cord Blood Are Susceptible to Malignant Transformation by MLL-AF4 Translocations
Cited by: 12
Author(s): Kathy-Ann Secker, Lukas Bruns, Hildegard Keppeler, Johan Jeong, Thomas Hentrich, Julia M. Schulze‐Hentrich, Barbara Mankel, Falko Fend, Dominik Schneidawind, Corina Schneidawind
Software Mentions: 5
Published: about 6 years ago

10.1186/s13229-020-00359-w

IGF-1 treatment causes unique transcriptional response in neurons from individuals with idiopathic autism
Cited by: 17
Author(s): Sara B. Linker, Ana Paula Mendes, Maria C. Marchetto
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-67897-4

New methodology to process shifted excitation Raman difference spectroscopy data: a case study of pollen classification
Cited by: 15
Author(s): Florian Korinth, Abdullah Saif Mondol, Clara Stiebing, Iwan W. Schie, Christoph Krafft, Jürgen Popp
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2021.620945

Individualized Prediction of Colorectal Cancer Metastasis Using a Radiogenomics Approach
Cited by: 2
Author(s): Qin Liu, Jie Li, Lin Xu, Jiasi Wang, Zong Yuan Zeng, Jiangping Fu, Xuan Huang, Yanpeng Chu, Jing Wang, Hongyu Zhang, Fanxin Zeng
Software Mentions: 5
Published: about 5 years ago

10.3390/insects11090578

The Microbiome of Neotropical Water Striders and Its Potential Role in Codiversification
Cited by: 12
Author(s): Anakena M. Castillo, Kristin Saltonstall, Carlos F. Arias, Karina Chavarria, Luis A. Ramírez‐Camejo, Luis C. Mejía, Luis F. De León
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0195461

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome
Cited by: 80
Author(s): Kris A. Christensen, Jong S. Leong, Dionne Sakhrani, Carlo A. Biagi, David R. Minkley, Ruth E. Withler, Eric B. Rondeau, Ben F. Koop, Robert H. Devlin
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0230284

Lake-depth related pattern of genetic and morphological diatom diversity in boreal Lake Bolshoe Toko, Eastern Siberia
Cited by: 15
Author(s): Kathleen R. Stoof‐Leichsenring, Katharina Dulias, Boris K. Biskaborn, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pbio.2006347

Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation
Cited by: 33
Author(s): Mingming Zhao, Jaimy Joy, Weiqiang Zhou, Supriyo De, William H. Wood, Kevin G. Becker, Hongkai Ji, Ranjan Sen
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmolb.2020.566491

Four Immune-Related Long Non-coding RNAs for Prognosis Prediction in Patients With Hepatocellular Carcinoma
Cited by: 15
Author(s): Muqi Li, Minni Liang, Tian Lan, Xiwen Wu, Wenlin Xie, Tielong Wang, Z Chen, Shunli Shen, Baogang Peng
Software Mentions: 5
Published: over 5 years ago

10.1038/s41420-021-00557-2

Identification of the pyroptosis‑related prognostic gene signature and the associated regulation axis in lung adenocarcinoma
Cited by: 119
Author(s): Wanli Lin, Ying Chen, Bomeng Wu, Zuwei Li
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-90654-0

Kernel weighted least square approach for imputing missing values of metabolomics data
Cited by: 7
Author(s): Nishith Kumar, Md. Rakibul Hoque, Masahiro Sugimoto
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0060536

Iterative Reconstruction of High-Dimensional Gaussian Graphical Models Based on a New Method to Estimate Partial Correlations under Constraints
Cited by: 0
Author(s): Vincent Guillemot, Andreas Bender, Anne‐Laure Boulesteix
Software Mentions: 5
Published: over 13 years ago

10.1186/s12966-018-0724-y

An open-source tool to identify active travel from hip-worn accelerometer, GPS and GIS data
Cited by: 16
Author(s): Duncan Procter, Angie S Page, Ashley R Cooper, Claire M Nightingale, Bina Ram, Alicja R. Rudnicka, Peter H. Whincup, Christelle Clary, Daniel Lewis, Steven Cummins, Anne Ellaway, Billie Giles-Corti, Derek G Cook, Christopher G. Owen
Software Mentions: 5
Published: almost 8 years ago

10.1111/cpr.13117

Prognostic and predictive role of a metabolic rate‐limiting enzyme signature in hepatocellular carcinoma
Cited by: 9
Author(s): Zhangding Wang, Yao Fu, Anliang Xia, Chen Chen, Jiamu Qu, Guifang Xu, Xiaoping Zou, Qiang Wang, Shouyu Wang
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-017-06355-0

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity
Cited by: 5
Author(s): Prashanna Balaji Venkatasubramanian, Gamze Toydemir, Nicole de Wit, Edoardo Saccenti, Vítor A. P. Martins dos Santos, Peter van Baarlen, Jerry M. Wells, María Suárez-Diez, Jurriaan J. Mes
Software Mentions: 5
Published: almost 9 years ago

10.1186/s13059-021-02336-9

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
Cited by: 56
Author(s): Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fédrigo, Shan-Estelle Brown, Marco Rosario Capodiferro, Farooq Omar Maan Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan S. Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vânia Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene W. Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2021.561254

Development and Validation of a Novel Metabolic-Related Signature Predicting Overall Survival for Pancreatic Cancer
Cited by: 5
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 5
Published: about 5 years ago

10.1016/j.celrep.2018.04.047

Influenza Virus Mounts a Two-Pronged Attack on Host RNA Polymerase II Transcription
Cited by: 68
Author(s): David L.V. Bauer, Michael Tellier, Maira Martínez-Alonso, Takayuki Nojima, Nick J. Proudfoot, Shona Murphy, Ervin Fodor
Software Mentions: 5
Published: about 8 years ago

10.3390/ijms20194688

SNPs rs11240569, rs708727, and rs823156 in SLC41A1 Do Not Discriminate Between Slovak Patients with Idiopathic Parkinson’s Disease and Healthy Controls: Statistics and Machine-Learning Evidence
Cited by: 7
Author(s): Michal Cibulka, Mária Brodňanová, Marián Grendár, Milan Grofik, Egon Kurča, Ivana Pilchová, Oto Osina, Zuzana Tatarková, Dušan Dobrota, Martin Kolísek
Software Mentions: 5
Published: almost 7 years ago

10.1186/s13059-021-02446-4

Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea
Cited by: 20
Author(s): Antoine Porquier, Constance Tisserant, F. Salinas, Carla Glassl, Lucas E. Wange, Wolfgang Enard, Andreas Hauser, Matthias Hahn, Arne Weiberg
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0252862

Approaches to measure class importance in Knowledge Graphs
Cited by: 2
Author(s): Daniel Fernández-Álvarez, Johannes Frey, José Emilio Labra Gayo, Daniel Gayo-Avello, Sebastian Hellmann
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0229845

A new method for computing the projection median, its influence curve and techniques for the production of projected quantile plots
Cited by: 1
Author(s): Fan Chen, Guy P. Nason
Software Mentions: 5
Published: about 6 years ago

10.3389/fcell.2020.616972

A Novel m6A Gene Signature Associated With Regulatory Immune Function for Prognosis Prediction in Clear-Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Siteng Chen, Ning Zhang, Encheng Zhang, Tao Wang, Lingge Jiang, Xiang Wang, Junhua Zheng
Software Mentions: 5
Published: over 5 years ago

10.1093/molbev/msaa110

Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum
Cited by: 10
Author(s): Rosa Fernández, Marina Marcet‐Houben, Fabrice Legeai, Gautier Richard, Stéphanie Robin, Valentin Wucher, Cinta Pegueroles, Toni Gabaldón, Denis Tagu
Software Mentions: 5
Published: about 6 years ago

10.1002/jcsm.12643

Single‐cell RNA sequencing and lipidomics reveal cell and lipid dynamics of fat infiltration in skeletal muscle
Cited by: 33
Author(s): Zhonglin Xu, Wenjing You, Wentao Chen, Yanbing Zhou, Qiuyun Nong, Teresa G. Valencak, Yizhen Wang, Tizhong Shan
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2164-11-32

Integrative analysis of the heat shock response in Aspergillus fumigatus
Cited by: 76
Author(s): Daniela Albrecht, Reinhard Guthke, Axel A. Brakhage, Olaf Kniemeyer
Software Mentions: 5
Published: over 16 years ago

10.1111/mpp.13003

Chorismate mutase and isochorismatase, two potential effectors of the migratory nematode <i>Hirschmanniella oryzae</i> , increase host susceptibility by manipulating secondary metabolite content of rice
Cited by: 8
Author(s): Lander Bauters, Tina Kyndt, Tim De Meyer, Kris Morreel, Wout Boerjan, Hannes Lefevere, Godelieve Gheysen
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.670746

P2RY14 Is a Potential Biomarker of Tumor Microenvironment Immunomodulation and Favorable Prognosis in Patients With Head and Neck Cancer
Cited by: 8
Author(s): Qingxiang Li, Le Xu, Yuke Li, Rong Yang, Qiao Qiao, Yifei Wang, Lin Wang, Yuxing Guo, Chuanbin Guo
Software Mentions: 5
Published: about 5 years ago

10.1002/2211-5463.13134

Identification of hub lncRNAs in head and neck cancer based on weighted gene co‐expression network analysis and experiments
Cited by: 13
Author(s): Longquan Shao
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2105-8-179

Genome Expression Pathway Analysis Tool – Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context
Cited by: 23
Author(s): Markus Weniger, Julia C. Engelmann, Jörg Schultz
Software Mentions: 5
Published: about 19 years ago

10.1007/s00330-019-06513-0

Optimal timing for prediction of pathologic complete response to neoadjuvant chemoradiotherapy with diffusion-weighted MRI in patients with esophageal cancer
Cited by: 24
Author(s): Alicia S Borggreve, S.E. Heethuis, M. Boekhoff, Lucas Goense, Peter S.N. van Rossum, Lodewijk A.A. Brosens, Astrid L.H.M.W. van Lier, Richard van Hillegersberg, J J W Lagendijk, Stella Mook, Jelle P. Ruurda, Gert J. Meijer
Software Mentions: 5
Published: over 6 years ago

10.1093/chemse/bjab003

Odor–Taste Interactions in Food Perception: Exposure Protocol Shows No Effects of Associative Learning
Cited by: 7
Author(s): Robin Fondberg, Johan N. Lundström, Janina Seubert
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-019-2969-0

Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models
Cited by: 24
Author(s): Marina Esteban-Medina, María Peña‐Chilet, Carlos Loucera, Joaquı́n Dopazo
Software Mentions: 5
Published: about 7 years ago

10.1038/s41421-020-00214-5

Global immune characterization of HBV/HCV-related hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression
Cited by: 67
Author(s): Guohe Song, Yang Shi, Meiying Zhang, Shyamal Goswami, Saifullah Afridi, Ling Meng, Jiaqiang Ma, Yi Chen, Youpei Lin, Juan Zhang, Yuming Liu, Zijie Jin, Shenghong Yang, Dongning Rao, Shu Zhang, Aiwu Ke, Xiaoying Wang, Yang Cao, Jian Zhou, Jia Fan, Xiaoming Zhang, Ruibin Xi, Qiang Gao
Software Mentions: 5
Published: over 5 years ago