Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2164-13-462

https://doi.org/10.1186/1471-2164-13-462

NG6: Integrated next generation sequencing storage and processing environment

Cited by: 54
Author(s): Jérôme Mariette, Frédéric Escudié, Nicolas Allias, Gérald Salin, Céline Noirot, Sylvain Thomas, Christophe Klopp
Published: almost 13 years ago

Software Mentions 10

cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: casava
casava: a csv reader thingy
Papers that mentioned: 13
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: galaxy
Galaxy (http://galaxyproject.org/).
Papers that mentioned: 32
pypi: PIMS
Python Image Sequence
Papers that mentioned: 25
pypi: smarty
Smart playlist creation for mpd
Papers that mentioned: 1