Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1007696

https://doi.org/10.1371/journal.pcbi.1007696

The SONATA data format for efficient description of large-scale network models

Cited by: 26
Author(s): Kael Dai, Juan Hernando, Yazan N. Billeh, Sergey L. Gratiy, Judit Planas, Andrew P. Davison, Salvador Dura‐Bernal, Padraig Gleeson, Adrien Devresse, Benjamin Dichter, Michael Gevaert, James G. King, Werner A. H. Van Geit, Arseny V. Povolotsky, Eilif Müller, Jean-Denis Courcol, Anton Arkhipov
Published: over 4 years ago

Software Mentions 8

bioconductor: GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
Papers that mentioned: 243
cran: config
Manage Environment Specific Configuration Values
Papers that mentioned: 33
pypi: config
A hierarchical, easy-to-use, powerful configuration module for Python
Papers that mentioned: 33
pypi: glibc
Pure-Python bindings to glibc (based on ctypes)
Papers that mentioned: 11
pypi: NEURON
Empirically-based simulator for modeling neurons and networks of neurons
Papers that mentioned: 766
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pyNeuroML
Python utilities for NeuroML
Papers that mentioned: 3
pypi: PyNN
A Python package for simulator-independent specification of neuronal network models
Papers that mentioned: 131