Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1748-7188-4-7

https://doi.org/10.1186/1748-7188-4-7

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Cited by: 71
Author(s): Koji Kadota, Yuji Nakai, Kentaro Shimizu
Published: over 15 years ago

Software Mentions 13

bioconductor: affy

Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989

bioconductor: gcrma

Background Adjustment Using Sequence Information
Papers that mentioned: 186

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: plier

Implements the Affymetrix PLIER algorithm
Papers that mentioned: 6

bioconductor: puma

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)
Papers that mentioned: 14

bioconductor: RankProd

Rank Product method for identifying differentially expressed genes with application in meta-analysis
Papers that mentioned: 213

bioconductor: ROC

utilities for ROC, with microarray focus
Papers that mentioned: 123

cran: st

Shrinkage t Statistic and Correlation-Adjusted t-Score
Papers that mentioned: 9

pypi: DFW

Papers that mentioned: 1

pypi: expresso

A symbolic expression manipulation library.
Papers that mentioned: 13

pypi: plier

Utilities for PLY (Python Lex & Yacc)
Papers that mentioned: 6

pypi: puma

Python Unified Multi-tasking API (PUMA)
Papers that mentioned: 14

pypi: st

Sf Tools for Python3 Development
Papers that mentioned: 9