Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02286-2

https://doi.org/10.1186/s13059-021-02286-2

Giotto: a toolbox for integrative analysis and visualization of spatial expression data

Cited by: 290
Author(s): Ruben Dries, Qi Zhu, Rui Dong, Chee-Huat Linus Eng, Huipeng Li, Kan Liu, Yuntian Fu, Tianxiao Zhao, Arpan Sarkar, Feng Bao, Rani E. George, Nico Pierson, Long Cai, Guo‐Cheng Yuan
Published: over 3 years ago

Software Mentions 9

bioconductor: CODEX
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
Papers that mentioned: 72
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: spatialDE
R wrapper for SpatialDE
Papers that mentioned: 2
cran: fitdistrplus
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
Papers that mentioned: 120
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: giotto
Web development simplified. An MVC framework supporting Python 3.
Papers that mentioned: 1
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
pypi: SpatialDE
Spatial and Temporal DE test
Papers that mentioned: 14